View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12191_low_2 (Length: 1008)

Name: NF12191_low_2
Description: NF12191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12191_low_2
NF12191_low_2
[»] chr4 (38 HSPs)
chr4 (8-989)||(27724909-27725886)
chr4 (785-921)||(27737379-27737514)
chr4 (345-455)||(53315357-53315467)
chr4 (333-453)||(2996592-2996712)
chr4 (345-417)||(6987708-6987780)
chr4 (345-454)||(27123282-27123391)
chr4 (371-455)||(6428075-6428159)
chr4 (345-417)||(11264332-11264404)
chr4 (382-451)||(18628486-18628555)
chr4 (364-421)||(52419581-52419638)
chr4 (333-453)||(21157787-21157907)
chr4 (347-403)||(28749888-28749944)
chr4 (342-401)||(2874607-2874666)
chr4 (366-453)||(3549486-3549573)
chr4 (334-449)||(56007699-56007814)
chr4 (373-451)||(8328052-8328130)
chr4 (371-417)||(19429479-19429525)
chr4 (377-455)||(24370880-24370958)
chr4 (372-454)||(25896842-25896924)
chr4 (345-455)||(45128239-45128349)
chr4 (371-453)||(46187840-46187922)
chr4 (333-454)||(14011253-14011374)
chr4 (948-989)||(27737524-27737565)
chr4 (340-417)||(28406938-28407015)
chr4 (360-417)||(41097223-41097280)
chr4 (372-452)||(4691906-4691986)
chr4 (371-411)||(21953005-21953045)
chr4 (371-455)||(33534098-33534182)
chr4 (332-452)||(47970314-47970434)
chr4 (361-465)||(54277242-54277346)
chr4 (361-452)||(7063539-7063630)
chr4 (371-466)||(7730657-7730751)
chr4 (374-453)||(25717653-25717732)
chr4 (346-453)||(29375935-29376042)
chr4 (397-455)||(2811554-2811612)
chr4 (374-452)||(25583652-25583730)
chr4 (371-465)||(32071925-32072014)
chr4 (371-452)||(51560221-51560302)
[»] chr6 (34 HSPs)
chr6 (333-455)||(2455829-2455951)
chr6 (345-452)||(8420129-8420236)
chr6 (333-453)||(9833042-9833161)
chr6 (374-452)||(733109-733187)
chr6 (345-454)||(2460081-2460190)
chr6 (371-455)||(32917254-32917338)
chr6 (371-414)||(9027635-9027678)
chr6 (351-430)||(27595521-27595600)
chr6 (378-455)||(30865547-30865624)
chr6 (371-455)||(31338033-31338118)
chr6 (345-417)||(32171350-32171422)
chr6 (345-408)||(725631-725694)
chr6 (371-465)||(8348283-8348377)
chr6 (351-417)||(27693406-27693472)
chr6 (361-443)||(34538159-34538241)
chr6 (368-417)||(2027765-2027814)
chr6 (347-400)||(27615257-27615310)
chr6 (371-452)||(27857415-27857496)
chr6 (371-452)||(32848528-32848609)
chr6 (333-413)||(32577957-32578037)
chr6 (263-295)||(32980491-32980523)
chr6 (370-450)||(33385585-33385665)
chr6 (333-413)||(34939532-34939612)
chr6 (345-396)||(9667973-9668024)
chr6 (345-452)||(32171498-32171605)
chr6 (333-452)||(33887849-33887968)
chr6 (377-455)||(3180998-3181076)
chr6 (345-415)||(29957891-29957961)
chr6 (262-295)||(2514651-2514684)
chr6 (368-417)||(9202957-9203006)
chr6 (346-419)||(20368145-20368218)
chr6 (266-303)||(27595647-27595684)
chr6 (375-412)||(31594356-31594393)
chr6 (374-411)||(34404600-34404637)
[»] chr2 (43 HSPs)
chr2 (381-454)||(3973609-3973682)
chr2 (371-455)||(28803459-28803543)
chr2 (339-456)||(43985234-43985351)
chr2 (330-430)||(1741986-1742086)
chr2 (348-454)||(43456637-43456743)
chr2 (368-453)||(4350744-4350829)
chr2 (333-417)||(25661126-25661210)
chr2 (333-417)||(34652003-34652087)
chr2 (333-397)||(36852491-36852555)
chr2 (360-415)||(11344739-11344794)
chr2 (346-465)||(18884899-18885018)
chr2 (380-455)||(22878164-22878239)
chr2 (371-466)||(30552561-30552656)
chr2 (363-416)||(4550796-4550849)
chr2 (346-403)||(10285892-10285949)
chr2 (380-465)||(14277812-14277897)
chr2 (363-415)||(1494415-1494467)
chr2 (361-465)||(32821856-32821960)
chr2 (361-455)||(9478346-9478440)
chr2 (377-419)||(43808621-43808663)
chr2 (371-424)||(12785920-12785973)
chr2 (363-452)||(17221472-17221561)
chr2 (374-450)||(1318296-1318371)
chr2 (361-452)||(787379-787470)
chr2 (371-454)||(5759505-5759587)
chr2 (373-452)||(29430817-29430896)
chr2 (393-448)||(34927042-34927097)
chr2 (392-454)||(6988197-6988259)
chr2 (371-405)||(9878661-9878695)
chr2 (361-403)||(12215854-12215896)
chr2 (404-454)||(17775396-17775446)
chr2 (333-454)||(43141890-43142012)
chr2 (361-455)||(43529787-43529881)
chr2 (372-413)||(1830103-1830144)
chr2 (345-390)||(1939326-1939371)
chr2 (370-455)||(9996794-9996879)
chr2 (393-430)||(10190345-10190382)
chr2 (378-451)||(13866942-13867015)
chr2 (377-414)||(15120246-15120283)
chr2 (262-303)||(25609745-25609786)
chr2 (380-453)||(25609862-25609935)
chr2 (361-406)||(43065428-43065473)
chr2 (345-410)||(43205340-43205405)
[»] chr5 (33 HSPs)
chr5 (339-455)||(11297125-11297241)
chr5 (347-455)||(29590559-29590666)
chr5 (371-455)||(14980566-14980650)
chr5 (361-452)||(32172700-32172791)
chr5 (333-452)||(37611147-37611266)
chr5 (333-452)||(37787877-37787996)
chr5 (334-455)||(11457119-11457239)
chr5 (371-416)||(38047847-38047892)
chr5 (333-453)||(36639541-36639661)
chr5 (345-413)||(41052899-41052967)
chr5 (371-454)||(35960470-35960552)
chr5 (377-455)||(499660-499738)
chr5 (345-451)||(35095720-35095825)
chr5 (371-452)||(11095427-11095508)
chr5 (368-453)||(25720348-25720433)
chr5 (371-455)||(16016355-16016439)
chr5 (371-415)||(16944944-16944988)
chr5 (361-453)||(34117479-34117570)
chr5 (369-453)||(39257325-39257409)
chr5 (371-430)||(10152391-10152450)
chr5 (347-406)||(11700356-11700415)
chr5 (372-455)||(12459930-12460013)
chr5 (371-406)||(40499704-40499739)
chr5 (384-454)||(12407660-12407730)
chr5 (334-408)||(13604825-13604899)
chr5 (361-415)||(28586735-28586789)
chr5 (371-453)||(40534256-40534338)
chr5 (371-453)||(42646948-42647029)
chr5 (391-452)||(7550450-7550511)
chr5 (378-411)||(12242683-12242716)
chr5 (361-450)||(29336677-29336766)
chr5 (390-455)||(37968953-37969018)
chr5 (396-465)||(38028618-38028687)
[»] chr8 (36 HSPs)
chr8 (333-415)||(31875564-31875646)
chr8 (349-455)||(12361227-12361335)
chr8 (363-414)||(30987961-30988012)
chr8 (361-453)||(43709309-43709403)
chr8 (345-414)||(8558691-8558760)
chr8 (377-453)||(30191072-30191148)
chr8 (361-415)||(4055585-4055639)
chr8 (345-455)||(4560533-4560643)
chr8 (373-450)||(21130671-21130748)
chr8 (361-417)||(14949913-14949969)
chr8 (392-450)||(24326109-24326167)
chr8 (345-419)||(27645935-27646009)
chr8 (347-464)||(4511061-4511178)
chr8 (371-455)||(5069754-5069836)
chr8 (361-414)||(6509273-6509326)
chr8 (361-454)||(9700048-9700141)
chr8 (377-418)||(37461205-37461246)
chr8 (374-455)||(39551138-39551219)
chr8 (375-455)||(7008660-7008739)
chr8 (333-417)||(7918413-7918497)
chr8 (399-455)||(11059658-11059714)
chr8 (371-455)||(40071806-40071890)
chr8 (404-455)||(3634613-3634664)
chr8 (371-446)||(11569395-11569470)
chr8 (360-455)||(43368629-43368724)
chr8 (345-455)||(6950353-6950463)
chr8 (371-413)||(9540967-9541009)
chr8 (371-417)||(9572927-9572973)
chr8 (382-452)||(18931230-18931300)
chr8 (348-406)||(37740405-37740462)
chr8 (262-295)||(1470944-1470977)
chr8 (262-303)||(4558747-4558788)
chr8 (345-453)||(11183576-11183682)
chr8 (380-449)||(25881350-25881419)
chr8 (362-407)||(29168642-29168687)
chr8 (351-400)||(29262858-29262907)
[»] chr7 (40 HSPs)
chr7 (333-455)||(27626052-27626174)
chr7 (346-455)||(48157049-48157158)
chr7 (361-453)||(36598287-36598379)
chr7 (361-455)||(1418468-1418560)
chr7 (376-455)||(39542229-39542308)
chr7 (371-453)||(33894684-33894766)
chr7 (339-417)||(44808183-44808261)
chr7 (368-452)||(8427067-8427151)
chr7 (371-455)||(23214912-23214996)
chr7 (373-452)||(30748966-30749045)
chr7 (350-449)||(45078314-45078413)
chr7 (364-406)||(5269536-5269578)
chr7 (345-455)||(12234818-12234928)
chr7 (345-443)||(22387837-22387935)
chr7 (377-455)||(25670515-25670593)
chr7 (361-454)||(30751566-30751659)
chr7 (371-454)||(24048599-24048680)
chr7 (379-455)||(31341200-31341276)
chr7 (333-405)||(36370688-36370760)
chr7 (371-455)||(39551477-39551561)
chr7 (364-412)||(47427275-47427323)
chr7 (348-411)||(3500940-3501003)
chr7 (345-448)||(28165122-28165225)
chr7 (342-401)||(29290361-29290420)
chr7 (380-455)||(34754739-34754814)
chr7 (370-405)||(44989908-44989943)
chr7 (379-453)||(3836614-3836688)
chr7 (345-451)||(27121527-27121632)
chr7 (371-413)||(36537965-36538007)
chr7 (371-417)||(39360080-39360126)
chr7 (262-304)||(49060489-49060531)
chr7 (334-395)||(2013214-2013275)
chr7 (375-452)||(2727290-2727367)
chr7 (361-430)||(12834916-12834985)
chr7 (368-453)||(20547321-20547406)
chr7 (368-417)||(25422380-25422429)
chr7 (371-408)||(33645937-33645974)
chr7 (371-400)||(39568308-39568337)
chr7 (333-455)||(44151405-44151531)
chr7 (360-405)||(44686976-44687021)
[»] chr3 (37 HSPs)
chr3 (333-417)||(37273153-37273237)
chr3 (350-465)||(52323813-52323928)
chr3 (368-454)||(21872225-21872311)
chr3 (363-455)||(25182919-25183008)
chr3 (345-442)||(20192548-20192645)
chr3 (392-453)||(22667481-22667542)
chr3 (392-453)||(22724120-22724181)
chr3 (330-411)||(49465909-49465990)
chr3 (361-453)||(24624257-24624349)
chr3 (333-451)||(33965421-33965540)
chr3 (392-450)||(11041160-11041218)
chr3 (384-454)||(50211805-50211875)
chr3 (361-466)||(36646300-36646405)
chr3 (371-452)||(41724269-41724350)
chr3 (376-455)||(11039707-11039786)
chr3 (371-464)||(24281104-24281197)
chr3 (378-455)||(40880877-40880954)
chr3 (373-417)||(1810036-1810080)
chr3 (385-453)||(24158447-24158515)
chr3 (380-452)||(27792938-27793010)
chr3 (371-455)||(36200153-36200237)
chr3 (371-451)||(37155058-37155138)
chr3 (371-451)||(37200413-37200493)
chr3 (377-448)||(50004715-50004787)
chr3 (377-416)||(2606278-2606317)
chr3 (377-452)||(10540425-10540500)
chr3 (371-414)||(14598523-14598566)
chr3 (371-414)||(42817192-42817235)
chr3 (371-417)||(11039306-11039352)
chr3 (371-417)||(21574547-21574593)
chr3 (345-455)||(26603224-26603334)
chr3 (371-413)||(31403075-31403117)
chr3 (371-417)||(49772635-49772681)
chr3 (262-303)||(1395620-1395661)
chr3 (396-453)||(25699129-25699186)
chr3 (345-442)||(43115087-43115184)
chr3 (374-443)||(53735913-53735982)
[»] chr1 (45 HSPs)
chr1 (363-453)||(1662622-1662712)
chr1 (345-455)||(30259415-30259525)
chr1 (346-455)||(5591896-5592004)
chr1 (374-455)||(23373242-23373323)
chr1 (361-453)||(15581301-15581393)
chr1 (370-453)||(4549472-4549555)
chr1 (373-416)||(38867799-38867842)
chr1 (371-445)||(44422756-44422830)
chr1 (362-411)||(11560535-11560584)
chr1 (347-455)||(3597210-3597318)
chr1 (371-451)||(32515374-32515454)
chr1 (372-455)||(4033946-4034029)
chr1 (371-418)||(15579539-15579586)
chr1 (396-455)||(27807197-27807256)
chr1 (330-453)||(31517671-31517794)
chr1 (333-455)||(12564428-12564550)
chr1 (377-455)||(28467496-28467574)
chr1 (371-453)||(43420315-43420397)
chr1 (363-452)||(14737658-14737747)
chr1 (366-407)||(17631079-17631120)
chr1 (372-417)||(23407489-23407534)
chr1 (379-452)||(26679419-26679492)
chr1 (342-455)||(29723517-29723630)
chr1 (334-439)||(44031944-44032049)
chr1 (361-454)||(45327627-45327720)
chr1 (372-417)||(49692019-49692064)
chr1 (371-455)||(10199337-10199421)
chr1 (361-454)||(17628646-17628735)
chr1 (371-455)||(27140535-27140619)
chr1 (379-455)||(51929391-51929467)
chr1 (345-452)||(4868431-4868537)
chr1 (392-455)||(6279477-6279540)
chr1 (345-408)||(15515572-15515635)
chr1 (368-455)||(16980857-16980944)
chr1 (426-465)||(33204313-33204352)
chr1 (372-455)||(34536216-34536299)
chr1 (371-414)||(37941955-37941998)
chr1 (264-303)||(45234148-45234187)
chr1 (370-413)||(49521776-49521819)
chr1 (333-455)||(37593613-37593735)
chr1 (349-415)||(37811887-37811953)
chr1 (382-455)||(5157140-5157213)
chr1 (423-468)||(6292601-6292646)
chr1 (361-406)||(27145589-27145634)
chr1 (262-303)||(50319241-50319282)
[»] scaffold0024 (1 HSPs)
scaffold0024 (378-449)||(27640-27711)
[»] scaffold0110 (1 HSPs)
scaffold0110 (383-453)||(4154-4224)
[»] scaffold0311 (1 HSPs)
scaffold0311 (337-442)||(10559-10664)
[»] scaffold0012 (1 HSPs)
scaffold0012 (371-400)||(38649-38678)


Alignment Details
Target: chr4 (Bit Score: 778; Significance: 0; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 778; E-Value: 0
Query Start/End: Original strand, 8 - 989
Target Start/End: Original strand, 27724909 - 27725886
Alignment:
Q  8 gaacctgtgggagagaatctgactccagaagcttttatcacatgtccagaccagnnnnnnnttacggctgttgaatttgcaagctttggtgatccttcgg 107  Q
    |||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||       ||||||||||||| |||||||||||||||||||||||||    
T  27724909 gaacgtgtgggggagaatctgactccagaagcttttatcacgtgtccggaccagaaaaaaattacggctgttgagtttgcaagctttggtgatccttcgg 27725008  T
Q  108 gtttctgtggaagctttactatgggaaaatgtaatgcaccttcctccaagaagattgttgagcaggtagcgctctcgtttctttgctagcaaactaactt 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27725009 gtttctgtggaagctttattatgggaaaatgtaatgcaccttcctccaagaagattgttgagcaggtagagctctcgtttctttgctagcaaactaactt 27725108  T
Q  208 tgatcatgtttggattaacggcttgattaagcacttatagtactataagtgtttgctatttctataataaaacataaaataaagtcaagttatttttggt 307  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  27725109 tggtcatgtttggattaacggcttgattaagcacttatagtactataagtgtttgctatttctataataaaacataaaataa-gtcaagttattttcggt 27725207  T
Q  308 aaaagcgataagnnnnnnnnacaatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctct 407  Q
    ||||| ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725208 aaaagtgataagttttttttacaatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctct 27725307  T
Q  408 caaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaacaaactctttctcttttatttttatcattttctgttttatatgt 507  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27725308 caaacagtcgtatatgtgcttatctcagtagataagctcaaataagtcggtctaaacaaactctttctcttttatttttatcattttctgttttatatgc 27725407  T
Q  508 tgtgacaaatatgaaggtgataaataacatgttctgtgtgactgtaatttgagcagctatgcttaggaaaaccaacttgttcggttccaatggtcaaagc 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725408 tgtgacaaatatgaaggtgataaataacatgttctgtgtgactgtaatttgagcagctatgcttaggaaaaccaacttgttcggttccaatggtcaaagc 27725507  T
Q  608 aactttcaccggtggcaatgatggttgtccagatattgtgaagacgcttgcaatccaagtgaagtgtggatgagttgagctagtagtgatttggttggtg 707  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  27725508 aactttcaccggtggcaatgatggttgtccagatgttgtgaagacgcttgcaatccaagtgaagtgtggatgagttgagc---tagtgatttggttggtg 27725604  T
Q  708 aagttgatggagtccatgagctcaannnnnnnnnnnnnnnnnnnnnnngtagcaaaaaatacctgggaagattcatctttgtttttgacagacaaacatt 807  Q
    |||||||||||||||||||||||||                        |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725605 aagttgatggagtccatgagctcaattttttgtttgttttatttttttttagcaaaaaatacctgggaagattcatctttgtttttgacagacaaacatt 27725704  T
Q  808 ttgtcagttcatttagtttttacatctaaaacgcaaataaaatattaataagaattcaattttgtttcatattcactgccttgtccttgttggagtatag 907  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725705 ttgtcagttcatttagtttttacatctaaaacacaaataaaatatttataagaattcaattttgtttcatattcactgccttgtccttgttggagtatag 27725804  T
Q  908 cccctttaaattcctaataactcaaacgatgttaagtaaatggtgctttgtgatgaatcacatgtttcattgcttcgaattg 989  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27725805 tccctttaaattcctaataactcaaacgatgttaagtaaatggtgctttgtgatgaatcacatgtttcattgcttcgaattg 27725886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 785 - 921
Target Start/End: Original strand, 27737379 - 27737514
Alignment:
Q  785 tttgtttttgacagacaaacattttgtcagttcatttagtttttacatctaaaacgcaaataaaatattaataagaattcaattttgtttcatattcact 884  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||    
T  27737379 tttgtatttgacaaacaaacattttgttagttcatttagtttttacatctaaaacacaaataaaaaatttataagaattcaattttgtttcatattcact 27737478  T
Q  885 gccttgtccttgttggagtatagcccctttaaattcc 921  Q
    |||||||||||||||||||| || |||||||||||||    
T  27737479 gccttgtccttgttggagta-agtccctttaaattcc 27737514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 53315357 - 53315467
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    ||||||| |||| | || ||||||| |||||||||||| ||| ||| ||| ||||||||||| |||| ||||||||||||||||||  |||| |||||||    
T  53315357 gcttatgaaaataagttaaaaatagcttatggacatgtgatatgttgttttcataagctctcacaaatagtcttatatgtgcttataccagtggataagc 53315456  T
Q  445 tcaaataagtc 455  Q
    |||||||||||    
