View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12191_low_7 (Length: 286)

Name: NF12191_low_7
Description: NF12191
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12191_low_7
NF12191_low_7
[»] chr7 (13 HSPs)
chr7 (1-284)||(12591342-12591626)
chr7 (8-285)||(14320276-14320554)
chr7 (1-41)||(13006749-13006789)
chr7 (1-52)||(16090452-16090503)
chr7 (1-39)||(13743027-13743065)
chr7 (204-285)||(20907266-20907349)
chr7 (227-285)||(31154554-31154611)
chr7 (1-41)||(12710543-12710583)
chr7 (1-41)||(13123614-13123654)
chr7 (214-284)||(11220033-11220101)
chr7 (228-286)||(13742689-13742746)
chr7 (228-285)||(6412007-6412064)
chr7 (7-114)||(20907071-20907179)
[»] chr2 (12 HSPs)
chr2 (1-284)||(5706722-5707005)
chr2 (8-285)||(26884340-26884617)
chr2 (8-285)||(27208355-27208633)
chr2 (8-285)||(27210690-27210968)
chr2 (214-284)||(20724221-20724289)
chr2 (1-52)||(29281363-29281414)
chr2 (228-286)||(26582859-26582916)
chr2 (228-285)||(22810068-22810125)
chr2 (214-285)||(24943564-24943634)
chr2 (1-110)||(25181538-25181648)
chr2 (1-48)||(26583158-26583205)
chr2 (228-285)||(23089965-23090022)
[»] chr1 (5 HSPs)
chr1 (8-286)||(20045596-20045872)
chr1 (8-285)||(19961322-19961600)
chr1 (1-41)||(41111257-41111297)
chr1 (228-285)||(29554377-29554435)
chr1 (238-285)||(19664074-19664121)
[»] chr6 (24 HSPs)
chr6 (1-284)||(34640687-34640969)
chr6 (1-284)||(34647361-34647643)
chr6 (1-284)||(25470402-25470682)
chr6 (8-286)||(11289316-11289595)
chr6 (8-283)||(19300381-19300657)
chr6 (204-285)||(31251557-31251637)
chr6 (204-284)||(9099910-9099991)
chr6 (204-284)||(29097000-29097081)
chr6 (1-41)||(12167680-12167720)
chr6 (1-41)||(19286589-19286629)
chr6 (1-41)||(19786567-19786607)
chr6 (1-41)||(19877773-19877813)
chr6 (214-284)||(14375231-14375299)
chr6 (228-285)||(14724552-14724610)
chr6 (227-285)||(15457651-15457708)
chr6 (227-285)||(15464246-15464303)
chr6 (1-39)||(29614846-29614884)
chr6 (214-285)||(14616191-14616261)
chr6 (227-284)||(19588514-19588571)
chr6 (249-286)||(29615155-29615192)
chr6 (1-37)||(18799832-18799868)
chr6 (1-41)||(19883549-19883589)
chr6 (247-286)||(19786825-19786864)
chr6 (8-114)||(31251725-31251832)
[»] chr4 (10 HSPs)
chr4 (5-286)||(11847237-11847518)
chr4 (4-165)||(53482895-53483056)
chr4 (155-285)||(27905398-27905527)
chr4 (1-48)||(8046531-8046578)
chr4 (214-284)||(15325062-15325130)
chr4 (228-285)||(1650990-1651047)
chr4 (228-285)||(15407097-15407154)
chr4 (1-52)||(16147468-16147519)
chr4 (214-285)||(14485697-14485767)
chr4 (251-286)||(8046855-8046890)
[»] scaffold0261 (1 HSPs)
scaffold0261 (8-285)||(24214-24492)
[»] scaffold0453 (1 HSPs)
scaffold0453 (8-255)||(11196-11440)
[»] chr5 (6 HSPs)
chr5 (8-285)||(34829216-34829494)
chr5 (204-285)||(20772105-20772187)
chr5 (204-285)||(20780880-20780962)
chr5 (204-284)||(24930767-24930848)
chr5 (214-285)||(6728179-6728249)
chr5 (1-41)||(23527947-23527987)
[»] scaffold0483 (1 HSPs)
scaffold0483 (96-285)||(11744-11932)
[»] scaffold0001 (1 HSPs)
scaffold0001 (8-285)||(493672-493948)
[»] scaffold0034 (1 HSPs)
scaffold0034 (96-285)||(72416-72603)
[»] chr3 (6 HSPs)
chr3 (1-48)||(41455798-41455845)
chr3 (204-284)||(19235907-19235988)
chr3 (204-255)||(12034254-12034303)
chr3 (1-37)||(24192274-24192310)
chr3 (238-285)||(18900193-18900240)
chr3 (8-52)||(14865211-14865255)
[»] scaffold0720 (1 HSPs)
scaffold0720 (8-285)||(3904-4182)
[»] scaffold0706 (1 HSPs)
scaffold0706 (214-285)||(3248-3318)
[»] scaffold0206 (1 HSPs)
scaffold0206 (8-285)||(17819-18099)
[»] scaffold0634 (2 HSPs)
scaffold0634 (1-48)||(3044-3091)
scaffold0634 (228-286)||(2750-2807)
[»] chr8 (7 HSPs)
chr8 (1-48)||(23865923-23865970)
chr8 (228-285)||(10607120-10607178)
chr8 (228-281)||(20973956-20974009)
chr8 (228-285)||(22175993-22176050)
chr8 (214-284)||(41009380-41009448)
chr8 (7-41)||(17053928-17053962)
chr8 (228-285)||(22063521-22063578)
[»] scaffold0348 (1 HSPs)
scaffold0348 (204-285)||(8492-8575)
[»] scaffold0023 (3 HSPs)
scaffold0023 (228-285)||(153275-153332)
scaffold0023 (228-285)||(20452-20509)
scaffold0023 (7-114)||(134774-134882)
[»] scaffold0456 (2 HSPs)
scaffold0456 (7-47)||(367-407)
scaffold0456 (7-47)||(7512-7552)
[»] scaffold0097 (1 HSPs)
scaffold0097 (214-284)||(28050-28118)
[»] scaffold0085 (1 HSPs)
scaffold0085 (204-255)||(4509-4559)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-52)||(80128-80179)
[»] scaffold0342 (1 HSPs)
scaffold0342 (228-285)||(16824-16882)
[»] scaffold0249 (1 HSPs)
scaffold0249 (227-285)||(14730-14787)
[»] scaffold0203 (1 HSPs)
scaffold0203 (228-285)||(17036-17094)
[»] scaffold0004 (2 HSPs)
scaffold0004 (228-285)||(326959-327017)
scaffold0004 (228-285)||(321250-321308)
[»] scaffold0664 (1 HSPs)
scaffold0664 (228-285)||(2318-2375)
[»] scaffold0301 (1 HSPs)
scaffold0301 (228-285)||(13348-13405)
[»] scaffold0120 (1 HSPs)
scaffold0120 (228-285)||(4994-5051)
[»] scaffold0026 (1 HSPs)
scaffold0026 (7-48)||(12534-12575)
[»] scaffold0025 (2 HSPs)
scaffold0025 (228-285)||(71275-71332)
scaffold0025 (1-37)||(15085-15121)
[»] scaffold1773 (2 HSPs)
scaffold1773 (1-41)||(496-536)
scaffold1773 (251-286)||(156-191)
[»] scaffold0323 (1 HSPs)
scaffold0323 (229-285)||(7435-7491)
[»] scaffold0117 (1 HSPs)
scaffold0117 (1-41)||(9275-9315)
[»] scaffold0126 (1 HSPs)
scaffold0126 (230-285)||(44379-44434)
[»] scaffold0029 (1 HSPs)
scaffold0029 (251-286)||(110942-110977)
[»] scaffold0574 (1 HSPs)
scaffold0574 (228-285)||(5835-5893)
[»] scaffold0154 (2 HSPs)
scaffold0154 (227-285)||(29932-29990)
scaffold0154 (8-71)||(30247-30311)
[»] scaffold0226 (1 HSPs)
scaffold0226 (228-285)||(5334-5391)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 12591342 - 12591626
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgttcgtgagctaggggaccccttttagtact-cttgtgtgtttccttag 99  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  12591342 ctagccgtcgcttaagcgaagtgaaccttagtcagcgtttttctgaaccttgttcgtgagctaggggactccttttagtacttcttgtgtgtttccttag 12591441  T
Q  100 cttgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaa 199  Q
