View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12191_low_4 (Length: 474)
Name: NF12191_low_4
Description: NF12191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12191_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 406; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 33140586 - 33141027
Alignment:
| Q |
19 |
gtactttcatgttatctttggacactgaagaaggaggaaaagtctgtcatcatttatggaggtaaagataaggaatggattcaacagttcactaagtatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33140586 |
gtactttcatgttatctttggacactgaagaaggaggaaaagtctgtcatcatttatggaggtaaagataaggaatggattcaacagttcactaagtatg |
33140685 |
T |
|
| Q |
119 |
ctggtgctctagcaaatgatgccgctattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33140686 |
ctggtgctctagcaaatgatgccgctattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttctg |
33140785 |
T |
|
| Q |
219 |
gaaaaaggtagaaagtttgtttgtgaccaagatgcatgagaaaacaaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacagga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||| || |
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| T |
33140786 |
gaaaaaggtagaaagtttgtttgtgaccaagatgcatgagaaaacaaacactgtaacacaacaggttgagaaattgctttcttacaagaatgagactggg |
33140885 |
T |
|
| Q |
319 |
tgggcaattgtaaccaaagggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaa |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33140886 |
tgggcaattgtaaccaaagggtctattgtgacttctgttggtcatgggacttcagttttgaagacagtgtccgagtttgacaaatggaaagatgtggcga |
33140985 |
T |
|
| Q |
419 |
tcaataaaggctttgaattcgcatttagagaacatcatcaca |
460 |
Q |
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| T |
33140986 |
tcaataaaggctttgaattcgcatttagagaacatcatcaca |
33141027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 63 - 409
Target Start/End: Original strand, 33159250 - 33159596
Alignment:
| Q |
63 |
tgtcatcatttatggaggtaaagataaggaatggattcaacagttcactaagtatgctggtgctctagcaaatgatgccgctattaagcagacgaagact |
162 |
Q |
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||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||| || | |||||||||| ||||||||||||| || ||| |
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| T |
33159250 |
tgtcatcatttgtggaggtaaagataaggaatggattcaacaattcacaaagtattttggtgccctggtaaatgatgccactattaagcagacaaacact |
33159349 |
T |
|
| Q |
163 |
tcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttttggaaaaaggtagaaagtttgtttgtgaccaagatgcatgagaaaa |
262 |
Q |
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|| ||||| || ||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33159350 |
tccattgagttgatttgcttggagtctcaacaacaaaatgtggttaacaccttttggaaaaaggtagagagtttgtttgtgaccaagatgcatgagaaaa |
33159449 |
T |
|
| Q |
263 |
caaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacaggatgggcaattgtaaccaaagggtctattgtgacttctgttggtca |
362 |
Q |
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||||| |||||||||| |||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
33159450 |
caaactctgttacacaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaaccaaaggttctattgtgattgctgttggtca |
33159549 |
T |
|
| Q |
363 |
tgggactacagctttgaagacagtgtccgagtttgacaaatggaaag |
409 |
Q |
| |
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||||||||||| |||||||||| | | ||||||| || |||||||| |
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| T |
33159550 |
tgggactacagttttgaagacatttgcagagtttggcacatggaaag |
33159596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 63 - 409
Target Start/End: Original strand, 33182094 - 33182440
Alignment:
| Q |
63 |
tgtcatcatttatggaggtaaagataaggaatggattcaacagttcactaagtatgctggtgctctagcaaatgatgccgctattaagcagacgaagact |
162 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |||||| || | |||||||||| ||||||||||||| || ||| |
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| T |
33182094 |
tgtcatcatttgtggaggtaaagataaggaatggattcaacaattcacaaagtattttggtgccctggtaaatgatgccactattaagcagacaaacact |
33182193 |
T |
|
| Q |
163 |
tcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttttggaaaaaggtagaaagtttgtttgtgaccaagatgcatgagaaaa |
262 |
Q |
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|| ||||| || ||||||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33182194 |
tccattgagttgatttgcttggagtctcaacaacaaaatgtggttaacaccttttggaaaaaggtagagagtttgtttgtgaccaagatgcatgagaaaa |
33182293 |
T |
|
| Q |
263 |
caaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacaggatgggcaattgtaaccaaagggtctattgtgacttctgttggtca |
362 |
Q |
| |
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||||| |||||||||| |||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||||| |||||||||| | |||||||||| |
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| T |
33182294 |
caaactctgttacacaacaggttgagaaattgctttcttacaaaaatgagtcagggtgggcaattgtaaccaaaggttctattgtgattgctgttggtca |
33182393 |
T |
|
| Q |
363 |
tgggactacagctttgaagacagtgtccgagtttgacaaatggaaag |
409 |
Q |
| |
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||||||||||| |||||||||| | | ||||||| || |||||||| |
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| T |
33182394 |
tgggactacagttttgaagacatttgcagagtttggcacatggaaag |
33182440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 44 - 456
Target Start/End: Complemental strand, 33287501 - 33287083
Alignment:
| Q |
44 |
tgaagaaggaggaaaagtctgtcatcatttatggaggtaaagataaggaatggattcaacagttcactaagtatgctggtgctctagcaaatgatgccgc |
143 |
Q |
| |
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||||| ||||||| |||| ||| ||||||||||||||||||||||||| |||||| ||| | ||||| |||| |||| ||| |||||||||||| | |
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| T |
33287501 |
tgaaggaggaggagaagtttgttatcatttatggaggtaaagataaggcatggatccaagaattcaccaagtttgctactgccctagcaaatgatacaaa |
33287402 |
T |
|
| Q |
144 |
tattaagcagacgaagacttcaattgacctgttttgcttggagtctcaacagccaaatgtggttaacaacttttggaaaaaggtagaaagtttgtttgtg |
243 |
Q |
| |
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|||||||||| | |||||||||||||| |||| |||||||||||||| ||||||||||||||||||| ||||||| |||||| || ||||||||| | |
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| T |
33287401 |
tattaagcaggcaaagacttcaattgagttgttaagcttggagtctcaaaagccaaatgtggttaacaaattttggacaaaggtggagagtttgtttctc |
33287302 |
T |
|
| Q |
244 |
accaagatgcatgagaa------aacaaacactgttacacagcaggttgagaaattgctttcatacaagaatgagacaggatgggcaattgtaaccaaag |
337 |
Q |
| |
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||||||||| || | || |||| ||| ||| | ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
33287301 |
accaagatgaataataatgatacaacagacagtgtaaaacaacaggttgagaaattgctttcgtacaagaatgagacagggtgggcaattgtaaccaaag |
33287202 |
T |
|
| Q |
338 |
ggtctattgtgacttctgttggtcatgggactacagctttgaagacagtgtccgagtttgacaaatggaaagatgtggcaatcaataaaggctttgaatt |
437 |
Q |
| |
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| |||||||||| | ||||||| ||||| ||||||| | ||| ||||||||||||||||||||||||||||| |||||||| || || ||||||||| |
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| T |
33287201 |
gttctattgtgattgctgttggccatggtactacagtgtcgaaaacagtgtccgagtttgacaaatggaaagaagtggcaattaaaaagggctttgaaca |
33287102 |
T |
|
| Q |
438 |
cgcatttagagaacatcat |
456 |
Q |
| |
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||||||| ||||||||| |
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|
| T |
33287101 |
tgcatttaatgaacatcat |
33287083 |
T |
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