T  53315457 tcaaataagtc 53315467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 333 - 453
Target Start/End: Original strand, 2996592 - 2996712
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    |||||||| || || |||| |||| | ||||||| || |||||||||||||||||||| ||| |||||||||||||||||||||| | | |||||||| |    
T  2996592 ctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacagtctcaaaagtgcttatgt 2996691  T
Q  433 cagtagataagctcaaataag 453  Q
    || || ||||| |||||||||    
T  2996692 caataaataagttcaaataag 2996712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 6987780 - 6987708
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||||| | ||||||||||||||||||||||||||||||| | ||||||||||||| ||||||||||    
T  6987780 gcttatggaaataagttgaaaatagtttatggacatgtcataagttgtatccataagctctcccaaacagtct 6987708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 27123391 - 27123282
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| | ||||||| |  |||  ||||||||||||||| |||||||||||||||||||||||||| | | || |||||   |||  ||||||    
T  27123391 gcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagc 27123292  T
Q  445 tcaaataagt 454  Q
    ||||||||||    
T  27123291 tcaaataagt 27123282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 6428075 - 6428159
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||| ||| ||||| ||||||||||| |||| | | ||||||||  || || |||||||||||||||||    
T  6428075 ttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtc 6428159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 345 - 417
Target Start/End: Original strand, 11264332 - 11264404
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||||| | ||||||| |||||||||||||||||||||||  ||| ||| |||||| ||||||||||    
T  11264332 gcttatggaaataagttgaaaacagtttatggacatgtcataagttgattctatatgctctcccaaacagtct 11264404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 382 - 451
Target Start/End: Complemental strand, 18628555 - 18628486
Alignment:
Q  382 tcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaata 451  Q
    ||||||||| ||| ||||||||||| |||||||||| | | ||| |||| ||||||||||||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaata 18628486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 364 - 421
Target Start/End: Complemental strand, 52419638 - 52419581
Alignment:
Q  364 aaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttata 421  Q
    |||||||||||| |||||| ||||||| ||| |||||| |||||||||||||||||||    
T  52419638 aaatagtttatgaacatgtaataagttgttttcataaggtctctcaaacagtcttata 52419581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 453
Target Start/End: Original strand, 21157787 - 21157907
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    ||||| ||||| |||||||||||| |  | |||| || || || | |||||||||| | ||||  ||||||||  |||||||||||| | |||||||| |    
T  21157787 ctatcctgaagagcttatggaaataagctaaaaacagcttttgtaaatgtcataagctgtttctgtaagctcttccaaacagtcttacaagtgcttatgt 21157886  T
Q  433 cagtagataagctcaaataag 453  Q
    |||||||| ||||||||||||    
T  21157887 cagtagatgagctcaaataag 21157907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 28749944 - 28749888
Alignment:
Q  347 ttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagct 403  Q
    ||||| |||| | ||||||| ||||||||||||||| ||||||||||||||||||||    
T  28749944 ttatgaaaatgagttgaaaacagtttatggacatgtaataagttatttccataagct 28749888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 342 - 401
Target Start/End: Complemental strand, 2874666 - 2874607
Alignment:
Q  342 agtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataag 401  Q
    ||||||||||||||| |   |||||||| |||||||||||||||||||| ||||||||||    
T  2874666 agtgcttatggaaataagcggaaaatagattatggacatgtcataagttgtttccataag 2874607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 366 - 453
Target Start/End: Complemental strand, 3549573 - 3549486
Alignment:
Q  366 atagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||||| |||||||||||||   ||||| |||||| ||||||||||||||| ||| ||||||||  || ||||||| || |||||||    
T  3549573 atagtttgtggacatgtcatacactattttcataagttctctcaaacagtctcataagtgcttatgccaatagataaactaaaataag 3549486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 449
Target Start/End: Original strand, 56007699 - 56007814
Alignment:
Q  334 tatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctc 433  Q
    ||||||| || |||||| ||||| | || |||||||   || |||||||||||||||| ||  || |||||||||||||||||||| | ||| ||||  |    
T  56007699 tatcttggagagcttatagaaataagttcaaaatagacaatcgacatgtcataagttacttgtattagctctctcaaacagtcttacaagtgattatgcc 56007798  T
Q  434 agtagataagctcaaa 449  Q
    |||||||||| |||||    
T  56007799 agtagataagttcaaa 56007814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 373 - 451
Target Start/End: Complemental strand, 8328130 - 8328052
Alignment:
Q  373 atggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaata 451  Q
    ||||||||||||||| || ||| |||||||| |  |||||||||| ||| ||||||||  || ||||||||||||||||    
T  8328130 atggacatgtcataaattgttttcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaata 8328052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 19429525 - 19429479
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||||    
T  19429525 ttatggacatgtcataagttttctccataagctctcccaaacagtct 19429479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 24370958 - 24370880
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||| |||||||||| | | ||||||| ||| | ||||||||||   | ||||||||||||||||||||    
T  24370958 acatgtcataagttgtttccataagttttatcaaacattctcacatgtgcttatgcgaatagataagctcaaataagtc 24370880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 372 - 454
Target Start/End: Original strand, 25896842 - 25896924
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    ||||||||||||||||| |||||| ||||||||||  ||||||||| | | ||||| ||   ||||||||| |||||||||||    
T  25896842 tatggacatgtcataagctatttctataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaataagt 25896924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 45128349 - 45128239
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| |  |||||| || | |||||||||  || |||| |||||||||||||||||||||| | | | ||||| ||||  | |||||||||     
T  45128349 gcttatggaaataagctgaaaacagctcatggacatgatatcagttgtttccataagctctctcaaacaatatcacatgtggttatgccggtagataagt 45128250  T
Q  445 tcaaataagtc 455  Q
    |||||||||||    
T  45128249 tcaaataagtc 45128239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 453
Target Start/End: Complemental strand, 46187922 - 46187840
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||| ||||| |||||| || ||||||||| | |||| ||||||||| ||| ||| ||||  |||||||||||||||||||||    
T  46187922 ttatagacatatcataaattgtttccataaaccctcttaaacagtctcataagtgtttatgccagtagataagctcaaataag 46187840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 454
Target Start/End: Original strand, 14011253 - 14011374
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    |||||||| || |||||||||||| |  |||||| || |||  ||||||| ||||  | ||| ||||||||||| |||| ||| ||| |||||||||| |    
T  14011253 ctatcttggagagcttatggaaataagctgaaaacagcttaaagacatgtgataaactctttgcataagctctcccaaatagttttacatgtgcttatgt 14011352  T
Q  433 cagtagataagctcaaataagt 454  Q
     |||||||||| ||||| ||||    
T  14011353 aagtagataagttcaaagaagt 14011374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 948 - 989
Target Start/End: Original strand, 27737524 - 27737565
Alignment:
Q  948 tggtgctttgtgatgaatcacatgtttcattgcttcgaattg 989  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  27737524 tggtgcttggtgatgaatcacatgtttcattgcttcaaattg 27737565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 340 - 417
Target Start/End: Original strand, 28406938 - 28407015
Alignment:
Q  340 gaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||| |||||||||||| |  || |||||||||||| | ||||||| |||| ||||| ||||||||||||| ||||||    
T  28406938 gaagagcttatggaaataagctgcaaatagtttatgaatatgtcatgagttgtttccgtaagctctctcaaccagtct 28407015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 360 - 417
Target Start/End: Complemental strand, 41097280 - 41097223
Alignment:
Q  360 ttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||| ||||||||||||||| |||| |||| |||||||||| | ||||||||    
T  41097280 ttgaaaatagcttatggacatgtcattagttgtttctataagctctcccgaacagtct 41097223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 372 - 452
Target Start/End: Original strand, 4691906 - 4691986
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||| ||||||||||||| |||||||||| | ||||||| ||||| | | ||| || |  ||||||||||||||||||||    
T  4691906 tatgggcatgtcataagttgtttccataagttttctcaaatagtctcacaagtgattgtgacagtagataagctcaaataa 4691986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 21953005 - 21953045
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaa 411  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  21953005 ttatggacatgtcataagttctttccataagctctcccaaa 21953045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 33534182 - 33534098
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||| |||||| || || ||| |||||||||||||||| | ||| | | || ||||| ||| ||||||||||||||||||||    
T  33534182 ttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagataagctcaaataagtc 33534098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 332 - 452
Target Start/End: Original strand, 47970314 - 47970434
Alignment:
Q  332 tctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatc 431  Q
    |||||| || || ||||||| |||| |  |||||| | |||||||| |||||| ||||  |||||||||||| ||   |||||| | | | ||||||||     
T  47970314 tctatcatggagagcttatgcaaataagctgaaaacaatttatggaaatgtcacaagtagtttccataagctttccataacagtttcacaagtgcttatg 47970413  T
Q  432 tcagtagataagctcaaataa 452  Q
    |||||||||||||||||||||    
T  47970414 tcagtagataagctcaaataa 47970434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 361 - 465
Target Start/End: Complemental strand, 54277346 - 54277242
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtct 460  Q
    ||||||||  ||||| |||||| ||||| | ||||  ||||||||| | |||||||| ||| ||| |||| ||| |||||||| |||||||||||  |||    
T  54277346 tgaaaataacttatgaacatgtgataagctgtttctgtaagctctcgctaacagtctcataagtgtttatgtcactagataagttcaaataagtcaatct 54277247  T
Q  461 aaaca 465  Q
    |||||    
T  54277246 aaaca 54277242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 7063539 - 7063630
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||||| ||||||| ||||||||| || || ||||||| ||||| ||||||||| | | || | ||| ||| ||||| |||||||||||    
T  7063539 tgaaaatagcttatggaaatgtcataaattgttcccataagatctcttaaacagtctcacaagtacctatatcattagatgagctcaaataa 7063630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 466
Target Start/End: Original strand, 7730657 - 7730751
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaacaa 466  Q
    |||||||||||||||||||| ||||| |||||||||  ||| ||||| |   ||| |||| ||| ||||| ||||||||||||||| || ||||||    
T  7730657 ttatggacatgtcataagttgtttccttaagctctccaaaatagtctcacgcgtgtttatgtcattagat-agctcaaataagtcgatccaaacaa 7730751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 453
Target Start/End: Original strand, 25717653 - 25717732
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||| |||||||||| ||||||||||||||  |||||| | | | | |||||||| || ||| |||||||||||||||    
T  25717653 tggacaagtcataagttgtttccataagctcttccaaacaatttcacaagtgcttatgtcggtacataagctcaaataag 25717732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 29375935 - 29376042
Alignment:
Q  346 cttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagct 445  Q
    ||||||||||| | ||||||| |   ||||||| ||||||||| | |||||||||||||||| ||| ||  | | | |||||||| ||| |||||||| |    
T  29375935 cttatggaaataagttgaaaacaaaatatggacctgtcataagctgtttccataagctctctgaaatagcgtcacaagtgcttatgtcaatagataagtt 29376034  T
Q  446 caaataag 453  Q
    ||||||||    
T  29376035 caaataag 29376042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 397 - 455
Target Start/End: Original strand, 2811554 - 2811612
Alignment:
Q  397 ataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||| |||||||||||||||| |||  |||||||  |||||||||| ||||||||||||    
T  2811554 ataatctctctcaaacagtctcataaatgcttatgccagtagataacctcaaataagtc 2811612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 374 - 452
Target Start/End: Original strand, 25583652 - 25583730
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||||||||||||| ||| ||||||| ||| |||||||||| | |  || |||| |||| |||||| |||||||||    
T  25583652 tggacatgtcataagttgtttgcataagcgctcccaaacagtctcacacatgtttatgtcagaagataaactcaaataa 25583730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 32071925 - 32072014
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaaca 465  Q
    |||||||| ||||||||||| |||||||||     ||||||| |||| | | |||||||| ||| ||||||| |||||||||||| ||| |||||    
T  32071925 ttatggacgtgtcataagttgtttccataa-----ctcaaactgtctcacaagtgcttatgtcaatagataaactcaaataagtcagtccaaaca 32072014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 452
Target Start/End: Complemental strand, 51560302 - 51560221
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||| |||||| ||||| | ||| |||||| |||| |||| ||||| ||| ||||||||  ||||||||||||||| ||||    
T  51560302 ttatgaacatgtgataaggtgttttcataaggtctcccaaagagtctcataagtgcttatgccagtagataagctcatataa 51560221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 333 - 455
Target Start/End: Original strand, 2455829 - 2455951
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    |||||||| || |||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||   ||||| |||   | ||||||||      
T  2455829 ctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgc 2455928  T
Q  433 cagtagataagctcaaataagtc 455  Q
    | |||||||||||||||||||||    
T  2455929 cggtagataagctcaaataagtc 2455951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 345 - 452
Target Start/End: Complemental strand, 8420236 - 8420129
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| | |||||||||| || ||||||||||||||| |||||| |||||||||| | |||||||| | | ||| |||| ||| |||||||||    
T  8420236 gcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctctcactaacagtctcacaagtgtttatgtcaatagataagc 8420137  T
Q  445 tcaaataa 452  Q
    ||||||||    
T  8420136 tcaaataa 8420129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 333 - 453
Target Start/End: Complemental strand, 9833161 - 9833042
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    ||||| ||||| |||||||||||| | ||||||||| |||||||||||| |||| ||| |||||||||| ||||||||| ||||| ||| || ||||       
T  9833161 ctatcatgaagagcttatggaaataagttgaaaataatttatggacatgccatatgtt-tttccataagatctctcaaatagtctcataagtacttacgc 9833063  T
Q  433 cagtagataagctcaaataag 453  Q
    || ||||||| ||||||||||    
T  9833062 caatagataaactcaaataag 9833042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 374 - 452
Target Start/End: Complemental strand, 733187 - 733109
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||||||||||||||||||||| |||||| ||||| |||  |||| ||||||||   |||||||||||||||||||    
T  733187 tggacatgtcataagttatttccatcagctctatcaaagagttctataagtgcttatggtagtagataagctcaaataa 733109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 345 - 454
Target Start/End: Complemental strand, 2460190 - 2460081
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| | ||||||| |  |||  ||||||||||||||| |||||||||||||||||||||||||| | | || |||||   |||  ||||||    
T  2460190 gcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagc 2460091  T
Q  445 tcaaataagt 454  Q
    ||||||||||    
T  2460090 tcaaataagt 2460081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 32917254 - 32917338
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||| | | ||| ||||   ||||| ||||||| ||||||||    
T  32917254 ttatggacatgtcataagttgtttccataagctctcccaaacagtctcacaagtgtttattctagtaggtaagctctaataagtc 32917338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 371 - 414
Target Start/End: Original strand, 9027635 - 9027678