    |||| |||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12591442 cttgaataactcttgtttaggtatctaatcctacttaaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaa 12591541  T
Q  200 ctaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12591542 ctaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 12591626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 14320276 - 14320554
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgttt-ccttagcttgta 105  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||| ||||||  |  ||||||   ||||||||||    
T  14320276 tcgcttaagcgaactgagccttagtcagcctttttctgaaccttgtttcctgcactaggggacccttttgagtacttctaagtgtttgttttagcttgta 14320375  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||||||||  |||| ||| ||||| || | |||||  ||| | ||| | |||||| |||| |||||| |||||||||||||| | |   || |    ||    
T  14320376 taactcttgtataggcatcaaatcctacttaaaacacgatg-ttaattgattggttaattt-tatgaa-ttttggagatgttgtagtacttggatcgagt 14320472  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||||| ||||||||||||| ||| ||||||||||||| || ||||||||   |  | || ||||||||||||||||||||||    
T  14320473 gaatgatcatgttgcattaa-aggggtggtgagtcataaaagtacatatgcatttgttgttgagttgtatgtagatatacaca 14320554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 13006789 - 13006749
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  13006789 ctagccgtcgcttaagcgaagtgaaccttaatcagcctttt 13006749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16090503 - 16090452
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg 52  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||||    
T  16090503 ctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaaccttg 16090452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 13743065 - 13743027
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctt 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  13743065 ctagccgtcgcttaagcgaagtgagccttagtcagcctt 13743027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Original strand, 20907266 - 20907349
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatag---tagagttgtatgtagatatacaca 285  Q
    ||||||||| |||||||||||| ||| |||||||||||||||| |||||||| | | |   | ||||||||||||||||||||||    
T  20907266 gtgaatgaatatgttgcattaaaagg-gtggtgagtcatataagtacatatgcatttgtcattgagttgtatgtagatatacaca 20907349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 31154611 - 31154554
Alignment:
Q  227 aggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||| ||||||||  || || ||||||||||||||||||||||    
T  31154611 aggagtggtgagtcatataagtacatatg-cattgtcgagttgtatgtagatatacaca 31154554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12710543 - 12710583
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  12710543 ctagccgtcgcttaagcgaagtgagtcttagtcagcctttt 12710583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13123614 - 13123654
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  13123614 ctagccgtcgcttaagcgaagtgagtcttagtcagcctttt 13123654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 11220033 - 11220101
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||  ||||||||||||| |||||||||| || | |  | |||||||||||||||||||||    
T  11220033 atgttgcattaag--gagtggtgagtcagataaatacatgtgcattgttggagttgtatgtagatatacac 11220101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 13742746 - 13742689
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacag 286  Q
    ||||| || |||||||| || |||||||||||||| ||||||||||| |||||||||||    
T  13742746 ggagtagtaagtcatatgaa-acatatgtaatagtcgagttgtatgttgatatacacag 13742689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 6412064 - 6412007
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||| ||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  6412064 ggagtggtaagtcatatacatatatatgcattggttgagttgtatgtagatatacaca 6412007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 20907071 - 20907179
Alignment:
Q  7 gtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgt 104  Q
    |||||||||||||| ||| | |||||||||| || |||||| |||| ||||||  ||||||||||| ||| ||||||  |  ||||||| ||||||||||    
T  20907071 gtcgcttaagcgaactgagcgttagtcagcc-ttatctgaatcttgcttcgtgcactaggggacccttttgagtacttctaggtgtttctcttagcttgt 20907169  T
Q  105 ataactcttg 114  Q
    ||||| ||||    
T  20907170 ataacccttg 20907179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 5706722 - 5707005
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgttcgtgagctaggggaccccttttagtact-cttgtgtgtttccttag 99  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||| |||||||||| ||||| ||| |||||||||||||    
T  5706722 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt-ctgaaccctgcttgtgagctaggagacccctttttgtacttcttatgtgtttccttag 5706820  T
Q  100 cttgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaa 199  Q
    ||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5706821 cttgtataactcttgtttaggtatctaatcctactttaaacataatgatgaatggtttggttgattcctatgaatttttggagatgttgaaatgtgtgaa 5706920  T
Q  200 ctaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  5706921 ctaggtgaatgaacatgttgcattaagagaagtgatgagtcatattaatatatatgtaatagtagagttgtatgtagatatacac 5707005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 26884617 - 26884340
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgta 105  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||| ||||||  ||||||||||| ||| |||| | ||   ||||||  ||||||||||    
T  26884617 tcgcttaagcgaactgagccttagtcagcctctttctgaaccttgcttcgtgcactaggggacccttttgagtatttttaaatgtttcttttagcttgta 26884518  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||||||||  |||| ||| ||||| || | ||||   ||| | ||| | |||||| |||| |||||||||| | |||||||||| |   ||||  | ||    
T  26884517 taactcttgtataggcatcaaatcctacttaaaac--gatg-ttaattgattggttaattt-tatgaattttggaagatgttgaagtacttgaatcaagt 26884422  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||| ||||||||||||||| ||| |||||||||||||||| ||||||||   |  | || ||||||||||||||||||||||    
T  26884421 gaataaacatgttgcattaa-aggggtggtgagtcatataagtacatatgcatttgttgttgagttgtatgtagatatacaca 26884340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 27208355 - 27208633
