View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12189_low_8 (Length: 292)
Name: NF12189_low_8
Description: NF12189
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12189_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 282
Target Start/End: Complemental strand, 54650759 - 54650493
Alignment:
| Q |
16 |
gttctgcttttcaccttcctgaatttgtgccaacagctcagtaagttctagattcaannnnnnnataccgggtgcatcagaggaggcctcaacaagttct |
115 |
Q |
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| T |
54650759 |
gttctgcttttcaccttcctgaatttgtgtcaacacctcagtaagttctagattcaatttttctataccgggtgcatcagaggaggcctcaacaagtttt |
54650660 |
T |
|
| Q |
116 |
agattcagtttctctatatcgggtgcatcagaggaggggttccctagggaatcgcttggttcaggctcttgttggagatacttggcagcaacaacatcaa |
215 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
54650659 |
agattcagtttctctatatcaggtgcatcagaggaggggttccctagggaatcacttagttcaggctcttgttggagatacttggcagcaacaacattaa |
54650560 |
T |
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| Q |
216 |
ttcctgggtgaccaaaagagtaaggccgattcccaggagaaaacacaacaatagcgatctctgctcc |
282 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
54650559 |
ttcctgggtgaccaaaagagtaaggtcgattcccaggagaaaacacaacaatagcgatctctactcc |
54650493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 102 - 270
Target Start/End: Complemental strand, 34105984 - 34105816
Alignment:
| Q |
102 |
cctcaacaagttctagattcagtttctctatatcgggtgcatcagaggaggggttccctagggaatcgcttggttcaggctcttgttggagatacttggc |
201 |
Q |
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||||| ||||||||||||||| ||| |||||||| || ||| |||| |||||||| || ||||||| |||||||||| |||||||||||||||||| || |
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| T |
34105984 |
cctcaccaagttctagattcaatttttctatatctggagcaccagaagaggggttttcttgggaatcacttggttcagtctcttgttggagatactttgc |
34105885 |
T |
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| Q |
202 |
agcaacaacatcaattcctgggtgaccaaaagagtaaggccgattcccaggagaaaacacaacaatagc |
270 |
Q |
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| T |
34105884 |
agcaacaacatcaactcctggatgtccaaaagagtaaggcctgctccctggagagaacacaacaatagc |
34105816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 34106015 - 34105963
Alignment:
| Q |
20 |
tgcttttcaccttcctgaatttgtgccaacagctcagtaagttctagattcaa |
72 |
Q |
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|||||||||||||| ||||||||||||||| |||| ||||||||||||||| |
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| T |
34106015 |
tgcttttcaccttctcgaatttgtgccaacacctcaccaagttctagattcaa |
34105963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 282
Target Start/End: Original strand, 19162813 - 19162875
Alignment:
| Q |
220 |
tgggtgaccaaaagagtaaggccgattcccaggagaaaacacaacaatagcgatctctgctcc |
282 |
Q |
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|||||| || |||||||||||| ||||||||| || |||||||||||||| || |||||||| |
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| T |
19162813 |
tgggtgcccgaaagagtaaggcttattcccaggggagaacacaacaatagcaatttctgctcc |
19162875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 152 - 282
Target Start/End: Complemental strand, 17979046 - 17978916
Alignment:
| Q |
152 |
gggttccctagggaatcgcttggttcaggctcttgttggagatacttggcagcaacaacatcaattcctgggtgaccaaaagagtaaggccgattcccag |
251 |
Q |
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||||| ||| |||||||||||| |||| ||||||||||||||||||||| |||||||| |||| |||||||| |||||||||||||| | || || | |
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| T |
17979046 |
gggtttccttgggaatcgcttgcatcagcctcttgttggagatacttggctgcaacaacgtcaacacctgggtggccaaaagagtaaggtctatcaccgg |
17978947 |
T |
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| Q |
252 |
gagaaaacacaacaatagcgatctctgctcc |
282 |
Q |
| |
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|||| |||||||||||||||| |||||||| |
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| T |
17978946 |
gagagaacacaacaatagcgacttctgctcc |
17978916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 270
Target Start/End: Original strand, 23296171 - 23296250
Alignment:
| Q |
191 |
agatacttggcagcaacaacatcaattcctgggtgaccaaaagagtaaggccgattcccaggagaaaacacaacaatagc |
270 |
Q |
| |
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||||||||| ||||||||||||||| |||||||||||||||||||||||| || || ||||| |||||||||||||| |
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| T |
23296171 |
agatacttgccagcaacaacatcaactcctgggtgaccaaaagagtaaggattatcacctggagagaacacaacaatagc |
23296250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 193 - 272
Target Start/End: Original strand, 23310347 - 23310426
Alignment:
| Q |
193 |
atacttggcagcaacaacatcaattcctgggtgaccaaaagagtaaggccgattcccaggagaaaacacaacaatagcga |
272 |
Q |
| |
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||||||||||||||||| ||||| |||||||||||||||||| ||||| ||||| ||||| |||||||||||||||| |
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| T |
23310347 |
atacttggcagcaacaaaatcaactcctgggtgaccaaaagaataaggattgttccctggagagaacacaacaatagcga |
23310426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 271
Target Start/End: Original strand, 27791756 - 27791857
Alignment:
| Q |
170 |
cttggttcaggctcttgttggagatacttggcagcaacaacatcaattcctgggtgaccaaaagagtaaggccgattcccaggagaaaacacaacaatag |
269 |
Q |
| |
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||||||| |||||| |||||||||||||| |||||||| ||||| ||| |||||||||||||||||||| || || ||||| ||||||||||||| |
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| T |
27791756 |
cttggttttggctctaattggagatacttggtagcaacaaaatcaactccagggtgaccaaaagagtaaggattgttacctggagagaacacaacaatag |
27791855 |
T |
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| Q |
270 |
cg |
271 |
Q |
| |
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|| |
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| T |
27791856 |
cg |
27791857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 23296053 - 23296103
Alignment:
| Q |
22 |
cttttcaccttcctgaatttgtgccaacagctcagtaagttctagattcaa |
72 |
Q |
| |
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|||||||||||| || ||||||||||||||||||| ||||||| ||||||| |
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| T |
23296053 |
cttttcaccttcttggatttgtgccaacagctcagcaagttcttgattcaa |
23296103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 27791656 - 27791709
Alignment:
| Q |
19 |
ctgcttttcaccttcctgaatttgtgccaacagctcagtaagttctagattcaa |
72 |
Q |
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|||||||||||| ||| |||||||||| |||| |||| ||||||||||||||| |
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| T |
27791656 |
ctgcttttcaccatcccgaatttgtgctaacacatcagcaagttctagattcaa |
27791709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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