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacag 414  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  9027635 ttatggacatgtcataagttatttccataagctctttcaaacag 9027678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 27595600 - 27595521
Alignment:
Q  351 ggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttat 430  Q
    |||||| | |||||||||| ||||| |||||||||||||| |||||||||  |||| |||||||||| ||| ||||||||    
T  27595600 ggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataaattctcccaaacagtctcataagtgcttat 27595521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 30865547 - 30865624
Alignment:
Q  378 catgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||||||||||||| |||| |||| | | ||| |||| | |  |||||||||||||||||||    
T  30865547 catgtcataagttatttccataagctctcttaaactgtctaacaagtgtttatgttaacagataagctcaaataagtc 30865624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 31338033 - 31338118
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctc-aaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||| ||| ||||||||||| | ||| ||| || || ||||||||   ||||||||||||||||||||||    
T  31338033 ttatggacatgtcataagttgttttcataagctctcacaaaagagttttgtacgtgcttatgctagtagataagctcaaataagtc 31338118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 417
Target Start/End: Complemental strand, 32171422 - 32171350
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||||| |  ||||||||| || ||||| ||||||||| | ||| ||||||||||||||||||||||    
T  32171422 gcttatggaaataagctgaaaatagcttctggacttgtcataagctgttttcataagctctctcaaacagtct 32171350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 725694 - 725631
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctc 408  Q
    |||||||||||| |  |||||||||| || |||||||||||||||| ||| |||||||||||||    
T  725694 gcttatggaaataagctgaaaatagtctacggacatgtcataagttgttttcataagctctctc 725631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 465
Target Start/End: Original strand, 8348283 - 8348377
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaaca 465  Q
    |||||| ||||| ||||||| ||| | |||||||||||||||||| | | |  || |||| || ||||||||||| |||||||||| ||||||||    
T  8348283 ttatggtcatgttataagttgttttcgtaagctctctcaaacagtatcaaaaatgattatatcggtagataagctaaaataagtcgatctaaaca 8348377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Complemental strand, 27693472 - 27693406
Alignment:
Q  351 ggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||| | |||||||||| ||||| |||||||||||||| |||||||||  ||||||||| |||||    
T  27693472 ggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataaattctctcaaatagtct 27693406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 361 - 443
Target Start/End: Complemental strand, 34538241 - 34538159
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataag 443  Q
    ||||||||||||||||||||||| |||| | |||  ||||| ||||||||| ||||| | | |||||||| | ||||||||||    
T  34538241 tgaaaatagtttatggacatgtcgtaagctgtttttataagatctctcaaatagtctcacaagtgcttatatgagtagataag 34538159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 2027814 - 2027765
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    ||||||| ||||||||||||||| |||| |||||||||| ||||||||||    
T  2027814 agtttattgacatgtcataagttgtttctataagctctcccaaacagtct 2027765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 27615310 - 27615257
Alignment:
Q  347 ttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataa 400  Q
    |||||||||| | |||||||||| ||||| |||||||||||||| |||||||||    
T  27615310 ttatggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 27615257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 452
Target Start/End: Original strand, 27857415 - 27857496
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||| |||||||||||| ||| ||||||||||| |||||||| | | | |||  ||| ||||||||||| |||||||||    
T  27857415 ttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaataa 27857496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 452
Target Start/End: Complemental strand, 32848609 - 32848528
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||| || ||||||| ||||||||||||||||| | ||| | || | |  ||||||| |||||||||||||||||||||    
T  32848609 ttatggaaatatcataagctatttccataagctctccccaacggactcacaaatgcttatgtcagtagataagctcaaataa 32848528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 333 - 413
Target Start/End: Complemental strand, 32578037 - 32577957
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    ||||| ||||| || ||||||||| |  |||||| || | | |||||||||||||||| ||| ||||||||||||||||||    
T  32578037 ctatcctgaagagcatatggaaataagctgaaaacagctcaaggacatgtcataagttgttttcataagctctctcaaaca 32577957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 32980491 - 32980523
Alignment:
Q  263 ctatttctataataaaacataaaataaagtcaa 295  Q
    |||||||||||||||||||||||||||||||||    
T  32980491 ctatttctataataaaacataaaataaagtcaa 32980523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 370 - 450
Target Start/End: Original strand, 33385585 - 33385665
Alignment:
Q  370 tttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaat 450  Q
    |||||||||||||||| || | ||||||||| ||||  |||||||| | | | |||||||| |||||||||||| ||||||    
T  33385585 tttatggacatgtcatgagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaat 33385665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 333 - 413
Target Start/End: Original strand, 34939532 - 34939612
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    ||||| ||||| | |||||||||| |  |||||| |  ||| |||| ||||||||||| ||||||||||||||||||||||    
T  34939532 ctatcctgaagaggttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctctcaaaca 34939612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 396
Target Start/End: Complemental strand, 9668024 - 9667973
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttcc 396  Q
    |||||||||||| | ||||||| || |||||||||||||||||||| |||||    
T  9668024 gcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttcc 9667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 32171498 - 32171605
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| |  |||||| |||| |||||  | ||||||||| ||||| ||||||||| ||| |||||| | |  ||||||| |||||| |||||     
T  32171498 gcttatggaaataagctgaaaacagttcatggaggtatcataagttgtttccttaagctctcccaaccagtctcacaaatgcttatgtcagtaaataagt 32171597  T
Q  445 tcaaataa 452  Q
    ||||||||    
T  32171598 tcaaataa 32171605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 452
Target Start/End: Original strand, 33887849 - 33887968
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    ||||| |||| ||||||||||||| | ||||||| |  || || |||||||||||| ||||| |||||  ||||||||||| | | | | ||||| || |    
T  33887849 ctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaattctctcaaacaatgtcacaagtgctaatgt 33887948  T
Q  433 cagtagataagctcaaataa 452  Q
    ||||| |||| |||||||||    
T  33887949 cagtaaataaactcaaataa 33887968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 3181076 - 3180998
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||| ||||||||| ||| ||| |||||| ||||| ||||| | | |||||||| || ||||||||| |||||||||||    
T  3181076 acatttcataagttgtttacattagctctttcaaatagtctcacaagtgcttatgtctgtagataagttcaaataagtc 3180998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 29957961 - 29957891
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    |||||||||||| |  ||||||||| | ||| ||||||||| |||  || |||||||||||||||||||||    
T  29957961 gcttatggaaataagctgaaaatagatcatgaacatgtcatgagtatttcccataagctctctcaaacagt 29957891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 295
Target Start/End: Original strand, 2514651 - 2514684
Alignment:
Q  262 gctatttctataataaaacataaaataaagtcaa 295  Q
    |||||||||||||||||| |||||||||||||||    
T  2514651 gctatttctataataaaagataaaataaagtcaa 2514684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 9203006 - 9202957
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||| ||||| ||| |||||||| |||||| |||||||||||||||    
T  9203006 agtttatgaacatgccatgagttattttcataagttctctcaaacagtct 9202957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 346 - 419
Target Start/End: Complemental strand, 20368218 - 20368145
Alignment:
Q  346 cttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtctta 419  Q
    |||||| |||| | |||||| ||| ||||| |||||||||||||| ||| |||||| |||| |||| |||||||    
T  20368218 cttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataagttctcccaaatagtctta 20368145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 27595684 - 27595647
Alignment:
Q  266 tttctataataaaacataaaataaagtcaagttatttt 303  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  27595684 tttctataataaaagataaaataaagtcaaattatttt 27595647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 412
Target Start/End: Complemental strand, 31594393 - 31594356
Alignment:
Q  375 ggacatgtcataagttatttccataagctctctcaaac 412  Q
    |||||||||||||||| ||||||||| |||||||||||    
T  31594393 ggacatgtcataagttgtttccataacctctctcaaac 31594356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 374 - 411
Target Start/End: Original strand, 34404600 - 34404637
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaa 411  Q
    ||||||||||||||||| ||||||||||||||| ||||    
T  34404600 tggacatgtcataagttgtttccataagctctcccaaa 34404637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 2e-21; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 3973609 - 3973682
Alignment:
Q  381 gtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  3973609 gtcataagttgtttccatatgctctctcaaacagtcttataagtgcttatatcagtggataagctcaaataagt 3973682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 28803543 - 28803459
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||| |||||||| | ||||||||||||||| | ||||||||||  | |||||||||||||||||||||    
T  28803543 ttatggacatgtcataagttgtttccatatgttctctcaaacagtctcacatgtgcttatgccggtagataagctcaaataagtc 28803459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 339 - 456
Target Start/End: Original strand, 43985234 - 43985351
Alignment:
Q  339 tgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtag 438  Q
    ||||| |||||||||||  | ||||||| || |||||||||||||||||||| ||||  ||| |||||||||||||| ||| | ||| |||| |||||||    
T  43985234 tgaagagcttatggaaacaagttgaaaaaagcttatggacatgtcataagttgtttcagtaatctctctcaaacagttttacaagtgtttatgtcagtag 43985333  T
Q  439 ataagctcaaataagtcg 456  Q
    |||| || ||||||||||    
T  43985334 ataaacttaaataagtcg 43985351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 330 - 430
Target Start/End: Complemental strand, 1742086 - 1741986
Alignment:
Q  330 aatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgctta 429  Q
    |||||||| ||||| | |||||||||| | ||||| |||| ||||| |||||||||||||| ||||||||||||||| |||| ||||| ||  |||||||    
T  1742086 aatctatcatgaagagtttatggaaataagttgaagatagcttatgcacatgtcataagttgtttccataagctctcccaaatagtctcatgggtgctta 1741987  T
Q  430 t 430  Q
    |    
T  1741986 t 1741986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 348 - 454
Target Start/End: Complemental strand, 43456743 - 43456637
Alignment:
Q  348 tatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctca 447  Q
    ||||||||| |  |||||| |||||||||||||||||| |||| ||| || ||||||| ||||||||||||| | ||| |||| | |||| ||||| |||    
T  43456743 tatggaaataagctgaaaacagtttatggacatgtcatgagttgttttcacaagctctttcaaacagtcttacaagtgtttatgtgagtaaataagttca 43456644  T
Q  448 aataagt 454  Q
    |||||||    
T  43456643 aataagt 43456637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 368 - 453
Target Start/End: Original strand, 4350744 - 4350829
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||||| |||||||||||| | ||| |||||| ||||||||||| |||  || |||||||| |||||||| |||||||||||||    
T  4350744 agtttatgaacatgtcataagctgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataag 4350829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 417
Target Start/End: Original strand, 25661126 - 25661210
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    ||||| ||||| |||||||||||| || |||||| |||||| |||||| ||||||| ||||||| ||||||||  ||||||||||    
T  25661126 ctatcctgaagagcttatggaaataatctgaaaacagtttaaggacatttcataagctatttccgtaagctctgccaaacagtct 25661210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 34652087 - 34652003
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||| || |||||||||||| | ||||||| || |||||||||||||||||||| |||| ||||||| |||| ||| ||||    
T  34652087 ctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataagctttctccaaccgtct 34652003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 36852491 - 36852555
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttcca 397  Q
    |||||||| || |||||||||||| || |||||||||||||| ||||||||||||||||| ||||    
T  36852491 ctatcttggagagcttatggaaataatctgaaaatagtttatagacatgtcataagttatatcca 36852555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Complemental strand, 11344794 - 11344739
Alignment:
Q  360 ttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    ||||||| ||||||||||||||||||||||| |||||||||| ||| |||||||||    
T  11344794 ttgaaaacagtttatggacatgtcataagttgtttccataaggtctgtcaaacagt 11344739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 346 - 465
Target Start/End: Original strand, 18884899 - 18885018
Alignment:
Q  346 cttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagct 445  Q
    ||||||||||| || |||||| || | ||||| |||||||||| | |||| |||||||||| ||||||| |||| | || ||||| ||| |||||| |||    
T  18884899 cttatggaaataatctgaaaacagctaatggaaatgtcataagctgtttctataagctctcccaaacagccttacaagttcttatgtcaatagatacgct 18884998  T
Q  446 caaataagtcggtctaaaca 465  Q
    | ||||||||| || |||||    
T  18884999 cgaataagtcgatccaaaca 18885018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 380 - 455
Target Start/End: Original strand, 22878164 - 22878239
Alignment:
Q  380 tgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||| || |||||||||| |||| |||||||||| | | |||||||| ||||| ||||||||||||||||||    
T  22878164 tgtcataatttgtttccataaggtctcccaaacagtctcacaagtgcttatgtcagtggataagctcaaataagtc 22878239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 371 - 466
Target Start/End: Complemental strand, 30552656 - 30552561
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaacaa 466  Q
    |||| ||||||||||||||| |||| |||| || ||||||||||| | | | ||||||||  ||||||||||||||||||| |||  |||||||||    
T  30552656 ttattgacatgtcataagttgtttcgataacctatctcaaacagtttcaaaagtgcttataccagtagataagctcaaatatgtcaatctaaacaa 30552561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 363 - 416
Target Start/End: Original strand, 4550796 - 4550849
Alignment:
Q  363 aaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtc 416  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||| |||||||||    
T  4550796 aaaatagcttatgaacatgtcataagttgtttccataagctctcccaaacagtc 4550849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 10285892 - 10285949
Alignment:
Q  346 cttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagct 403  Q
    ||||||||||| | ||||||| || |||||||||||||||||||||||| ||||||||    
T  10285892 cttatggaaataagttgaaaacagcttatggacatgtcataagttattttcataagct 10285949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 380 - 465
Target Start/End: Complemental strand, 14277897 - 14277812
Alignment:
Q  380 tgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaaca 465  Q
    ||||||||||| ||||||| ||||||  |||||| ||| | | || ||||| || |||||||| ||||||||||||||||||||||    
T  14277897 tgtcataagttgtttccatgagctcttccaaacactctcacaagtacttatgtccgtagataaactcaaataagtcggtctaaaca 14277812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 363 - 415
Target Start/End: Complemental strand, 1494467 - 1494415
Alignment:
Q  363 aaaatagtttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    |||| ||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  1494467 aaaacagtttatggacatgtcataagctgttttcataagctctctcaaacagt 1494415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 465
Target Start/End: Original strand, 32821856 - 32821960