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgta 105  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||  ||||||||||| ||  ||||||  |  |||||||  ||||||||||    
T  27208355 tcgcttaagcgaactgagccttagtcagcctttttctgaaccttgtttcgtgcactaggggaccctttcgagtactgctaagtgtttcttttagcttgta 27208454  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||||||||  |||| ||| ||||| || | |||||  ||| | ||| | |||||| |||| |||||| |||||||||||||| | |   ||||    ||    
T  27208455 taactcttgtataggcatcaaatcctacttaaaacacgatg-ttaattgattggttaattt-tatgaa-ttttggagatgttgtagtacttgaatcgagt 27208551  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||||| ||||||| ||||| ||| ||||||||||||| || ||||||||   |  | || ||||||||||||||||||||||    
T  27208552 gaatgatcatgttgtattaa-aggggtggtgagtcataaaagtacatatgcatttgttgttgagttgtatgtagatatacaca 27208633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 27210690 - 27210968
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgta 105  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||  ||||||||||| ||  ||||||  |  |||||||  ||||||||||    
T  27210690 tcgcttaagcgaactgagccttagtcagcctttttctgaaccttgtttcgtgcactaggggaccctttcgagtactgctaagtgtttcttttagcttgta 27210789  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||||||||  |||| ||| ||||| || | |||||  ||| | ||| | |||||| |||| |||||| |||||||||||||| | |   ||||    ||    
T  27210790 taactcttgtataggcatcaaatcctacttaaaacacgatg-ttaattgattggttaattt-tatgaa-ttttggagatgttgtagtacttgaatcgagt 27210886  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||||| ||||||| ||||| ||| ||||||||||||| || ||||||||   |  | || ||||||||||||||||||||||    
T  27210887 gaatgatcatgttgtattaa-aggggtggtgagtcataaaagtacatatgcatttgttgttgagttgtatgtagatatacaca 27210968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 20724289 - 20724221
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||  |||||||||||||||| |||||||||| | |  | |||||||||||||||||||||    
T  20724289 atgttgcattaag--gagtggtgagtcatatgaatacatatgcattgttggagttgtatgtagatatacac 20724221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 29281414 - 29281363
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg 52  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||||    
T  29281414 ctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaaccttg 29281363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 26582916 - 26582859
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacag 286  Q
    ||||| || ||||||||||| ||||||||||||||  ||||||||||||||||||||||    
T  26582916 ggagtagtaagtcatataaa-acatatgtaatagttaagttgtatgtagatatacacag 26582859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 22810125 - 22810068
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  22810125 ggagtggtgagtcatatacatatatatgcattggttgagttgtatgtagatatacaca 22810068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 24943634 - 24943564
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgta-atagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||  ||||||||||||||||||||||||||| |  |  | ||||||||||||||||||||||    
T  24943634 atgttgcattaag--gagtggtgagtcatataaatacatatgcattttttggagttgtatgtagatatacaca 24943564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25181538 - 25181648
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-ctta 98  Q
    |||||||||||||||||||| |||   |||||||||| ||||||||| |||| ||||||  ||||||||||| ||| ||||||  |  ||||||| ||||    
T  25181538 ctagccgtcgcttaagcgaactgagtgttagtcagcc-ttttctgaatcttgcttcgtgcactaggggacccttttgagtacttctaggtgtttctctta 25181636  T
Q  99 gcttgtataact 110  Q
    |||||| |||||    
T  25181637 gcttgtgtaact 25181648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26583205 - 26583158
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaac 48  Q
    |||||||||||||||||||||| |  ||||||||||||| ||||||||    
T  26583205 ctagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaac 26583158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 23089965 - 23090022
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    ||||| |||||||||||| | | ||||| | |||| ||||||||||||||||||||||    
T  23089965 ggagttgtgagtcatatatacaaatatgcattagttgagttgtatgtagatatacaca 23090022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 20045596 - 20045872
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgttcgtgagctaggggaccccttttagtactc-ttgtgtgtttccttagcttgtat 106  Q
    ||||||||||||| ||| | |||| ||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||    
T  20045596 tcgcttaagcgaactgagctttagccagcctttt-ctgaaccttgttcgtgagctaggggaccccttttagtattccttatgtgtttccttagcttgtat 20045694  T
Q  107 aactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggtg 206  Q
    |||||||| ||||||||||||||| |  |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20045695 aactcttgtttaggtatctaatcctat-ttaaacataatgat-aatggtttgattgatttctatgaatttttggagatgttgaaatgtgtgaactaggtg 20045792  T
Q  207 aatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacag 286  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  20045793 aatgaacatgttgcatttagaggagtggtgagtcatataaatacatacgtaatagtatagttgtatgtagatatacacag 20045872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 19961600 - 19961322
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttcctt-agcttgta 105  Q
    ||||||||||||  ||| ||||||||||||| | ||||||| ||| ||||||  ||||||||||| ||| |||| | ||  ||||||| || ||||||||    
T  19961600 tcgcttaagcgagatgagccttagtcagcctctatctgaactttgcttcgtgcactaggggacccttttgagtatttttacgtgtttcttttagcttgta 19961501  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||| ||||  |||| ||| ||||| || ||||||| |||||| | || ||||||| |||| |||||||||| |||||||||||| |   ||||||| ||    
T  19961500 taacccttgtataggcatcaaatcctac-ttaaacacaatgataattgatttggttaatttttatgaatttt-ggagatgttgaagtacttgaactaagt 19961403  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtag-agttgtatgtagatatacaca 285  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||| | | || | |||||||||||||||||||||    
