View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12190_high_1 (Length: 379)
Name: NF12190_high_1
Description: NF12190
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12190_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 365
Target Start/End: Complemental strand, 6558521 - 6558160
Alignment:
| Q |
11 |
cagagaacatcacaaagggtaagatatcatgaatcatgatacacaatatttaagtctattaatggcaatgaaaacaacatgaagcattgctaat---tta |
107 |
Q |
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| T |
6558521 |
cagagaacatcacaaagggtaagatatcatgaatcatgatacacaatatttaagtctattaatggctatgaaaacaacttgaagcattgctaatggttta |
6558422 |
T |
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| Q |
108 |
tagaaagaagnnnnnnnn----ccactcaattaaaattcaaagcaaaatcataaacttcacacacaatatatagtccaaaacttctttcatttcccttat |
203 |
Q |
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| T |
6558421 |
tagaaagaaaagaaaaaaaaaaccactcaattaaaattcaaagaaaaatcataaacttcacacacaatatatagtccaaaacttctttcatttcccttat |
6558322 |
T |
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| Q |
204 |
cctcctatttccttatacctttctcttgttttctctctttctccataacccttccaaaaatgaagttccaagagaaagagcatctctatggaaacaataa |
303 |
Q |
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| T |
6558321 |
cctcctatttccttacacctttctcttgttttctctttttctccataacccttccaaaaatgaagttccaagagaaagagcatctctatggaaacaataa |
6558222 |
T |
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| Q |
304 |
caaaaaacaaatgttaccaaaaataattttattagcaatatttgtcataatcgtagttcttg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6558221 |
caaaaaacaaatgttaccaaaaataattttattagcaatatttgtcataatcatagttcttg |
6558160 |
T |
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