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtct 460  Q
    |||||| || |||||||||||||||||||| |||| |||| ||||  |||||||||||  |  ||||||  |  |||||||||||||||||||||  |||    
T  32821856 tgaaaacagcttatggacatgtcataagttgtttctataaactcttccaaacagtcttgcaaatgcttacgttggtagataagctcaaataagtcaatct 32821955  T
Q  461 aaaca 465  Q
    |||||    
T  32821956 aaaca 32821960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 361 - 455
Target Start/End: Original strand, 9478346 - 9478440
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||| || |||||||||||| ||||||| ||| ||||| |||||||||||||||  | | || ||||| |  ||||||||| |||||||||||    
T  9478346 tgaaaacagcttatggacatgtaataagttgtttgcataaactctctcaaacagtcacacaagtacttatgttggtagataagttcaaataagtc 9478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 43808621 - 43808663
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtctta 419  Q
    |||||||||||||||||| |||||||||||||||| |||||||    
T  43808621 acatgtcataagttattttcataagctctctcaaatagtctta 43808663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 12785920 - 12785973
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgt 424  Q
    ||||||||||||| |||||| ||||| |||||||||||||| |||||| |||||    
T  12785920 ttatggacatgtcgtaagttgtttccgtaagctctctcaaatagtcttttatgt 12785973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 452
Target Start/End: Complemental strand, 17221561 - 17221472
Alignment:
Q  363 aaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||| |||||||||| |||||||||| ||||||||||||||||  | |||||||| | | ||||| ||  ||||||||||  ||||||||    
T  17221561 aaaaaagtttatggatatgtcataagatatttccataagctcttccgaacagtctcagaagtgctaatgacagtagataatttcaaataa 17221472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 374 - 450
Target Start/End: Original strand, 1318296 - 1318371
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaat 450  Q
    ||||||||||||||| | ||| ||||||||||| |||||||||| | | ||||||||  |||||||||| |||||||    
T  1318296 tggacatgtcataagatgttttcataagctctcacaaacagtctcacaagtgcttat-gcagtagataatctcaaat 1318371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 787379 - 787470
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||| || |||||||||||||||||| | ||| |||||| |||| |||||||| | | | ||||||||  ||||||||| |||| |||||    
T  787379 tgaaaacagcttatggacatgtcataagctgttttcataagttctcacaaacagtgtcacaagtgcttatgccagtagatatgctcgaataa 787470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 454
Target Start/End: Complemental strand, 5759587 - 5759505
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    ||||||||||||| |||| | ||||||||||||||| |||||||||| | | || |||||  || ||||||| |||||||||||    
T  5759587 ttatggacatgtc-taagctgtttccataagctctcccaaacagtctcacaagtacttataccaatagataaactcaaataagt 5759505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 373 - 452
Target Start/End: Original strand, 29430817 - 29430896
Alignment:
Q  373 atggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||||||||||||| ||||| |||||| |||  |||| ||||  | | ||| |||| |||||||||||||||||||||    
T  29430817 atggacatgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaaataa 29430896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 393 - 448
Target Start/End: Original strand, 34927042 - 34927097
Alignment:
Q  393 ttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaa 448  Q
    ||||||||| |||  |||||||||||||| |||||||| |||||| ||||||||||    
T  34927042 ttccataagttcttccaaacagtcttataagtgcttatgtcagtaaataagctcaa 34927097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 6988197 - 6988259
Alignment:
Q  392 tttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||| ||||||||||||||||| |||  || ||| |||| |||||||||||| ||||||||||    
T  6988197 tttctataagctctctcaaacaatctcgtaggtgattatatcagtagataagttcaaataagt 6988259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 9878695 - 9878661
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctct 405  Q
    |||||||||||||||||||| ||||||||||||||    
T  9878695 ttatggacatgtcataagttgtttccataagctct 9878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 361 - 403
Target Start/End: Original strand, 12215854 - 12215896
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagct 403  Q
    |||||| || |||||||||||||||||| ||||||||||||||    
T  12215854 tgaaaacagcttatggacatgtcataagctatttccataagct 12215896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 404 - 454
Target Start/End: Complemental strand, 17775446 - 17775396
Alignment:
Q  404 ctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||||||||||||||| | | |||||| |||||||||| ||||||||||||    
T  17775446 ctctcaaacagtcttaaaagagcttatgtcagtagatatgctcaaataagt 17775396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 333 - 454
Target Start/End: Original strand, 43141890 - 43142012
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttcc-ataagctctctcaaacagtcttatatgtgcttatc 431  Q
    ||||| ||||| | |||||||||| |  |||||| |  |||||| ||||||||||||| ||||| |||||| || |||||| || | | |  |||||||     
T  43141890 ctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtcataagttgtttcccataagcgctgtcaaactgtttcacaattgcttatg 43141989  T
Q  432 tcagtagataagctcaaataagt 454  Q
    | |||||||||||||||||||||    
T  43141990 ttagtagataagctcaaataagt 43142012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 361 - 455
Target Start/End: Complemental strand, 43529881 - 43529787
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||| ||||| ||||| |||||| | ||| |||||  |||| |||||||| | | | ||||||||  || ||||||||||||||||||||    
T  43529881 tgaaaatagcttatgaacatggcataagctgttttcataaattctcccaaacagtgtcagaagtgcttataccaatagataagctcaaataagtc 43529787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 372 - 413
Target Start/End: Original strand, 1830103 - 1830144
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    ||||||||||||||||| | ||||||||||||||| ||||||    
T  1830103 tatggacatgtcataagatgtttccataagctctcccaaaca 1830144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 390
Target Start/End: Complemental strand, 1939371 - 1939326
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagtt 390  Q
    |||||||||||| | ||||||| || ||||||||||||||||||||    
T  1939371 gcttatggaaataagttgaaaacagcttatggacatgtcataagtt 1939326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 370 - 455
Target Start/End: Original strand, 9996794 - 9996879
Alignment:
Q  370 tttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||  |||||||||||| |||| |||||||||| ||| |||||| | | || |||||   ||| ||||||||||||||||||    
T  9996794 tttatgggtatgtcataagttgtttctataagctctcccaagcagtctcacaagtacttatgctagttgataagctcaaataagtc 9996879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 10190345 - 10190382
Alignment:
Q  393 ttccataagctctctcaaacagtcttatatgtgcttat 430  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  10190345 ttccataagctctctcaaacagtcttataagtgtttat 10190382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 378 - 451
Target Start/End: Original strand, 13866942 - 13867015
Alignment:
Q  378 catgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaata 451  Q
    ||||||||| ||| ||| | |||| ||||||||||||||| | | ||| ||||  |||||||||||||||||||    
T  13866942 catgtcataggttgttttcttaagttctctcaaacagtctcacaagtgtttatggcagtagataagctcaaata 13867015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 377 - 414
Target Start/End: Original strand, 15120246 - 15120283
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacag 414  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  15120246 acatgtcataagttgtttccataagctctcccaaacag 15120283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 25609745 - 25609786
Alignment:
Q  262 gctatttctataataaaacataaaataaagtcaagttatttt 303  Q
    ||||||||||||| |||| ||||||||||||||| |||||||    
T  25609745 gctatttctataagaaaagataaaataaagtcaatttatttt 25609786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 380 - 453
Target Start/End: Original strand, 25609862 - 25609935
Alignment:
Q  380 tgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||||||||| |||||||||||| |  ||| |||||| | | || ||||| | ||||||||||||||||||||    
T  25609862 tgtcataagttgtttccataagctattccaagcagtctcacaagttcttatgttagtagataagctcaaataag 25609935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 43065473 - 43065428
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctc 406  Q
    |||||| | ||||||||||||||||||||| ||| |||||||||||    
T  43065473 tgaaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 43205340 - 43205405
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaa 410  Q
    |||||||||||| | ||||||| |||||  |||||||| ||| ||| ||||||||||| |||||||    
T  43205340 gcttatggaaataagttgaaaacagtttgcggacatgttatatgttgtttccataagcactctcaa 43205405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 2e-18; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 339 - 455
Target Start/End: Complemental strand, 11297241 - 11297125
Alignment:
Q  339 tgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtag 438  Q
    ||||||||||||| |||| |  ||||||||| | || |||||||| |||||| |||||||||||||| ||||||||||||| | ||| ||||  || |||    
T  11297241 tgaagtgcttatgaaaataagctgaaaatagctaattgacatgtcttaagttgtttccataagctctttcaaacagtcttacaagtgtttatgccactag 11297142  T
Q  439 ataagctcaaataagtc 455  Q
    ||||||| |||||||||    
T  11297141 ataagcttaaataagtc 11297125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 347 - 455
Target Start/End: Complemental strand, 29590666 - 29590559
Alignment:
Q  347 ttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctc 446  Q
    |||||||||| | ||||||| |  ||||||||| |||||||||| | ||||||||||  |||||||||||| ||| |||||||| || ||||||||||||    
T  29590666 ttatggaaataagttgaaaacaacttatggacaagtcataagttttgtccataagctaactcaaacagtctcata-gtgcttatgtctgtagataagctc 29590568  T
Q  447 aaataagtc 455  Q
    |||||||||    
T  29590567 aaataagtc 29590559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 14980566 - 14980650
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtct-tatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||| ||||||||||||| ||||  ||||||||||||||||||||| |||| ||||||||  |||||||||||||||||||||||    
T  14980566 ttatgtacatgtcataagtcatttttataagctctctcaaacagtctctata-gtgcttatgccagtagataagctcaaataagtc 14980650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 361 - 452
Target Start/End: Original strand, 32172700 - 32172791
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||| | |||||||||||||||||||| ||||||||||||||| |||||  ||| | | ||||||||   |||| ||||||||||||||    
T  32172700 tgaaaatggcttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataa 32172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 333 - 452
Target Start/End: Complemental strand, 37611266 - 37611147
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    |||||||| || |||||||||||| |  |||||| || ||||| |||||||| ||||| ||| |||||||||||||||||| ||| | | || ||| |      
T  37611266 ctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgc 37611167  T
Q  433 cagtagataagctcaaataa 452  Q
    ||||||||||| ||||||||    
T  37611166 cagtagataagttcaaataa 37611147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 333 - 452
Target Start/End: Complemental strand, 37787996 - 37787877
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    |||||||| || |||||||||||| |  |||||| || ||||| |||||||| ||||| ||| |||||||||||||||||| ||| | | || ||| |      
T  37787996 ctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagtacttgtgc 37787897  T
Q  433 cagtagataagctcaaataa 452  Q
    ||||||||||| ||||||||    
T  37787896 cagtagataagttcaaataa 37787877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 334 - 455
Target Start/End: Original strand, 11457119 - 11457239
Alignment:
Q  334 tatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctc 433  Q
    ||||||| || |||||| ||||| || |||||  || |||||||||||||||||||| ||||||||||||||   ||||||||| | | ||| || |  |    
T  11457119 tatcttggagagcttatagaaataatatgaaac-agcttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgcc 11457217  T
Q  434 agtagataagctcaaataagtc 455  Q
    | ||||||||||||||||||||    
T  11457218 aatagataagctcaaataagtc 11457239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 38047892 - 38047847
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtc 416  Q
    |||||||||||||||||||| ||||||||||||||| |||||||||    
T  38047892 ttatggacatgtcataagttgtttccataagctctcccaaacagtc 38047847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 453
Target Start/End: Original strand, 36639541 - 36639661
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    ||||||||||| ||||||| |||| |   ||||| |  ||||||||| ||||||||  |||| | |||| ||||||||||||||||||| |||||||| |    
T  36639541 ctatcttgaagagcttatgaaaataagaggaaaacaacttatggacacgtcataagcaattttcgtaagttctctcaaacagtcttataagtgcttatgt 36639640  T
Q  433 cagtagataagctcaaataag 453  Q
     | ||| |||| |||||||||    
T  36639641 aaataggtaagttcaaataag 36639661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 345 - 413
Target Start/End: Original strand, 41052899 - 41052967
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    |||||||||||| | || ||||||||||||| |||||||||| ||| |||| |||||||||| ||||||    
T  41052899 gcttatggaaataagttaaaaatagtttatgaacatgtcataggttgtttctataagctctcccaaaca 41052967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 35960470 - 35960552
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    ||||||||||||| ||||||  ||||||||||||||||||| ||||| | || |||||||  || | |||||||||||||||||    
T  35960470 ttatggacatgtcgtaagttgcttccataagctctctcaaatagtctgacat-tgcttatgccaattgataagctcaaataagt 35960552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 499738 - 499660
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||| | ||| |||||| |||| ||||||| || | | |||||||| ||||||| ||||||||||||||||    
T  499738 acatgtcataagctgttttcataagttctcccaaacagcctaacaggtgcttatgtcagtaggtaagctcaaataagtc 499660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 35095825 - 35095720
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| | |||||||  |  |||| |||||||||||| ||||||||||||||||  |||||||||| ||  ||| |||| | ||||||||| |    
T  35095825 gcttatggaaataagttgaaaacggcatatgtacatgtcataagatatttccataagctcttccaaacagtctcattagtgtttat-ttagtagataaac 35095727  T
Q  445 tcaaata 451  Q
    |||||||    
T  35095726 tcaaata 35095720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 452
Target Start/End: Complemental strand, 11095508 - 11095427
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||||||||||||||| | |||||| ||| ||||||||||| | | | | ||| |||| |||||||||||||| ||||||    
T  11095508 ttatggacatgtcataagctgtttccacaagttctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaataa 11095427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 25720433 - 25720348
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||||| ||||||||| | || |||  ||||||||||||| ||||||| | | ||||||||  |||||||||| ||||||||||    
T  25720433 agtttatgaacatgtcatgaattgtttttataagctctctcagacagtctcacaagtgcttatgccagtagataacctcaaataag 25720348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 16016439 - 16016355
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||| ||| |||||||||||||| || |||| | | ||||||||| | | |||||||| ||| | ||||||||||||||||||    
T  16016439 ttatgggcatttcataagttatttctattagctttgtaaaacagtctgacaagtgcttatgtcatttgataagctcaaataagtc 16016355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 16944988 - 16944944
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    |||||||||| ||||||||||||||||| | ||||||||||||||    
T  16944988 ttatggacatatcataagttatttccatgacctctctcaaacagt 16944944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 361 - 453
Target Start/End: Complemental strand, 34117570 - 34117479
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||| || |||||| ||||||||||||| | ||||||||||||| || ||||||| | | ||| ||||  |||||||||||||| ||||||    
T  34117570 tgaaaacagcttatgggcatgtcataagttgtctccataagctctc-cagacagtctaacaagtgtttatgccagtagataagctccaataag 34117479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 369 - 453