T  19961402 gaatgaacatgttgcattaaaaggggtggcgagtcatataaatacatatgcatttgttgaagttgtatgtagatatacaca 19961322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41111297 - 41111257
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  41111297 ctagccgtcgcttaagcgaagtgaaccttaatcagcctttt 41111257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 29554377 - 29554435
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||    
T  29554377 ggagtggtgagtcatataaatacatatgcatttgttggagttgtatgtagatatacaca 29554435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 19664074 - 19664121
Alignment:
Q  238 gtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||| ||||||||| | |||| ||||||||||||||||||||||    
T  19664074 gtcatatatatacatatgcattagttgagttgtatgtagatatacaca 19664121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 34640687 - 34640969
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgttcgtgagctaggggaccccttttagtact-cttgtgtgtttccttag 99  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||| |||||||||| ||||| ||| |||||||||||||    
T  34640687 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt-ctgaaccctgcttgtgagctaggagacccctttttgtacttcttatgtgtttccttag 34640785  T
Q  100 cttgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaa 199  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  34640786 cttgtataactcttgtttaggtatctaatcctactttaaacataatgatgaatggtttggttgatttctatgaatttttgggggtgttgaaatgtgtgaa 34640885  T
Q  200 ctaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    ||| |||||||||||||||||||| ||||| ||| |||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  34640886 ctaagtgaatgaacatgttgcattgagagg-gtgatgagtcatattaatatatatgtgatagtagagttgtatgtagatatacac 34640969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 34647361 - 34647643
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgttcgtgagctaggggaccccttttagtact-cttgtgtgtttccttag 99  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||| |||||||||| ||||| ||| |||||||||||||    
T  34647361 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt-ctgaaccctgcttgtgagctaggagacccctttttgtacttcttatgtgtttccttag 34647459  T
Q  100 cttgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaa 199  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  34647460 cttgtataactcttgtttaggtatctaatcctactttaaacataatgatgaatggtttggttgatttctatgaatttttgggggtgttgaaatgtgtgaa 34647559  T
Q  200 ctaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    ||| |||||||||||||||||||| ||||| ||| |||||||||| |||| |||||| |||||||||||||||||||||||||||    
T  34647560 ctaagtgaatgaacatgttgcattgagagg-gtgatgagtcatattaatatatatgtgatagtagagttgtatgtagatatacac 34647643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 25470402 - 25470682
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgttcgtgagctaggggaccccttttagtactc-ttgtgtgtttccttag 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||| || |||||||| | |||||    
T  25470402 ctagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaac-ttgctcgtaagctaggggacctcttttagtattccttgtgtgtcttcttag 25470500  T
Q  100 cttgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaa 199  Q
    |||||||||| |||| ||| || |||||||| |  | |||||||||||| |||| |||| | ||||| ||| || ||  ||||||||||||| |||||||    
T  25470501 cttgtataacccttg-ttaagtttctaatcctatgt-aaacataatgat-aatgatttgatcgatttatat-aacttgcggagatgttgaaaagtgtgaa 25470596  T
Q  200 ctaggtgaatgaacatgttgcattaagaggagtggtgagtcatat-aaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  25470597 ctagatgaatgaacatgttgcattaagaggagtggtgagtcatataaaatacatatgtattagtagagttgtatgtaggtatacac 25470682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 286
Target Start/End: Original strand, 11289316 - 11289595
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgt-tcgtgagctaggggaccccttttagtactcttgtgtgtttcctt-agcttgta 105  Q
    ||||||||||||  ||| |||||| |||||  ||||||||| |||  |||||  ||||||||||| ||| |||| | ||  |||||||||| ||||||||    
T  11289316 tcgcttaagcgagctgagccttagccagcccctttctgaactttgcctcgtgcactaggggacccttttaagtaattttaagtgtttcctttagcttgta 11289415  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttga-tttctatgaatttttggagatgttgaaatgtgtgaactagg 204  Q
    |||||| ||  ||||||| | || | || ||||||   ||||| | || ||||||||| |||||||||||||| |||||||||||| | |||||| || |    
T  11289416 taactcctgtataggtatttgattctac-ttaaaccccatgataattgatttggttgactttctatgaatttt-ggagatgttgaagtatgtgaattaag 11289513  T
Q  205 tgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacag 286  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11289514 tgaatgaacatgttgcattaaaaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacag 11289595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 19300381 - 19300657
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttcctt-agcttgta 105  Q
    ||||||||||||  ||| ||||||||||||| | ||||||| ||| ||||||  ||||||||||| ||| |||| | ||  ||||||| || ||||||||    
T  19300381 tcgcttaagcgagatgagccttagtcagcctctatctgaactttgcttcgtgcactaggggacccttttgagtatttttaagtgtttcttttagcttgta 19300480  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||| ||||  |||| ||| ||||| || ||||||| |||||| | || ||||||| |||| |||||||||| |||||||||||| |   ||||||| ||    
T  19300481 taacccttgtataggcatcaaatcctac-ttaaacacaatgataattgatttggttaatttttatgaatttt-ggagatgttgaagtacttgaactaagt 19300578  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtag-agttgtatgtagatataca 283  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||| | | || | |||||||||||||||||||    
T  19300579 gaatgaacatgttgcattaaaaggggtggcgagtcatataaatacatatgcatttgttgaagttgtatgtagatataca 19300657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 31251637 - 31251557
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||| ||| |||||||||||||||| |||||||| | | || ||||||||||||||||||||||    
T  31251637 gtgaatgaacatgttgcattaa-aggggtggtgagtcatataagtacatatgcatttgttgagttgtatgtagatatacaca 31251557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 9099910 - 9099991
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||||||||||  |||||||||||||||||| | ||||||||   || | || |||||||||||||||||||||    
