View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12191_low_5 (Length: 451)
Name: NF12191_low_5
Description: NF12191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12191_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 378; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 7218270 - 7218672
Alignment:
| Q |
1 |
tcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218270 |
tcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaa |
7218369 |
T |
|
| Q |
101 |
aaattcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
7218370 |
aaattcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagcatggcttctgatgccttcaacatgttggaa |
7218469 |
T |
|
| Q |
201 |
agaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctg |
300 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7218470 |
agaaaggactgtttcgatgtaatgttgattgatcctcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctg |
7218569 |
T |
|
| Q |
301 |
tcattagtaagaatttattcaactttacacaattcacatgattcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
7218570 |
tcattagtaagaatttattcaactttacacaattcacatgattcattc--atatatgtacttaataagtgtgaacttacattattatttcttttttgtag |
7218667 |
T |
|
| Q |
401 |
tgatg |
405 |
Q |
| |
|
||||| |
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|
| T |
7218668 |
tgatg |
7218672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 144 - 391
Target Start/End: Complemental strand, 7317650 - 7317403
Alignment:
| Q |
144 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
243 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||| || | ||||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
7317650 |
ttgtttatttcagttaccaaatgcaatacagcttctgatgccttgaattcgatggaaagaaaggactgttttgatgtaatgttgattgatgctcatatgc |
7317551 |
T |
|
| Q |
244 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacacaattcacatgatt |
343 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7317550 |
caaacatggatgtttatgactttgtccaacatgttaccctactactcaaaattcctgtcattagtaagaatttcttcaactttacacaattcacatgatt |
7317451 |
T |
|
| Q |
344 |
cattcatatatatgtacctcataagtgtgaacttacattattatttct |
391 |
Q |
| |
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||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
7317450 |
cattcatatatatgtacttaataagtgtgaacttacattattatttct |
7317403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 147 - 330
Target Start/End: Original strand, 7243922 - 7244105
Alignment:
| Q |
147 |
tttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgccaa |
246 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
7243922 |
tttatttcagttaccaaatgtaacacagcttctgatgccttgaacttgttggaaagaaaggactgtttcgatgtaatgttgattgatcctcatatgccaa |
7244021 |
T |
|
| Q |
247 |
acatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7244022 |
acatggatgcttatgactttgtccaacatgttaccctacaactcaacattcctgtcattagtaagaatttattcaactttacac |
7244105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 8161984 - 8162314
Alignment:
| Q |
1 |
tcactctcctgaattccatcgaggagatgtgtaatcgatgcaattataagggttagttactgaatcacaccttattcaatgttttcatcttttttggtaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |||||||| || || | ||||||||||||||| |
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|
| T |
8161984 |
tcactctccttaattccatcgaggagatgtgtaatcgatgcaattatcaaggttaggtactgaatcataccttatttaaagtatccatcttttttggtaa |
8162083 |
T |
|
| Q |
101 |
aaat-tcttacttttatatgttttcatgtttctttattctgatattgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttgga |
199 |
Q |
| |
|
|||| ||||||||| || ||||||||||||| ||||| | |||||||| | |||||||||||||| | ||||||||||||| || | ||||||| |
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|
| T |
8162084 |
aaatatcttactttaatttgttttcatgtttgtttatctttttattgtttggattagttaccaaatgtaatgtggcttctgatgcattggatttgttgga |
8162183 |
T |
|
| Q |
200 |
-aagaaaggactgtttcgatgtaatgttgattgatactcatatgccaaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcc |
298 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||| ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||| | ||||| |
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| T |
8162184 |
caaaaaagtgctgtttcgatgtaatgttgattgatgctcgtatgccaaacatggatgcctgtgactttgtccaacatgtttccctacaacttcagattcc |
8162283 |
T |
|
| Q |
299 |
tgtcattagtaagaatttattcaactttaca |
329 |
Q |
| |
|
|| || |||||||||||||| ||||||||| |
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|
| T |
8162284 |
tgctatcagtaagaatttatttaactttaca |
8162314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 7324439 - 7324256
Alignment:
| Q |
144 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
243 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||| || || ||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
7324439 |
ttgtttatttcagttaccaaatgcaattcagcttctgatgctttgtacttgttggaaagaaaggactgttatgatgtaatgttgattgatgctcatatgc |
7324340 |
T |
|
| Q |
244 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
327 |
Q |
| |
|
| |||||||||| |||||||||||||||| || | ||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
7324339 |
cgaacatggatgtctatgactttgtccaaaatgctaccctacaactcaacattcctgttattagtaagaatttcttcaacttta |
7324256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 7244127 - 7244202
Alignment:
| Q |
333 |
ttcacatgattcattcatatatat---gtacctcataagtgtgaacttacattattatttcttttttgtagtgatg |
405 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
7244127 |
ttcatatgattcattcatatatatattgttactcagaagtgtggactgacattattatttcttttttgtagtgatg |
7244202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 405
Target Start/End: Complemental strand, 7324222 - 7324160
Alignment:
| Q |
343 |
tcattcatatatatgtacctcataagtgtgaacttacattattatttcttttttgtagtgatg |
405 |
Q |
| |
|
|||||||||| ||||||| | | ||| ||||||| ||||||||||||||| ||| |||||||| |
|
|
| T |
7324222 |
tcattcatatttatgtacttaagaagcgtgaactgacattattatttcttatttttagtgatg |
7324160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 369 - 405
Target Start/End: Original strand, 8162379 - 8162415
Alignment:
| Q |
369 |
tgtgaacttacattattatttcttttttgtagtgatg |
405 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
8162379 |
tgtgaactcacattattatttgttttttgtagtgatg |
8162415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 144 - 327
Target Start/End: Complemental strand, 22766478 - 22766295
Alignment:
| Q |
144 |
ttgtttatttcagttaccaaatgtagtatggcttctgatgccttcaacatgttggaaagaaaggactgtttcgatgtaatgttgattgatactcatatgc |
243 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||| ||||| ||| |||||||||||||||||||||| ||||||||||| |||||| ||||||||| |
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|
| T |
22766478 |
ttgtttatttcagttaccaaatgcaatacagcttctgaagccttgaacttgttggaaagaaaggactgttttgatgtaatgttaattgatgctcatatgc |
22766379 |
T |
|
| Q |
244 |
caaacatggatgcttatgactttgtccaaagtgttgtcctacaactcaacattcctgtcattagtaagaatttattcaacttta |
327 |
Q |
| |
|
||||||||||||| ||||| ||||| ||| || | | |||||||| |||||||| ||||||||| |||| |||||||||| |
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|
| T |
22766378 |
caaacatggatgcctatgattttgttcaacatgctaccggtcaactcaatattcctgttattagtaagtatttcttcaacttta |
22766295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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