Target Start/End: Complemental strand, 39257409 - 39257325
Alignment:
Q  369 gtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||||||||||||||| |||| ||||  |||||| || || ||||||| | | |||||||| | |||||||||||| |||||||    
T  39257409 gtttatggacatgtcattagttgtttctctaagctttcgcacacagtctcacaagtgcttatgttagtagataagcttaaataag 39257325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 10152391 - 10152450
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttat 430  Q
    |||||||||||||||||||| ||| |||||||||||  ||| ||||| | ||||||||||    
T  10152391 ttatggacatgtcataagttgttttcataagctctccaaaatagtctcacatgtgcttat 10152450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 347 - 406
Target Start/End: Complemental strand, 11700415 - 11700356
Alignment:
Q  347 ttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctc 406  Q
    ||||| |||| || |||||| || |||||||||||||||||||| ||||||||| |||||    
T  11700415 ttatgaaaataatctgaaaacagcttatggacatgtcataagttgtttccataaactctc 11700356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 12460013 - 12459930
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||| |||||||||||||| ||| |||| | |||| |||||||||| | | |||||||| |||| ||||||||  |||||||||    
T  12460013 tatgaacatgtcataagttgttttcataggttctcccaaacagtctcacaggtgcttatgtcagcagataagccgaaataagtc 12459930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 40499739 - 40499704
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctc 406  Q
    |||||||||||||||||||| |||||||||||||||    
T  40499739 ttatggacatgtcataagttgtttccataagctctc 40499704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 12407730 - 12407660
Alignment:
Q  384 ataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||||| |||| ||||||||||||||||| |||| | | ||| |||| ||| |||||||| ||||||||||    
T  12407730 ataagtcattttcataagctctctcaaaccgtctcacaagtgtttatgtcaatagataagttcaaataagt 12407660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 334 - 408
Target Start/End: Complemental strand, 13604899 - 13604825
Alignment:
Q  334 tatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctc 408  Q
    |||||||||| ||||||| |||| | ||||||| |   ||||||||||||||||| | ||| |||||||||||||    
T  13604899 tatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcataagctctctc 13604825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 28586789 - 28586735
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    |||||| || ||| ||| |||||||||| ||||||||||||||||| ||||||||    
T  28586789 tgaaaacagcttacggatatgtcataagctatttccataagctctcccaaacagt 28586735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 40534256 - 40534338
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||| |||||||||||| || ||||||||||||||  ||||||| | | | ||| |||| |||||| |||| ||||||||||    
T  40534256 ttatgaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtcagtaaataaactcaaataag 40534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 42646948 - 42647029
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||| |||||||||||| ||||| |||||| |||  |||| ||||||  | ||||| || ||||||||||||||||||||||    
T  42646948 ttatgaacatgtcataagctattttcataagttcttccaaatagtcttcaa-gtgctaatgtcagtagataagctcaaataag 42647029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 391 - 452
Target Start/End: Complemental strand, 7550511 - 7550450
Alignment:
Q  391 atttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||||||||||||||||| ||||| | | ||  |||| ||||| |||||||||||||||    
T  7550511 atttccataagctctctcaaagagtctcacaagtaattatgtcagtggataagctcaaataa 7550450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 378 - 411
Target Start/End: Complemental strand, 12242716 - 12242683
Alignment:
Q  378 catgtcataagttatttccataagctctctcaaa 411  Q
    ||||||||||||| ||||||||||||||||||||    
T  12242716 catgtcataagttttttccataagctctctcaaa 12242683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 450
Target Start/End: Original strand, 29336677 - 29336766
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaat 450  Q
    |||||| | |||||||  ||| |||||||| ||||||||||||||||||| |||||| | | |||||| |  || ||||||| |||||||    
T  29336677 tgaaaacattttatgggtatgccataagttgtttccataagctctctcaatcagtctcacaagtgcttttgccaatagataaactcaaat 29336766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 37968953 - 37969018
Alignment:
Q  390 tatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||| |||||| ||||||||||||| | | | || ||||| |||||||||||||||||| |||||    
T  37968953 tattttcataagatctctcaaacagtttcacaagtacttatgtcagtagataagctcaaacaagtc 37969018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 396 - 465
Target Start/End: Original strand, 38028618 - 38028687
Alignment:
Q  396 cataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaaca 465  Q
    |||||||||||| ||| ||||| ||| ||  | ||  ||||||||||||||||||||||||||| |||||    
T  38028618 cataagctctctgaaatagtctcataagttttcataccagtagataagctcaaataagtcggtccaaaca 38028687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 333 - 415
Target Start/End: Complemental strand, 31875646 - 31875564
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    ||||||| ||| ||||||| |||| | |||||||| | |||||||||||||||||||| |||||||||||| |||||||||||    
T  31875646 ctatcttcaagagcttatgaaaataagttgaaaatggcttatggacatgtcataagttgtttccataagctttctcaaacagt 31875564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 349 - 455
Target Start/End: Original strand, 12361227 - 12361335
Alignment:
Q  349 atggaaatcatttgaaaatagtttatggacatgtcataagttatttccataag--ctctctcaaacagtcttatatgtgcttatctcagtagataagctc 446  Q
    |||||||| | ||||||| || |||||||||||||||||| |||||| |||||  |||||||||| ||||| | | || ||||| |||||||||||| ||    
T  12361227 atggaaataagttgaaaacagcttatggacatgtcataagctatttctataagatctctctcaaagagtctaacaagtacttatatcagtagataagttc 12361326  T
Q  447 aaataagtc 455  Q
    |||||||||    
T  12361327 aaataagtc 12361335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 363 - 414
Target Start/End: Complemental strand, 30988012 - 30987961
Alignment:
Q  363 aaaatagtttatggacatgtcataagttatttccataagctctctcaaacag 414  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  30988012 aaaatagcttatggacatgtcataagttgtttccataagctctctcaaacag 30987961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 43709309 - 43709403
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttata--tgtgcttatctcagtagataagctcaaataag 453  Q
    ||||||||| |||| ||||||||||||||||||||||||||||| | |||||| ||| |||  ||||| | || || ||||||||||||||||||    
T  43709309 tgaaaatagcttatagacatgtcataagttatttccataagctcacccaaacactctcataagtgtgcatgtcacaatagataagctcaaataag 43709403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 345 - 414
Target Start/End: Original strand, 8558691 - 8558760
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacag 414  Q
    ||||||| |||| || ||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||    
T  8558691 gcttatgaaaataatctgaaaatagttgatggacatgtcacaagttgtttccataagctctcccaaacag 8558760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 377 - 453
Target Start/End: Complemental strand, 30191148 - 30191072
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||||||||||| ||||||||||||||| |||||||||| | | ||||||||  || ||||||| ||||||||||    
T  30191148 acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 361 - 415
Target Start/End: Complemental strand, 4055639 - 4055585
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    |||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||    
T  4055639 tgaaaacagtttatggacatgtcataagttatttctataaactctcccaaacagt 4055585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 4560533 - 4560643
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||| ||||| || |||||| || |||  ||||||| |||||||||||||||||| |||  ||||||  || | | |||||||| ||| |||||||||    
T  4560533 gcttatcgaaataatctgaaaacagcttactgacatgttataagttatttccataagttcttccaaacaacctcacaagtgcttatgtcaatagataagc 4560632  T
Q  445 tcaaataagtc 455  Q
    |||||||||||    
T  4560633 tcaaataagtc 4560643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 373 - 450
Target Start/End: Original strand, 21130671 - 21130748
Alignment:
Q  373 atggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaat 450  Q
    |||||||||||| ||| |||||||||||||||||||||||||||| | | ||  |||| |||| | ||||||||||||    
T  21130671 atggacatgtcaaaagctatttccataagctctctcaaacagtctcacaagtatttatgtcagcacataagctcaaat 21130748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 361 - 417
Target Start/End: Original strand, 14949913 - 14949969
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||| || |||||||||||||||||||||||| |||||||||||  |||||||||    
T  14949913 tgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtct 14949969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 24326109 - 24326167
Alignment:
Q  392 tttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaat 450  Q
    ||||||||||||||| |||||||||| | | ||||||||  ||||||||||||||||||    
T  24326109 tttccataagctctcccaaacagtctcacaagtgcttatgccagtagataagctcaaat 24326167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 345 - 419
Target Start/End: Original strand, 27645935 - 27646009
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtctta 419  Q
    |||||| ||||| | |||||||||| |||| || |||||||||||| | | ||||||||||||||||| ||||||    
T  27645935 gcttatagaaataagttgaaaatagcttatagatatgtcataagttgtatgcataagctctctcaaacggtctta 27646009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 464
Target Start/End: Original strand, 4511061 - 4511178
Alignment:
Q  347 ttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctc 446  Q
    |||||||||| |  ||||||||| ||| || |||||| |||||| ||| |||||| ||| || || ||||| | | ||||||||  |||||||||||||     
T  4511061 ttatggaaataaaatgaaaatagcttacgggcatgtcttaagttgttttcataagttctttcgaatagtctcacaagtgcttataccagtagataagcta 4511160  T
Q  447 aaataagtcggtctaaac 464  Q
    ||| ||||||||| ||||    
T  4511161 aaacaagtcggtccaaac 4511178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 5069754 - 5069836
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||| |||||| ||||| | ||||||||||||||||||||||||||  || ||  || | ||||||||||||| ||||||||||    
T  5069754 ttatgaacatgttataagatgtttccataagctctctcaaacagtct--tacgtcattctgtcagtagataagcacaaataagtc 5069836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 6509326 - 6509273
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacag 414  Q
    |||||||||||||| | ||||||||||| | |||| ||||||||||||||||||    
T  6509326 tgaaaatagtttataggcatgtcataagctgtttctataagctctctcaaacag 6509273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 454
Target Start/End: Original strand, 9700048 - 9700141
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||||| || ||||||||||||||||| ||  || || ||||||||||||| ||||| | | ||| ||||   |||||||||||||||||||||    
T  9700048 tgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagt 9700141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 37461205 - 37461246
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtctt 418  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  37461205 acatgtcataagttatttccataaactctctcatacagtctt 37461246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 39551219 - 39551138
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||||||||||| |||||||||  |||| |||||||| | | |  ||||||| || |||||||| ||||||||||||    
T  39551219 tggacatgtcataagttgtttccataaattctcccaaacagtttcacaaatgcttatatccgtagataatctcaaataagtc 39551138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 375 - 455
Target Start/End: Original strand, 7008660 - 7008739
Alignment:
Q  375 ggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||| ||| |||| |||||||||||| ||| |||| | | ||||||||  |||||||||| ||||||||||||    
T  7008660 ggacatgtcataggttgtttctataagctctctctaac-gtctcacaagtgcttatgccagtagataaactcaaataagtc 7008739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 333 - 417
Target Start/End: Complemental strand, 7918497 - 7918413
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||| || |||||| ||||| | ||| ||| || ||||| ||||||| |||||| ||| ||||||||||| ||||||||||    
T  7918497 ctatcttggagagcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagtct 7918413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 399 - 455
Target Start/End: Complemental strand, 11059714 - 11059658
Alignment:
Q  399 aagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||| || ||||||||||| |||||||| ||| |||||||||||| |||||||    
T  11059714 aagctctcccagacagtcttataagtgcttatgtcattagataagctcacataagtc 11059658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 40071806 - 40071890
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||| |||||||||||||| ||||||||||||||| |||||| ||| | |||| | |||   || ||||||||||||| |||||    
T  40071806 ttatgaacatgtcataagttgtttccataagctctcccaaacactctcacatgttcatatggtaggagataagctcaaagaagtc 40071890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 455
Target Start/End: Complemental strand, 3634664 - 3634613
Alignment:
Q  404 ctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||| | |||| ||| |||| |||||||||||||||||||    
T  3634664 ctctcaaacagtcttacaagtgcatatgtcagcagataagctcaaataagtc 3634613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 446
Target Start/End: Complemental strand, 11569470 - 11569395
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctc 446  Q
    ||||| |||||||||||| | |||||||||||||||| ||||||||| | | ||| ||||  ||| ||||||||||    
T  11569470 ttatgtacatgtcataagctgtttccataagctctcttaaacagtctcacaagtggttatgccagcagataagctc 11569395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 360 - 455
Target Start/End: Complemental strand, 43368724 - 43368629
Alignment:
Q  360 ttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||| | ||| |||||||||||||| ||| |||||||| |  ||| |||||| | |  ||||||| | |||||||||| |||||||||||    
T  43368724 ttgaaaatagctaatgaacatgtcataagttgttttcataagctgttacaaccagtctcacaaatgcttatgttagtagataagatcaaataagtc 43368629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 6950353 - 6950463
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| |  |||||| |  |||| ||||||||||| ||| ||| ||||||||||| |||||| ||| | |  || ||||  |||||||||| |    
T  6950353 gcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaac 6950452  T
Q  445 tcaaataagtc 455  Q
    |||||||||||    
T  6950453 tcaaataagtc 6950463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 413
Target Start/End: Complemental strand, 9541009 - 9540967
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    |||||||||||||||||| | ||||||||||||||| ||||||    
T  9541009 ttatggacatgtcataagatgtttccataagctctcccaaaca 9540967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 9572927 - 9572973
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||||||||||||||||| | |||| |||| ||||||||||    
T  9572927 ttatggacatgtcataagttattttcgtaagttctcacaaacagtct 9572973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 382 - 452
Target Start/End: Complemental strand, 18931300 - 18931230
Alignment:
Q  382 tcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||||||  ||||||||||||||| |||||||||  |  |||||||| ||  |||||||||||||||||    
T  18931300 tcataagtttcttccataagctctcttaaacagtctcttgagtgcttatgtctatagataagctcaaataa 18931230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 348 - 406
Target Start/End: Complemental strand, 37740462 - 37740405
Alignment:
Q  348 tatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctc 406  Q
    ||||||||| |  ||||||||||| |||||||||||||||||| ||||||||| |||||    
T  37740462 tatggaaataagctgaaaatagtt-atggacatgtcataagttgtttccataaactctc 37740405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 295
Target Start/End: Complemental strand, 1470977 - 1470944
Alignment:
Q  262 gctatttctataataaaacataaaataaagtcaa 295  Q
    |||||||||||||||||| |||||||||||||||    
T  1470977 gctatttctataataaaagataaaataaagtcaa 1470944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 4558747 - 4558788