T  9099910 gtgaatgaacatgttgcatta--aggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 9099991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 29097081 - 29097000
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||||||||||  |||||||||||||||||| | ||||||||   || | || |||||||||||||||||||||    
T  29097081 gtgaatgaacatgttgcatta--aggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 29097000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12167720 - 12167680
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  12167720 ctagccgtcgcttaagcgaagtgaaccttaatcagcctttt 12167680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19286629 - 19286589
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  19286629 ctagccgtcgcttaagcgaagtgaaccttaatcagcctttt 19286589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19786567 - 19786607
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  19786567 ctagccgtcgcttaagcgaagtgaaccttaatcagcctttt 19786607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19877813 - 19877773
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  19877813 ctagccgtcgcttaagcgaagtgaaccttaatcagcctttt 19877773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 14375231 - 14375299
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||  ||||||||||||||||||||||||||  | |  | |||||||||||||||||||||    
T  14375231 atgttgcattaag--gagtggtgagtcatataaatacatatacattgttggagttgtatgtagatatacac 14375299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 14724610 - 14724552
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||    
T  14724610 ggagtggtgagtcatataaatacatatgcatttgttggagttgtatgtagatatacaca 14724552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 15457708 - 15457651
Alignment:
Q  227 aggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||| ||||||||  || || ||||||||||||||||||||||    
T  15457708 aggagtggtgagtcatataagtacatatg-cattgttgagttgtatgtagatatacaca 15457651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 15464303 - 15464246
Alignment:
Q  227 aggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||| ||||||||  || || ||||||||||||||||||||||    
T  15464303 aggagtggtgagtcatataagtacatatg-cattgttgagttgtatgtagatatacaca 15464246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 29614846 - 29614884
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctt 39  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  29614846 ctagccgtcgcttaagcgaagtgagccttagtcagcctt 29614884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 14616191 - 14616261
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||  ||||||||||||||||| ||||||||| | | | | ||||||||||||||||||||||    
T  14616191 atgttgcattaag--gagtggtgagtcatatagatacatatgcatttgttggagttgtatgtagatatacaca 14616261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 19588514 - 19588571
Alignment:
Q  227 aggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    ||||| ||||||||||||||||||||||| | |  | |||||||||||||||||||||    
T  19588514 aggagaggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacac 19588571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 29615155 - 29615192
Alignment:
Q  249 acatatgtaatagtagagttgtatgtagatatacacag 286  Q
    |||||||||||||| |||||||||||||||||||||||    
T  29615155 acatatgtaatagtcgagttgtatgtagatatacacag 29615192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18799868 - 18799832
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcc 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  18799868 ctagccgtcgcttaagcgaagtcaaccttagtcagcc 18799832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19883589 - 19883549
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| | ||||||||    
T  19883589 ctagccgtcgcttaagcgaagtgaaccttaattagcctttt 19883549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 286
Target Start/End: Original strand, 19786825 - 19786864
Alignment:
Q  247 atacatatgtaatagtagagttgtatgtagatatacacag 286  Q
    ||||||||||| |||| |||||||||||||||||||||||    
T  19786825 atacatatgtagtagtcgagttgtatgtagatatacacag 19786864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 31251832 - 31251725
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttccttagcttgtat 106  Q
    ||||| ||||||| ||  ||||||||| ||||||| ||||||||| ||||||   |||||| ||| ||| ||||||  |  ||||| |||||||||||||    
T  31251832 tcgctcaagcgaactgggccttagtcaacctttttttgaaccttgcttcgtgcaataggggtcccttttgagtacttctaggtgttcccttagcttgtat 31251733  T
Q  107 aactcttg 114  Q
    ||||||||    
T  31251732 aactcttg 31251725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 5 - 286
Target Start/End: Complemental strand, 11847518 - 11847237
Alignment:
Q  5 ccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttcct-tagctt 102  Q
    |||||||||||||||  ||| ||||||||||||| ||||||||| ||| || |||  ||||||||||| ||| |||| |  |  ||||||| | ||||||    
T  11847518 ccgtcgcttaagcgagctgagccttagtcagcctctttctgaactttgctttgtgcactaggggacccttttgagtatttgtaagtgtttcttctagctt 11847419  T
Q  103 gtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaacta 202  Q
    ||||||||||||  ||||||||| |||| || ||||||| |||||| | || ||||||||||||||||||||||| |||||||||||| | |||||||||    
T  11847418 gtataactcttgtataggtatctgatcctac-ttaaacacaatgataattgatttggttgatttctatgaatttt-ggagatgttgaagtatgtgaacta 11847321  T
Q  203 ggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacag 286  Q
     |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||    
T  11847320 agtgaatgaacatgttgcattaaaaggagtggtgagtcatatatatacatatataatagtcgagttgtatgaagatatacacag 11847237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 4 - 165
Target Start/End: Complemental strand, 53483056 - 53482895
Alignment:
Q  4 gccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttgttcgtgagctaggggaccccttttagtact-cttgtgtgtttccttagctt 102  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| || | |||||||||| |||||||||| ||||| ||| ||||||||||||||||    
T  53483056 gccgtcgcttaagcgaagtgaaccttagtcagcctttt-ctgaaccctgcttgtgagctaggagacccctttttgtacttcttatgtgtttccttagctt 53482958  T