Alignment:
Q  262 gctatttctataataaaacataaaataaagtcaagttatttt 303  Q
    |||||||||||||||||| |||||||||||| || |||||||    
T  4558747 gctatttctataataaaagataaaataaagttaaattatttt 4558788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 11183576 - 11183682
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| |  |||||| || |||| ||||| ||||||||| |||  |||||||||||  || |||||   ||| |||| | |||||||||||||    
T  11183576 gcttatggaaataagctgaaaacagcttatagacatatcataagttgtttttataagctctct--aagagtctcccatgagcttttgtcagtagataagc 11183673  T
Q  445 tcaaataag 453  Q
    |||||||||    
T  11183674 tcaaataag 11183682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 380 - 449
Target Start/End: Complemental strand, 25881419 - 25881350
Alignment:
Q  380 tgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaa 449  Q
    ||||||||||| ||||  |||||||| ||||||||||| | | || ||||| ||||||||||| ||||||    
T  25881419 tgtcataagttgtttctctaagctctttcaaacagtctcacaagtacttatgtcagtagataaactcaaa 25881350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 29168687 - 29168642
Alignment:
Q  362 gaaaatagtttatggacatgtcataagttatttccataagctctct 407  Q
    |||||||| |||||||||||||||||| | ||| ||||||||||||    
T  29168687 gaaaatagcttatggacatgtcataagctgttttcataagctctct 29168642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 351 - 400
Target Start/End: Complemental strand, 29262907 - 29262858
Alignment:
Q  351 ggaaatcatttgaaaatagtttatggacatgtcataagttatttccataa 400  Q
    |||||| | |||||||||| ||||| |||||||||||||| |||||||||    
T  29262907 ggaaattacttgaaaatagcttatgaacatgtcataagttgtttccataa 29262858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 27626174 - 27626052
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    ||||| ||||| |||||||||||| | || |||| ||||||||||||||||||||| | |||||||||||| ||||||||| ||| | | | ||| |  |    
T  27626174 ctatcatgaagagcttatggaaataagtttaaaacagtttatggacatgtcataagctgtttccataagctttctcaaacaatctcacaagagctgacgt 27626075  T
Q  433 cagtagataagctcaaataagtc 455  Q
    ||||||||||||| ||| |||||    
T  27626074 cagtagataagctgaaacaagtc 27626052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 48157158 - 48157049
Alignment:
Q  346 cttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagct 445  Q
    ||||||||||| |  |||||| || ||||||||||| |||||||| |||| |||||||||| |||||||||| | |  ||||||  |||||| |||||||    
T  48157158 cttatggaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacagtctcacaaatgcttaaatcagtaaataagct 48157059  T
Q  446 caaataagtc 455  Q
    ||||||||||    
T  48157058 caaataagtc 48157049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 361 - 453
Target Start/End: Complemental strand, 36598379 - 36598287
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||| || ||||| |||||||||||| | |||||||||||||||||||||| ||| | |  ||||||| ||||||| |||| |||||||||    
T  36598379 tgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaagttcaaataag 36598287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 361 - 455
Target Start/End: Original strand, 1418468 - 1418560
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||||   |||  | |||| |||||||||| ||||||| || ||| ||||||||  |||||||||||||||||||||||    
T  1418468 tgaaaatagtttatggacatggtgtaa--tgtttctataagctctcacaaacagcctcataagtgcttatgccagtagataagctcaaataagtc 1418560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 376 - 455
Target Start/End: Complemental strand, 39542308 - 39542229
Alignment:
Q  376 gacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||||||||||||||| |||| ||||   | ||||||||   ||||||||| ||||||||||||    
T  39542308 gacatgtcataagttatttccataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataagtc 39542229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 33894684 - 33894766
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||||||||||||| | | ||| ||||||||||| |||||||||| | | |||||||| ||| | ||||||||||||||||    
T  33894684 ttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagctcaaataag 33894766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 44808183 - 44808261
Alignment:
Q  339 tgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    ||||| ||||||| |||| |  |||||| || |||||||||||||||||||||||| |||||| ||| |||||||||||    
T  44808183 tgaagggcttatgaaaataagctgaaaacaggttatggacatgtcataagttattttcataaggtctatcaaacagtct 44808261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 368 - 452
Target Start/End: Original strand, 8427067 - 8427151
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||||||||| ||| |||||| |||||||| |||| | |||||||||| | | || ||||| | |||||||||||||||||||    
T  8427067 agtttatggacacgtcgtaagttgtttccataggctcccccaaacagtctcacaagtacttatgttagtagataagctcaaataa 8427151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 23214912 - 23214996
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||| |||||||||||| ||| |||||  ||||||||||||||| ||| ||| ||||   |||||||||| |||||||||||    
T  23214912 ttatggaaatgtcataagttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataaggtcaaataagtc 23214996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 373 - 452
Target Start/End: Complemental strand, 30749045 - 30748966
Alignment:
Q  373 atggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||||||| |||  || ||| |||||| ||||||||||||||| | ||  |||||| |||||||||||||||||||||    
T  30749045 atggacatgttatagattgttttcataagttctctcaaacagtctcacattggcttatgtcagtagataagctcaaataa 30748966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 350 - 449
Target Start/End: Original strand, 45078314 - 45078413
Alignment:
Q  350 tggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaa 449  Q
    ||||||| | ||||||| || ||||||||||||||||||||||||| ||||| ||||   ||| |||  | | |||||||| ||||||||||| ||||||    
T  45078314 tggaaataagttgaaaacagcttatggacatgtcataagttatttctataagttctcctgaactgtcacacaagtgcttatatcagtagataaactcaaa 45078413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 364 - 406
Target Start/End: Original strand, 5269536 - 5269578
Alignment:
Q  364 aaatagtttatggacatgtcataagttatttccataagctctc 406  Q
    |||||||||||||||||||| |||| |||||||||||||||||    
T  5269536 aaatagtttatggacatgtcgtaagctatttccataagctctc 5269578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 12234928 - 12234818
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| |  |||||| || |||| ||||||||||||||| |||| ||||||| |  ||| |||||| | | ||||| ||  ||||||||||||    
T  12234928 gcttatggaaataagctgaaaacagcttatagacatgtcataagttgtttctataagctattccaagcagtctcacacgtgctaatgccagtagataagc 12234829  T
Q  445 tcaaataagtc 455  Q
    |||| ||||||    
T  12234828 tcaactaagtc 12234818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 345 - 443
Target Start/End: Complemental strand, 22387935 - 22387837
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataag 443  Q
    |||||||||||| | || |||| |||||||  ||||| |||||||| ||| ||||||||||| |||||||||| | | ||| |||| |||||| |||||    
T  22387935 gcttatggaaataagttaaaaacagtttataaacatgccataagttgttttcataagctctcccaaacagtctcacacgtgtttatgtcagtaaataag 22387837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 377 - 455
Target Start/End: Complemental strand, 25670593 - 25670515
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||| ||| |||||| | ||||||||||||| | | | |||||| ||| ||||||||||||| ||||||    
T  25670593 acatgtcataagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaatagataagctcaagtaagtc 25670515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 454
Target Start/End: Original strand, 30751566 - 30751659
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||||| ||||||||||||||  ||||  | |||| |||||||||| |||||||||  | | |||||||| |||||||||||| | ||||||||    
T  30751566 tgaaaacagtttatggacatgctataaactgtttctataagctctcccaaacagtcgcacaagtgcttatgtcagtagataagtttaaataagt 30751659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 24048599 - 24048680
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    ||||||||||| |||||| || |  ||||||||||  ||||||||||| || || ||||| ||||||||||| |||||||||||    
T  24048599 ttatggacatgacataagctaat--cataagctcttccaaacagtcttttaagtacttatgtcagtagataaactcaaataagt 24048680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 379 - 455
Target Start/End: Original strand, 31341200 - 31341276
Alignment:
Q  379 atgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||| |||| ||||||||| ||||| |||||||||||| | ||| ||||   |||||| |||||||||||||||    
T  31341200 atgtcattagttgtttccataaactctcccaaacagtcttaaaagtgtttatgcaagtagaaaagctcaaataagtc 31341276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 36370688 - 36370760
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctct 405  Q
    ||||| ||||| |||||||||||| | || ||||| |||||||||||||||  ||||| ||| ||||||||||    
T  36370688 ctatcctgaagagcttatggaaataaattaaaaatcgtttatggacatgtcccaagtttttttcataagctct 36370760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 39551561 - 39551477
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||| ||||||||| |||| ||| ||| | ||||| ||  |||| | |||||| || ||||||||||||    
T  39551561 ttatggacatgtcataagttgtttccataacctctttcagacaattttataagtcattatgtaagtagaaaaactcaaataagtc 39551477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 47427323 - 47427275
Alignment:
Q  364 aaatagtttatggacatgtcataagttatttccataagctctctcaaac 412  Q
    |||||| |||| || |||||||||||| |||||||||||||||||||||    
T  47427323 aaatagcttatagagatgtcataagttgtttccataagctctctcaaac 47427275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 411
Target Start/End: Complemental strand, 3501003 - 3500940
Alignment:
Q  348 tatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaa 411  Q
    ||||||||| |  |||||| || | ||| |||||||||||||||||||||||||||||| ||||    
T  3501003 tatggaaataagctgaaaacagctgatgtacatgtcataagttatttccataagctctcacaaa 3500940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 448
Target Start/End: Original strand, 28165122 - 28165225
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| | ||||||| || ||||| ||| ||| | || | |||||||||||| ||||||| ||||| ||| ||||||||    ||||||||||    
T  28165122 gcttatggaaataagttgaaaacagcttatgaacaggtcttgagctgtttccataagctatctcaaagagtctcataagtgcttatgctggtagataagc 28165221  T
Q  445 tcaa 448  Q
    ||||    
T  28165222 tcaa 28165225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 342 - 401
Target Start/End: Original strand, 29290361 - 29290420
Alignment:
Q  342 agtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataag 401  Q
    |||||||| ||||||   ||||||| || |||||||||||||||||||| ||||||||||    
T  29290361 agtgcttacggaaatatgttgaaaacagcttatggacatgtcataagttgtttccataag 29290420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 380 - 455
Target Start/End: Complemental strand, 34754814 - 34754739
Alignment:
Q  380 tgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||| | ||| | |||||||||||||||||||| ||| ||| || | ||| |||||||||||||| |||||    
T  34754814 tgtcataagatgttttcttaagctctctcaaacagtctcataagtgtttgtgtcaatagataagctcaaacaagtc 34754739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 405
Target Start/End: Complemental strand, 44989943 - 44989908
Alignment:
Q  370 tttatggacatgtcataagttatttccataagctct 405  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44989943 tttatggacatgtcataagctatttccataagctct 44989908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 379 - 453
Target Start/End: Complemental strand, 3836688 - 3836614
Alignment:
Q  379 atgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||||||| ||||| |||||| |||| |||||||| | | | |||||||   |||||||||||||||||||||    
T  3836688 atgtcataagctattttcataagttctcccaaacagtttcacaagtgcttaagccagtagataagctcaaataag 3836614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 345 - 451
Target Start/End: Complemental strand, 27121632 - 27121527
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||  | ||||||| || |||| || |||||||||| ||||||||||| ||||| |||||| ||| | |  ||||||| | |||| ||||||    
T  27121632 gcttatggaaacaagttgaaaacagcttattga-atgtcataagctatttccataaactctcccaaacaatctcacagatgcttatattagtaaataagc 27121534  T
Q  445 tcaaata 451  Q
    |||||||    
T  27121533 tcaaata 27121527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 413
Target Start/End: Original strand, 36537965 - 36538007
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    ||||| |||||||||||||| |||||||||| |||||||||||    
T  36537965 ttatgaacatgtcataagttgtttccataagttctctcaaaca 36538007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 39360080 - 39360126
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    ||||||| |||||||||||| ||||||||| |||| |||||||||||    
T  39360080 ttatggatatgtcataagttgtttccataaactctatcaaacagtct 39360126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 262 - 304
Target Start/End: Original strand, 49060489 - 49060531
Alignment:
Q  262 gctatttctataataaaacataaaataaagtcaagttattttt 304  Q
    ||||||||||||| |||| ||||||||||||||| ||||||||    
T  49060489 gctatttctataacaaaaaataaaataaagtcaaattattttt 49060531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 334 - 395
Target Start/End: Original strand, 2013214 - 2013275
Alignment:
Q  334 tatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttc 395  Q
    |||||||||||| |||||||||| | ||||| | |||| ||||||| |||||||||| ||||    
T  2013214 tatcttgaagtgattatggaaataaattgaagacagttgatggacaagtcataagttgtttc 2013275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 375 - 452
Target Start/End: Complemental strand, 2727367 - 2727290
Alignment:
Q  375 ggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||||| |||  ||||| ||||||||||||||||||   | | | |||||||| |||||||||||| ||||||||    
T  2727367 ggacatgtcgtaacctattttcataagctctctcaaacaaattgacacgtgcttatgtcagtagataagttcaaataa 2727290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 430
Target Start/End: Complemental strand, 12834985 - 12834916
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttat 430  Q
    |||||| ||||||||||||||||||||| | ||||||||| ||||  ||| |||||| | | ||||||||    
T  12834985 tgaaaacagtttatggacatgtcataagctgtttccataatctctaccaatcagtctcagaagtgcttat 12834916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 453
Target Start/End: Complemental strand, 20547406 - 20547321
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||||| ||||||||||| | | | |||||||||||||||||||||| | | | ||| |||| ||| ||||||| || |||||||    
T  20547406 agtttatcgacatgtcataggctgtctccataagctctctcaaacagtatcacaagtgtttatgtcattagataaactaaaataag 20547321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 417
Target Start/End: Original strand, 25422380 - 25422429
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||  |||||||||||| | ||||||||||||||| ||||||||||    
T  25422380 agtttataaacatgtcataaggtgtttccataagctctcccaaacagtct 25422429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 408
Target Start/End: Complemental strand, 33645974 - 33645937
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctc 408  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  33645974 ttatagacatgtcataagttgtttccataagctctctc 33645937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 400
Target Start/End: Complemental strand, 39568337 - 39568308
Alignment:
Q  371 ttatggacatgtcataagttatttccataa 400  Q
    ||||||||||||||||||||||||||||||    
T  39568337 ttatggacatgtcataagttatttccataa 39568308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 44151531 - 44151405
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataag----ttatttccataagctctctcaaacagtcttatatgtgctt 428  Q
    ||||||||||  |||||||||||| |  |||||| |  |||||||||||||||||     || ||| |||||||||||||||| | ||| | | || |||    
T  44151531 ctatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcataaaaaaattgttttcataagctctctcaaataatctcacaagtactt 44151432  T
Q  429 atctcagtagataagctcaaataagtc 455  Q
    || |||||| ||||| |||||||||||    
T  44151431 atgtcagtatataagttcaaataagtc 44151405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 44686976 - 44687021
Alignment:
Q  360 ttgaaaatagtttatggacatgtcataagttatttccataagctct 405  Q