Q  103 gtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatt 165  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||    
T  53482957 gtataactcttgtttaggtatctaatcctactttaaacataatgatgaatggtttggttgatt 53482895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 27905527 - 27905398
Alignment:
Q  155 tttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatat 254  Q
    ||||||| |||| |||||||||| |||||||||||| |   ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  27905527 tttggttaatttttatgaatttt-ggagatgttgaagtacttgaactaagtgaatgaacatgttgcattaa-aggggtggtgagtcatataaatacatat 27905430  T
Q  255 gtaatagtag-agttgtatgtagatatacaca 285  Q
    | | | || | |||||||||||||||||||||    
T  27905429 gcatttgttgaagttgtatgtagatatacaca 27905398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 8046531 - 8046578
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaac 48  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||    
T  8046531 ctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaac 8046578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 15325130 - 15325062
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||  ||||||||||||||||||||||||||| | |  | |||||||||||||||||||||    
T  15325130 atgttgcattaag--gagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacac 15325062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 1650990 - 1651047
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    ||||||||||||||||||| |||||||| | |||| |||||||| |||||||||||||    
T  1650990 ggagtggtgagtcatataagtacatatgcattagtggagttgtaagtagatatacaca 1651047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 15407154 - 15407097
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | |  | ||||||||||||||||||||||    
T  15407154 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacaca 15407097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 16147468 - 16147519
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg 52  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||||    
T  16147468 ctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaaccttg 16147519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 285
Target Start/End: Complemental strand, 14485767 - 14485697
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtag-agttgtatgtagatatacaca 285  Q
    ||||||||||||| ||  |||||||||||||||||||||||| | | || | |||||||||||||||||||||    
T  14485767 atgttgcattaagggg--tggtgagtcatataaatacatatgcatttgttgaagttgtatgtagatatacaca 14485697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 8046855 - 8046890
Alignment:
Q  251 atatgtaatagtagagttgtatgtagatatacacag 286  Q
    |||||||||||| |||||||||||||||||||||||    
T  8046855 atatgtaatagtcgagttgtatgtagatatacacag 8046890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 24214 - 24492
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttcctt-agcttgta 105  Q
    ||||||||||||  ||| |||||||||| || ||||||||| ||| ||||||  ||||||||||| ||| |||  | ||  ||||||| || ||||||||    
T  24214 tcgcttaagcgagatgagccttagtcagtctctttctgaactttgcttcgtgcactaggggacccttttgagtgtttttaagtgtttcttttagcttgta 24313  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||| ||||  |||| ||| ||||| || ||||||| |||||||| |  ||||||| |||| | |||||||| |||||||||||| |   ||||||| ||    
T  24314 taacccttgtgtaggcatcaaatcctac-ttaaacacaatgatgattaatttggttaatttttctgaatttt-ggagatgttgaagtacttgaactaagt 24411  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtag-agttgtatgtagatatacaca 285  Q
    |||||||||||||||||||| ||| |||| |||||||||||||||||||| | | || | |||||||||||||||||||||    
T  24412 gaatgaacatgttgcattaaaaggggtggcgagtcatataaatacatatgcatttgttgaagttgtatgtagatatacaca 24492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 11196 - 11440
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgttt-ccttagcttgta 105  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||  ||||||||||| ||| |||||| ||  ||||||   ||||||||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaaccttgcttcgtgcactaggggacccttttgagtacttttaagtgtttattttagcttgta 11295  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||||||||  |||| ||| ||||| || |||||||  ||| | ||| | |||||| |||| |||||| |||||||||||||||| |   ||||  | ||    
T  11296 taactcttgtataggcatcaaatcctac-ttaaacacgatg-ttaattgattggttaattt-tatgaa-ttttggagatgttgaagtacttgaatcaagt 11391  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg 255  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  11392 gaatgaacatgttgcattaa-aggggtggtgagtcatataaatacatatg 11440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 34829494 - 34829216
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgta 105  Q
    ||||||||||||| ||| ||||||||| ||||||||||||| ||| ||||||  ||||||||||| ||||||||||  |  |||||||  |||| |||||    
T  34829494 tcgcttaagcgaactgagccttagtcaacctttttctgaactttgcttcgtgcactaggggaccctttttagtacttctaagtgtttcttttagattgta 34829395  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||||||||  |||| ||| ||||| || |||||||  ||| | | || ||||||| |||| |||||| |||||||||||||||| |   ||||  | ||    
T  34829394 taactcttgtataggcatcaaatcctac-ttaaacacgatgttaattgatttggttaatttttatgaa-ttttggagatgttgaagtacttgaatcaagt 34829297  T
Q  206 gaatgaacatgttgcatt-aagaggagtggtgagtcatataaatacatatgtaatagtag-agttgtatgtagatatacaca 285  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||| | | || | |||||||||||||||||||||    
T  34829296 gaatgaacatgttgcattaaaaaggagtggtgagtcatat-aatacatatgcatttgttgaagttgtatgtagatatacaca 34829216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 20772187 - 20772105
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||  |||||||||||||||||| | ||||||||   || | || ||||||||||||||||||||||    
T  20772187 gtgaatgaacatgttgcatta--aggagtggtgagtcatattagtacatatgcattagtcgttgagttgtatgtagatatacaca 20772105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 20780962 - 20780880
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||  |||||||||||||||||| | ||||||||   || | || ||||||||||||||||||||||    
T  20780962 gtgaatgaacatgttgcatta--aggagtggtgagtcatattagtacatatgcattagttgttgagttgtatgtagatatacaca 20780880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 24930767 - 24930848
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||||||||||  |||||||||||||||||| | ||||||||   || | || |||||||||||||||||||||    
T  24930767 gtgaatgaacatgttgcatta--aggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 24930848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 6728179 - 6728249
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||  ||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||    
T  6728179 atgttgcattaag--gagtggtgagtcatataaatacatatgcatttgttggagttgtatgtagatatacaca 6728249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23527987 - 23527947
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  23527987 ctagccgtcgcttaagcgaagtgaaccttaatcagcctttt 23527947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 96 - 285
Target Start/End: Original strand, 11744 - 11932
Alignment:
Q  96 ttagcttgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtg 195  Q
    |||||||||||||| ||||  |||| ||| ||||| || ||||||| |||||| | || ||||||| |||| |||||||||| |||||||||||  |       
T  11744 ttagcttgtataacccttgtataggcatcaaatcctac-ttaaacacaatgataattgatttggttaatttttatgaatttt-ggagatgttgatgtact 11841  T
Q  196 tgaactaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtag-agttgtatgtagatatacaca 285  Q
    ||||||| ||||||||| |||||||||||| ||| ||||||||||||||||||||||||| | | || | |||||||||||||||||||||    
T  11842 tgaactaagtgaatgaatatgttgcattaaaaggggtggtgagtcatataaatacatatgcatttgttgaagttgtatgtagatatacaca 11932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 493672 - 493948
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgta 105  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||  ||||||||||| ||| |||| | ||   ||||||  ||||||||||    
T  493672 tcgcttaagcgaactgagccttagtcagcctttttctgaaccttgcttcgtgcactaggggacccttttgagtatttttaaatgtttcttttagcttgta 493771  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    |||||||||  |||| ||| ||||| || |||||||  ||| | ||| | |||||| |||| |||||| |||||||||||||||| |   ||||  | ||    
T  493772 taactcttgtataggcatcaaatcctac-ttaaacacgatg-ttaattgattggttaattt-tatgaa-ttttggagatgttgaagtacttgaatcaagt 493867  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||| ||||||||||||||  ||| |||||||||||||||| ||||||||   |  | || ||||||||||||||||||||||    
T  493868 gaataaacatgttgcatta--aggggtggtgagtcatataagtacatatgcatttgttgttgagttgtatgtagatatacaca 493948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 285
Target Start/End: Complemental strand, 72603 - 72416
Alignment:
Q  96 ttagcttgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtg 195  Q
    ||||||| |||||| ||||  || ||||| ||||| || | ||||| |||||| | || ||||||| |||| |||||||||| |||||||||||| |       
T  72603 ttagcttatataacccttgtataagtatcaaatcctac-tgaaacacaatgataattgatttggttaatttttatgaatttt-ggagatgttgaagtact 72506  T
Q  196 tgaactaggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtag-agttgtatgtagatatacaca 285  Q
    ||||||| |||||||||||||||| ||||| ||| ||| ||||||||||||||||||||| | | || | |||||||||||||||||||||    
T  72505 tgaactaagtgaatgaacatgttgtattaa-aggggtgttgagtcatataaatacatatgcatttgttgaagttgtatgtagatatacaca 72416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 41455798 - 41455845
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaac 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455798 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaac 41455845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 19235907 - 19235988
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||||||||||  |||||||||||||||||| | ||||||||   || | || |||||||||||||||||||||    
T  19235907 gtgaatgaacatgttgcatta--aggagtggtgagtcatatgagtacatatgcattagtcgttgagttgtatgtagatatacac 19235988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 12034254 - 12034303
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg 255  Q
    |||||||||||||||||||||  ||| |||||||||||||||| ||||||||    
T  12034254 gtgaatgaacatgttgcatta--aggggtggtgagtcatataagtacatatg 12034303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 24192310 - 24192274
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  24192310 ctagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 18900240 - 18900193
Alignment:
Q  238 gtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||| ||||||||| | |||| ||||||||||||||||||||||    
T  18900240 gtcatatatatacatatgcattagttgagttgtatgtagatatacaca 18900193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 14865255 - 14865211
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg 52  Q
    ||||||||||||| |||   |||||||||||||||||||||||||    
T  14865255 tcgcttaagcgaactgagtgttagtcagcctttttctgaaccttg 14865211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 3904 - 4182
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgta 105  Q
    ||||||||||||| ||| | ||||||||||||||| ||||||||| ||||||  ||||||||||| ||| ||||||  |  |||||||  ||||||| ||    
T  3904 tcgcttaagcgaactgagcattagtcagcctttttttgaaccttgcttcgtgcactaggggacccttttgagtacttctaagtgtttcttttagcttata 4003  T
Q  106 taactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaactaggt 205  Q
    ||||| |||  |||  ||| ||||| || | |||||  | | | ||| | |||||| |||| |||||| |||||||||||||||| |   ||||  | ||    
T  4004 taactattgtatagacatcaaatcctacttaaaacacgaag-ttaattgattggttaattt-tatgaa-ttttggagatgttgaagtacttgaatcaagt 4100  T
Q  206 gaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||||||| ||||||||||| ||| |||||||||||||||| ||||||||   |  | || ||||||||||||||||||||||    
T  4101 gaatgaacttgttgcattaa-aggggtggtgagtcatataagtacatatgcatttgttgttgagttgtatgtagatatacaca 4182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0706 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0706
Description:

Target: scaffold0706; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 214 - 285
Target Start/End: Original strand, 3248 - 3318
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||  ||||||||||||||||||||||||||||| | | | ||||||||||||||||||||||    