    ||||||| || | |||||||||||||||||| ||||||||||||||    
T  44686976 ttgaaaacagctcatggacatgtcataagttgtttccataagctct 44687021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 4e-16; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 333 - 417
Target Start/End: Original strand, 37273153 - 37273237
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||| ||  ||||||||||| | ||||||| |  |||||||||||||||||||| ||||||||||||||| ||||||||||    
T  37273153 ctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtct 37273237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 350 - 465
Target Start/End: Complemental strand, 52323928 - 52323813
Alignment:
Q  350 tggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaa 449  Q
    ||||||| | ||||||| || |||||||| |||||||| ||||||| |||||||||| |||||||||||  | |||||||| | ||||||| | |||||     
T  52323928 tggaaataagttgaaaacagcttatggacgtgtcataaattatttcaataagctctcacaaacagtcttgcaagtgcttatgttagtagatcaactcaat 52323829  T
Q  450 taagtcggtctaaaca 465  Q
    ||||||  ||||||||    
T  52323828 taagtcaatctaaaca 52323813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 368 - 454
Target Start/End: Complemental strand, 21872311 - 21872225
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    ||||||||||||||||||||| ||||| || ||||| |  |||||||||| | | |||||||| |||||||||||| ||||||||||    
T  21872311 agtttatggacatgtcataagctattttcaaaagcttttccaaacagtctcacaagtgcttatgtcagtagataagatcaaataagt 21872225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 455
Target Start/End: Complemental strand, 25183008 - 25182919
Alignment:
Q  363 aaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||| ||||||| |||||||||||| ||| |||||||||||||||||||||| | | || |||||   ||||| ||||||||||||||||    
T  25183008 aaaatagcttatggatatgtcataagttgttttcataagctctctcaaacagtctcacaagttcttat---agtaggtaagctcaaataagtc 25182919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 345 - 442
Target Start/End: Complemental strand, 20192645 - 20192548
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataa 442  Q
    |||||||||||| | ||||||| || |||||||||||||||||| | |||| ||||||||||||| ||||| | | | |||||||| ||| |||||||    
T  20192645 gcttatggaaatgagttgaaaacagcttatggacatgtcataagctgtttctataagctctctcatacagtgtaagaagtgcttatgtcaatagataa 20192548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 22667481 - 22667542
Alignment:
Q  392 tttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||||||| |||||||||||||||| | | |||||||| ||||||||||||||||||||||    
T  22667481 tttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22667542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 22724120 - 22724181
Alignment:
Q  392 tttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||||||| |||||||||||||||| | | |||||||| ||||||||||||||||||||||    
T  22724120 tttccataaactctctcaaacagtctcacaagtgcttatgtcagtagataagctcaaataag 22724181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 330 - 411
Target Start/End: Complemental strand, 49465990 - 49465909
Alignment:
Q  330 aatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaa 411  Q
    |||||||| | ||| | |||||||||| | |||||||||||| |||||||||||||||||| |||| |||||||||| ||||    
T  49465990 aatctatcctaaagagtttatggaaataagttgaaaatagttcatggacatgtcataagttgtttctataagctctcacaaa 49465909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 24624257 - 24624349
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||| ||||||||||||||||||||| | ||| ||||||||||  |||||||||||| | ||||| || | |||||||||| |||| ||||    
T  24624257 tgaaaacagtttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaactaag 24624349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 333 - 451
Target Start/End: Complemental strand, 33965540 - 33965421
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatt-tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatc 431  Q
    ||||||||||| |||||||||||  |   ||||||||  |||||| ||||||||| | |||||||||||| ||||  ||||||||| | ||||| |||      
T  33965540 ctatcttgaagagcttatggaaaaaaagctgaaaataacttatgggcatgtcatatgctatttccataaggtctcctaaacagtctcacatgtgtttaag 33965441  T
Q  432 tcagtagataagctcaaata 451  Q
    ||||||||||||||||||||    
T  33965440 tcagtagataagctcaaata 33965421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 392 - 450
Target Start/End: Complemental strand, 11041218 - 11041160
Alignment:
Q  392 tttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaat 450  Q
    |||||||||||||||||||||||||  | | |||||||||| |||||||||||||||||    
T  11041218 tttccataagctctctcaaacagtcccacaagtgcttatcttagtagataagctcaaat 11041160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 50211805 - 50211875
Alignment:
Q  384 ataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    ||||||| ||| |||||| ||||||||||||||||| | |||||||| | |||||||||||| ||||||||    
T  50211805 ataagttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataagctaaaataagt 50211875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 361 - 466
Target Start/End: Complemental strand, 36646405 - 36646300
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtct 460  Q
    |||||| || ||||||||||| |||||||  ||||||||||||||| |||| ||||||| | |||| |||  || |||||| ||| |||||||||| ||     
T  36646405 tgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatagtcttacaagtgcctatgccaatagatatgcttaaataagtcgatcc 36646306  T
Q  461 aaacaa 466  Q
    ||||||    
T  36646305 aaacaa 36646300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 371 - 452
Target Start/End: Original strand, 41724269 - 41724350
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||||||||||||||||| |||||||||| | || ||||| |||| | | || ||||| |||||||||||| ||||||||    
T  41724269 ttatggacatgtcataagttgtttccataagttttcacaaactgtctgacaagtacttatgtcagtagataagttcaaataa 41724350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 376 - 455
Target Start/End: Complemental strand, 11039786 - 11039707
Alignment:
Q  376 gacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||| || |||| |||||| | |||||||||||||| |||| ||||| |||||| ||||| |||||||| |||||||    
T  11039786 gacatgttattagttgtttccaaatgctctctcaaacagccttacatgtgtttatcttagtagctaagctcagataagtc 11039707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 464
Target Start/End: Original strand, 24281104 - 24281197
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtcggtctaaac 464  Q
    ||||||| || ||||||||| ||| |||||||||||||||||| ||  | | ||||||||  |||||||||  ||||||||||||  |||||||    
T  24281104 ttatggagatatcataagttgttttcataagctctctcaaacaatcacacaagtgcttataccagtagatagactcaaataagtcaatctaaac 24281197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 455
Target Start/End: Complemental strand, 40880954 - 40880877
Alignment:
Q  378 catgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||||||| ||| |||||||||||||||||||||| |  | || | || ||| |||||||||| |||||||||    
T  40880954 catgtcataagttgttttcataagctctctcaaacagtctcacgtatgttcatttcaatagataagcttaaataagtc 40880877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 1810036 - 1810080
Alignment:
Q  373 atggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||||||||||| ||||| |||||||||||||| |||||    
T  1810036 atggacatgtcataagttgtttccgtaagctctctcaaatagtct 1810080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 453
Target Start/End: Complemental strand, 24158515 - 24158447
Alignment:
Q  385 taagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||| ||||||||||||||| |||||||| | | | || ||||| |||||||||||||| |||||||    
T  24158515 taagttgtttccataagctctcgcaaacagtttcacaagtacttatgtcagtagataagcttaaataag 24158447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 27792938 - 27793010
Alignment:
Q  380 tgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||| ||| ||||||||||| |||| ||||||||||| |  |||| |||| ||| |||||||||||||||||    
T  27792938 tgtcaaaagctatttccataaactctatcaaacagtctcacgtgtgtttatgtcaatagataagctcaaataa 27793010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 36200153 - 36200237
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||| ||| || || ||||||| |||| ||| | | |||||  | ||| ||||||||||||||||||||    
T  36200153 ttatggacatgtcataagttgtttacaaaaactctctccaacattctcacaagtgctgttttcattagataagctcaaataagtc 36200237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 37155058 - 37155138
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaata 451  Q
    |||||||||||| ||||||||||||||||| |||| || |||||||| | |  || |||| | ||||||| ||||||||||    
T  37155058 ttatggacatgtaataagttatttccataaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaata 37155138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 451
Target Start/End: Original strand, 37200413 - 37200493
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaata 451  Q
    |||||||||||| ||||||||||||||||| |||| || |||||||| | |  || |||| | ||||||| ||||||||||    
T  37200413 ttatggacatgtaataagttatttccataaactctttcgaacagtctcacaaatgtttatgtaagtagattagctcaaata 37200493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 377 - 448
Target Start/End: Original strand, 50004715 - 50004787
Alignment:
Q  377 acatgtcataagttatttccataa-gctctctcaaacagtcttatatgtgcttatctcagtagataagctcaa 448  Q
    |||||||||||||| ||||||||| || |||||||||||||||| |  ||||||| |||||| |||| |||||    
T  50004715 acatgtcataagttgtttccataaggccctctcaaacagtcttacaattgcttatgtcagtaaataaactcaa 50004787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 416
Target Start/End: Complemental strand, 2606317 - 2606278
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtc 416  Q
    |||||||||||||| |||||||||| ||||||||||||||    
T  2606317 acatgtcataagttgtttccataagatctctcaaacagtc 2606278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 377 - 452
Target Start/End: Complemental strand, 10540500 - 10540425
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||||||| || |||||||||||||||  ||| ||||| ||| |||||||| | | ||||||| |||||||||    
T  10540500 acatgtcataaattgtttccataagctctcctaaagagtctgataagtgcttatgtgaatagataaactcaaataa 10540425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 14598566 - 14598523
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacag 414  Q
    |||||||||||||||||||||||||||||| ||| | |||||||    
T  14598566 ttatggacatgtcataagttatttccataaactcccccaaacag 14598523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 42817235 - 42817192
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacag 414  Q
    |||||||||||||||| | | |||||||||||||||||||||||    
T  42817235 ttatggacatgtcatatgctgtttccataagctctctcaaacag 42817192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 11039352 - 11039306
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||||||||||  | |||||||||||||| |||||||||||    
T  11039352 ttatggacatgtcataatatgtttccataagctctttcaaacagtct 11039306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 21574547 - 21574593
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    ||||| |||||||||||||| ||| ||||||||||| ||||||||||    
T  21574547 ttatgaacatgtcataagttgttttcataagctctcccaaacagtct 21574593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 345 - 455
Target Start/End: Original strand, 26603224 - 26603334
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| | |||||| ||   ||||||||||||||||||| ||||||| |||||   |||||| ||| | ||||||||||  |||||| |||      
T  26603224 gcttatggaaataagttgaaattaaaatatggacatgtcataagttgtttccatgagctccaccaaacaatctcacatgtgcttatgacagtaggtaaat 26603323  T
Q  445 tcaaataagtc 455  Q
    |||||| ||||    
T  26603324 tcaaatcagtc 26603334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 413
Target Start/End: Original strand, 31403075 - 31403117
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||    
T  31403075 ttatagacatgtaataagttgtttccataagctctctcaaaca 31403117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 49772681 - 49772635
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    |||||||||| ||||||||| |||||||||||||||  |||||||||    
T  49772681 ttatggacatctcataagttgtttccataagctctcctaaacagtct 49772635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 1395620 - 1395661
Alignment:
Q  262 gctatttctataataaaacataaaataaagtcaagttatttt 303  Q
    ||||||||||||| |||| ||||||||||||||| |||||||    
T  1395620 gctatttctataacaaaagataaaataaagtcaaattatttt 1395661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 396 - 453
Target Start/End: Complemental strand, 25699186 - 25699129
Alignment:
Q  396 cataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||||||||||||  ||||| ||| |||||||| ||| ||||||| ||||||||||    
T  25699186 cataagctctctcaagaagtctcataagtgcttatgtcaatagataaactcaaataag 25699129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 345 - 442
Target Start/End: Original strand, 43115087 - 43115184
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataa 442  Q
    |||||||||||| |  |||||| |  |||||||||||||||||||| ||||||||| ||||  |||||| ||| | | ||| |||| ||| |||||||    
T  43115087 gcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataa 43115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 374 - 443
Target Start/End: Complemental strand, 53735982 - 53735913
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataag 443  Q
    ||||||||||||||||| |||| ||||| ||||||||||| ||| ||  ||| |||| |||||| |||||    
T  53735982 tggacatgtcataagttgtttcaataagttctctcaaacaatctcattagtgtttatgtcagtaaataag 53735913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 363 - 453
Target Start/End: Original strand, 1662622 - 1662712
Alignment:
Q  363 aaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||| ||||||||||||||||||||| ||||| ||||||||| |||| |||||   |||| |||||   ||||||||||||||||||||    
T  1662622 aaaatattttatggacatgtcataagttgtttccgtaagctctcgcaaatagtctcgcatgtacttatgctagtagataagctcaaataag 1662712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 345 - 455
Target Start/End: Complemental strand, 30259525 - 30259415
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    |||||||||||| | ||||||| | ||||| |||||||| |||||| |||| ||||||||| |||||||| |||| ||||| ||||  | |||| ||| |    
T  30259525 gcttatggaaataagttgaaaacaatttattgacatgtcgtaagttgtttctataagctctttcaaacagccttaaatgtgtttatgccggtaggtaaac 30259426  T
Q  445 tcaaataagtc 455  Q
    |||||||||||    
T  30259425 tcaaataagtc 30259415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 5592004 - 5591896
Alignment:
Q  346 cttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagct 445  Q
    ||||||||||| | |||||||  | ||||| || ||||||||| | ||| ||||||||||||||||||||| || |  |||||||  |||||||||||||    
T  5592004 cttatggaaataaattgaaaacggcttatgcacgtgtcataagctgttttcataagctctctcaaacagtc-tacacatgcttataccagtagataagct 5591906  T
Q  446 caaataagtc 455  Q
    ||||||||||    
T  5591905 caaataagtc 5591896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 374 - 455
Target Start/End: Complemental strand, 23373323 - 23373242
Alignment:
Q  374 tggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||||||||||| |||| |||||||||| |||||| ||| | | |||||||| |||||||| ||| |||||||||||    
T  23373323 tggacatgtcataagttgtttctataagctctcccaaacaatctcacaagtgcttatatcagtagacaagttcaaataagtc 23373242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 361 - 453
Target Start/End: Original strand, 15581301 - 15581393
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||| || |||| ||||||||||||||| ||||||| ||||||  |||||| ||| | | |||||||| |||||||||||||| |||||||    
T  15581301 tgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataag 15581393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 370 - 453
Target Start/End: Complemental strand, 4549555 - 4549472
Alignment:
Q  370 tttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||| ||||||||||||||| |||| |||||||||| |||||||||| | |  |||||||  |||||||||| ||||||||||    
T  4549555 tttatagacatgtcataagttgtttctataagctctcccaaacagtctcagaaatgcttatgccagtagataatctcaaataag 4549472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 373 - 416
Target Start/End: Complemental strand, 38867842 - 38867799
Alignment:
Q  373 atggacatgtcataagttatttccataagctctctcaaacagtc 416  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  38867842 atggacatatcataagttatttccataagctctctcaaacagtc 38867799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 44422756 - 44422830
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagct 445  Q
    |||||||||||||||||| ||||| ||||||||||| || ||||||| | | ||| ||||| |||||||||||||    
T  44422756 ttatggacatgtcataagctattttcataagctctcccagacagtctcaaaagtgtttatcccagtagataagct 44422830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 362 - 411
Target Start/End: Complemental strand, 11560584 - 11560535
Alignment:
Q  362 gaaaatagtttatggacatgtcataagttatttccataagctctctcaaa 411  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||||    
T  11560584 gaaaatagtttatggatatgtcataagttgtttccataagctctatcaaa 11560535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 347 - 455
Target Start/End: Complemental strand, 3597318 - 3597210
Alignment:
Q  347 ttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctc 446  Q
    |||||||||| |  ||||||||| |||||| |||||||||||||||||  || | ||||  |||||||||| | | ||| |||| ||| ||||||| |||    
T  3597318 ttatggaaataagctgaaaatagcttatggccatgtcataagttatttttatcaactcttccaaacagtctcacaagtggttatatcattagataacctc 3597219  T
Q  447 aaataagtc 455  Q
    |||||||||    
T  3597218 aaataagtc 3597210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 451
Target Start/End: Complemental strand, 32515454 - 32515374
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaata 451  Q
    |||| ||||||||||| | | ||||||||||||||| |||||||||| | | |||||||| | ||||||||| ||||||||    
T  32515454 ttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 372 - 455
Target Start/End: Complemental strand, 4034029 - 4033946
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| | | ||| ||||  ||||||| ||| |||||| ||||    
T  4034029 tatggacaagtcataagttattttcataagctctctcaaacaatctcacaagtgtttatgccagtagacaagttcaaatgagtc 4033946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Original strand, 15579539 - 15579586
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtctt 418  Q
    |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  15579539 ttatggacatgtcataagttgtttccacaagctctcccaaacagtctt 15579586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 396 - 455
Target Start/End: Original strand, 27807197 - 27807256
Alignment:
Q  396 cataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||||||| |  ||||||| |||||||| ||| |||||||||||    
T  27807197 cataagctctctcaaacagtcttacaaatgcttatgtcagtagaaaagttcaaataagtc 27807256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 453
Target Start/End: Complemental strand, 31517794 - 31517671
Alignment:
Q  330 aatctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgctta 429  Q
    ||||| ||||| || ||||||| |||| |  |||||| || ||||| ||||||||| |||| |||  ||||| |||| |||||||||| | | |||||||    
T  31517794 aatctgtcttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcatgagttgttttgataagttctcccaaacagtctcacaagtgctta 31517695  T
Q  430 tctcagtagataagctcaaataag 453  Q
    |  ||||| |||||||||||||||    
T  31517694 tgccagtaaataagctcaaataag 31517671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 12564550 - 12564428
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    |||||||| ||  ||||||||||| |  |||||| |  |||| ||| ||||||||| ||| | | ||||||||| |||||||||  | | |||||||| |    
T  12564550 ctatcttggagaacttatggaaataagctgaaaacaacttattgacttgtcataagctatatacgtaagctctcccaaacagtcacacaagtgcttatat 12564451  T
Q  433 cagtagataagctcaaataagtc 455  Q
    ||||| |||||||||||||||||    
T  12564450 cagtatataagctcaaataagtc 12564428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 377 - 455
Target Start/End: Original strand, 28467496 - 28467574
Alignment:
Q  377 acatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||||||||| ||||| |||| ||||| ||| ||||| ||   |||| |||| ||||||||||||    
T  28467496 acatgtcataagttatttccataatctctcccaaatagtctcataagtgctaatgctagtaaataaactcaaataagtc 28467574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 371 - 453
Target Start/End: Original strand, 43420315 - 43420397
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    ||||| |||||||||||| | |||||||||| |||| ||| |||||| | | ||| |||| || |||||||||||||||||||    
T  43420315 ttatgaacatgtcataagctgtttccataagatctcacaagcagtctcacaagtgtttatgtctgtagataagctcaaataag 43420397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 452
Target Start/End: Complemental strand, 14737747 - 14737658
Alignment:
Q  363 aaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    ||||||| |||||||||||| ||||||||||| || ||| | || |||||||||| | | ||||||||   |||| ||||||||||||||    
T  14737747 aaaatagcttatggacatgttataagttattttcacaagttttcccaaacagtctcacaagtgcttattctagtaaataagctcaaataa 14737658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 17631120 - 17631079
Alignment:
Q  366 atagtttatggacatgtcataagttatttccataagctctct 407  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  17631120 atagcttatggacatgtcataagttgtttccataagctctct 17631079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 23407489 - 23407534
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    ||||||||||||||||| |||||| ||||||||||||| |||||||    
T  23407489 tatggacatgtcataagctatttcaataagctctctcagacagtct 23407534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 26679419 - 26679492
Alignment:
Q  379 atgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataa 452  Q
    |||||||||| | ||||||||||||||| ||||| ||||||   ||||| ||  ||||||||||||||||||||    
T  26679419 atgtcataagatttttccataagctctcgcaaactgtcttaccagtgctaatgacagtagataagctcaaataa 26679492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 342 - 455
Target Start/End: Original strand, 29723517 - 29723630
Alignment:
Q  342 agtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagata 441  Q
    |||| ||||| |||| | ||||||| ||||||||||||||||||||| | ||||||| || ||| |||||| || | | | ||||||||   |||| |||    
T  29723517 agtggttatgtaaataagttgaaaacagtttatggacatgtcataagctgtttccattagttctttcaaactgtatcacaagtgcttatgctagtaaata 29723616  T
Q  442 agctcaaataagtc 455  Q
    ||||||||| ||||    
T  29723617 agctcaaattagtc 29723630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 439
Target Start/End: Complemental strand, 44032049 - 44031944
Alignment:
Q  334 tatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctc 433  Q
    |||||||||| |||||||||||| |  ||||||||| ||||||||||||||| || |  || |||||||||||  | ||||||| | | ||||||||  |    
T  44032049 tatcttgaagagcttatggaaattagctgaaaatagcttatggacatgtcattagctgcttacataagctctcctagacagtctaacaagtgcttatgac 44031950  T
Q  434 agtaga 439  Q
    ||||||    
T  44031949 agtaga 44031944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 454
Target Start/End: Original strand, 45327627 - 45327720
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||||| | ||||||||||||||||||||| ||||||||||||| | |||  ||||| | | |||||  |  |||||||||||||| |||||||    
T  45327627 tgaaaacaatttatggacatgtcataagttgtttccataagctcccccaactagtctcacaagtgctcgtgccagtagataagctccaataagt 45327720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 49692064 - 49692019
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaacagtct 417  Q
    ||||||||||||||||| ||||| |||||| |||||||||||||||    
T  49692064 tatggacatgtcataagctattttcataagttctctcaaacagtct 49692019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Complemental strand, 10199421 - 10199337
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||| |||||||||||| ||||| ||| || |||| |||| ||| | | | |||||||| | ||||||||||||||||||||||    
T  10199421 ttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataagctcaaataagtc 10199337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 361 - 454
Target Start/End: Original strand, 17628646 - 17628735
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagt 454  Q
    |||||| || |||||||||||||||||||| ||||||||||    ||| |||||||| | | |||||| | ||||||| ||||||| |||||||    
T  17628646 tgaaaacagcttatggacatgtcataagttgtttccataag----ctccaacagtctcacaagtgcttgtgtcagtaggtaagctccaataagt 17628735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 371 - 455
Target Start/End: Original strand, 27140535 - 27140619
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||||||||||| | ||||| ||| |||||||||| || |||| |  || |||| ||| |||||||||||| |||||||    
T  27140535 ttatggacatgtcataagctgtttccttaaactctctcaaagagacttacaattgtttatgtcaatagataagctcatataagtc 27140619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 379 - 455
Target Start/End: Complemental strand, 51929467 - 51929391
Alignment:
Q  379 atgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||||| | ||| |||||| ||||| ||||||| | | | |||||||| |||||||||||||||||| |||||    
T  51929467 atgtcataagctgttttcataagttctcttaaacagtgtcacaggtgcttatgtcagtagataagctcaaaaaagtc 51929391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 452
Target Start/End: Original strand, 4868431 - 4868537
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagc 444  Q
    ||||||| |||| | ||||||| |  |||| ||||||||||||||| |||| |||| |||||||||||||||| | | |||| ||| ||| |||||||      
T  4868431 gcttatgtaaataagttgaaaacaacttattgacatgtcataagttgtttc-ataaactctctcaaacagtctcacaagtgcctatgtcaatagataaat 4868529  T
Q  445 tcaaataa 452  Q
    ||||||||    
T  4868530 tcaaataa 4868537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 455
Target Start/End: Original strand, 6279477 - 6279540
Alignment:
Q  392 tttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||||||||||||||||| |  | | |||||||| ||||||| |||||| |||||||||    
T  6279477 tttccataagctctctcaaacagccacacaagtgcttatgtcagtagttaagctgaaataagtc 6279540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 408
Target Start/End: Original strand, 15515572 - 15515635
Alignment:
Q  345 gcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctc 408  Q
    |||||||||||| | ||||||||||  ||| ||||||||||||||| ||| ||||| |||||||    
T  15515572 gcttatggaaataaattgaaaatagcgtattgacatgtcataagttgttttcataaactctctc 15515635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 368 - 455
Target Start/End: Original strand, 16980857 - 16980944
Alignment:
Q  368 agtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    |||||||| | ||||| |||||| |||||||||||||||||||| ||||| | | || ||||| |  ||| ||||| |||||||||||    
T  16980857 agtttatgaaaatgtcgtaagttgtttccataagctctctcaaatagtctcacaagtacttatgttggtatataagttcaaataagtc 16980944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 426 - 465
Target Start/End: Complemental strand, 33204352 - 33204313
Alignment:
Q  426 cttatctcagtagataagctcaaataagtcggtctaaaca 465  Q
    ||||| ||||||||||||||||||||||||| ||||||||    
T  33204352 cttatgtcagtagataagctcaaataagtcgatctaaaca 33204313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 372 - 455
Target Start/End: Original strand, 34536216 - 34536299
Alignment:
Q  372 tatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||||||||||| | ||| |||||||  ||||||||||||| | | ||| |||| ||| |||||| | |||||||||||    
T  34536216 tatggacatgtcataagctgttttcataagccatctcaaacagtctcacaagtgtttatgtcaatagatacgttcaaataagtc 34536299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 414
Target Start/End: Complemental strand, 37941998 - 37941955
Alignment:
Q  371 ttatggacatgtcataagttatttccataagctctctcaaacag 414  Q
    ||||||||||||||||| || |||| ||||||||||||||||||    
T  37941998 ttatggacatgtcataaattgtttctataagctctctcaaacag 37941955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 303
Target Start/End: Original strand, 45234148 - 45234187
Alignment:
Q  264 tatttctataataaaacataaaataaagtcaagttatttt 303  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  45234148 tatttctataataaaagataaaataaagtcaaattatttt 45234187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 413
Target Start/End: Complemental strand, 49521819 - 49521776
Alignment:
Q  370 tttatggacatgtcataagttatttccataagctctctcaaaca 413  Q
    |||||| |||||||||||||| |||||| |||||||||||||||    
T  49521819 tttatgaacatgtcataagttgtttccacaagctctctcaaaca 49521776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 333 - 455
Target Start/End: Complemental strand, 37593735 - 37593613
Alignment:
Q  333 ctatcttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatct 432  Q
    |||| |||||| ||||||| |||| |  |||||| || ||||| |||||||||||||| | | ||| || | || |||||||||| | | ||| ||||      
T  37593735 ctattttgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagttgtgttcattagttttcccaaacagtctaacaagtgtttatgc 37593636  T
Q  433 cagtagataagctcaaataagtc 455  Q
    ||||| |||||||||||||||||    
T  37593635 cagtatataagctcaaataagtc 37593613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 349 - 415
Target Start/End: Original strand, 37811887 - 37811953
Alignment:
Q  349 atggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagt 415  Q
    |||||||| | ||||||| |||||||| |||||||||||| | ||| |||||| |||||||| ||||    
T  37811887 atggaaataagttgaaaacagtttatgaacatgtcataagctgttttcataagttctctcaaccagt 37811953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 5157140 - 5157213
Alignment:
Q  382 tcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataagtc 455  Q
    ||||||||| |||| |||||||||| |||||||| | | | ||| |||| || ||||||||| |||||||||||    
T  5157140 tcataagttgtttctataagctctcccaaacagtttcacaagtgtttatgtccgtagataagttcaaataagtc 5157213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 423 - 468
Target Start/End: Original strand, 6292601 - 6292646
Alignment:
Q  423 gtgcttatctcagtagataagctcaaataagtcggtctaaacaaac 468  Q
    |||||||| ||||||||||||||||||||||||  || ||||||||    
T  6292601 gtgcttatgtcagtagataagctcaaataagtcaatccaaacaaac 6292646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 361 - 406
Target Start/End: Original strand, 27145589 - 27145634
Alignment:
Q  361 tgaaaatagtttatggacatgtcataagttatttccataagctctc 406  Q
    ||||||||  |||||||||||||||||| | |||||||||||||||    
T  27145589 tgaaaataacttatggacatgtcataagctttttccataagctctc 27145634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 303
Target Start/End: Original strand, 50319241 - 50319282
Alignment:
Q  262 gctatttctataataaaacataaaataaagtcaagttatttt 303  Q
    ||||||||||||| |||| |||||||||||||||||| ||||    
T  50319241 gctatttctataacaaaagataaaataaagtcaagttgtttt 50319282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 378 - 449
Target Start/End: Original strand, 27640 - 27711
Alignment:
Q  378 catgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaa 449  Q
    ||||||||||| ||||||||||||||||| |||||||||| | | || | ||| ||||||||| ||||||||    
T  27640 catgtcataagctatttccataagctctcccaaacagtctcagaagtacatatgtcagtagatcagctcaaa 27711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 383 - 453
Target Start/End: Complemental strand, 4224 - 4154
Alignment:
Q  383 cataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagtagataagctcaaataag 453  Q
    |||||||| ||||||||| ||||| ||||||  || | | |||||||| |||||||| |||||||||||||    
T  4224 cataagttgtttccataaactctcacaaacaagctcacaagtgcttatgtcagtagacaagctcaaataag 4154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 337 - 442
Target Start/End: Complemental strand, 10664 - 10559
Alignment:
Q  337 cttgaagtgcttatggaaatcatttgaaaatagtttatggacatgtcataagttatttccataagctctctcaaacagtcttatatgtgcttatctcagt 436  Q
    |||| |||| |||||||||| |  |||||| |  ||||||||||||||| |||| ||| |||||||| | ||||||||||| | | || ||||| |||||    
T  10664 cttgtagtgtttatggaaataagctgaaaacaacttatggacatgtcattagttgtttacataagctttgtcaaacagtctcacaagtacttatgtcagt 10565  T
Q  437 agataa 442  Q
    | ||||    
T  10564 acataa 10559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 371 - 400
Target Start/End: Original strand, 38649 - 38678
Alignment:
Q  371 ttatggacatgtcataagttatttccataa 400  Q
    ||||||||||||||||||||||||||||||    
T  38649 ttatggacatgtcataagttatttccataa 38678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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