T  3248 atgttgcattaag--gagtggtgagtcatataaatacatatgtatttgttggagttgtatgtagatatacaca 3318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0206 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 18099 - 17819
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgt----gtgtttc-cttagct 101  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||  |||| |||||| ||| |||| | || |     ||||||  ||||||    
T  18099 tcgcttaagcgaactgagccttagtcagcctttttctgaaccttgcttcgtgcactagaggacccttttgagtatttttttttaaatgtttcttttagct 18000  T
Q  102 tgtataactcttgcttaggtatctaatcccacattaaacataatgatgaatggtttggttgatttctatgaatttttggagatgttgaaatgtgtgaact 201  Q
    ||||||||||| |  |||| ||| ||||| || |||||||  ||| | ||| | |||||| |||| |||||| ||||||||||||||||     ||||      
T  17999 tgtataactctggtataggcatcaaatcctac-ttaaacacgatg-ttaattgattggttaattt-tatgaa-ttttggagatgttgaagaacttgaatc 17904  T
Q  202 aggtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    | |||||| ||||||||||||||  ||| |||||||||||||||| ||||||||   |  | || ||||||||||||||||||||||    
T  17903 aagtgaataaacatgttgcatta--aggggtggtgagtcatataagtacatatgcatttgttgttgagttgtatgtagatatacaca 17819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 3091 - 3044
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaac 48  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3091 ctagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaac 3044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 286
Target Start/End: Complemental strand, 2807 - 2750
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacacag 286  Q
    ||||| || |||||||| || ||||||||| |||| |||||||||||||||||||||||    
T  2807 ggagtagtaagtcatatgaa-acatatgtattagttgagttgtatgtagatatacacag 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23865970 - 23865923
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaac 48  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  23865970 ctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaac 23865923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 10607178 - 10607120
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagt-agagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | | ||  ||||||||||||||||||||||    
T  10607178 ggagtggtgagtcatataaatacatatgcatttgtcggagttgtatgtagatatacaca 10607120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 20973956 - 20974009
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatata 281  Q
    |||||||||||||||||||||||||||| | |  | ||||||||||||||||||    
T  20973956 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatata 20974009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 22175993 - 22176050
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  22175993 ggagtggtgagtcatatacatatatatgcattggttgagttgtatgtagatatacaca 22176050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 284
Target Start/End: Original strand, 41009380 - 41009448
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||  |||||||||||||||| ||| |||||| | |  | |||||||||||||||||||||    
T  41009380 atgttgcattaag--gagtggtgagtcatatgaatgcatatgcattgttggagttgtatgtagatatacac 41009448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 41
Target Start/End: Complemental strand, 17053962 - 17053928
Alignment:
Q  7 gtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    |||||||||||||||||||||||| ||||||||||    
T  17053962 gtcgcttaagcgaagtgaaccttaatcagcctttt 17053928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 22063521 - 22063578
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||| ||| ||||| |   || ||||||||||||||||||||||    
T  22063521 ggagtggtgagtcatatacatatatatgcataggttgagttgtatgtagatatacaca 22063578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 204 - 285
Target Start/End: Complemental strand, 8575 - 8492
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg---taatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||   |  | || ||||||||||||||||||||||    
T  8575 gtgaatgaacatgttgcattaaaagg-gtggtgagtcatataagtacatatgcatttgttgttgagttgtatgtagatatacaca 8492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 153275 - 153332
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | |  | ||||||||||||||||||||||    
T  153275 ggagtggtgagtcatataaatacatatgcattgttggagttgtatgtagatatacaca 153332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 20452 - 20509
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||| ||| ||||| |   || ||||||||||||||||||||||    
T  20452 ggagtggtgagtcatatacatatatatgcataggttgagttgtatgtagatatacaca 20509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 114
Target Start/End: Complemental strand, 134882 - 134774
Alignment:
Q  7 gtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccccttttagtactcttgtgtgtttc-cttagcttgt 104  Q
    |||||||||||||| ||| | |||||||||| ||||||||| |||| ||||||  ||||||||||| ||| ||||||  |  ||||||| ||||||| ||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcc-ttttctgaatcttgcttcgtgcactaggggacccttttgagtacttctaagtgtttctcttagctggt 134784  T
Q  105 ataactcttg 114  Q
    ||||| ||||    
T  134783 ataacccttg 134774  T

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Target: scaffold0456 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 407 - 367
Alignment:
Q  7 gtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 47  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaa 367  T

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Target: scaffold0456; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 47
Target Start/End: Complemental strand, 7552 - 7512
Alignment:
Q  7 gtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 47  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaa 7512  T

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Target: scaffold0097 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 284
Target Start/End: Complemental strand, 28118 - 28050
Alignment:
Q  214 atgttgcattaagaggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacac 284  Q
    |||||||||||||  |||||||||||||||| |||||||||| | |  | |||||||||||||||||||||    
T  28118 atgttgcattaag--gagtggtgagtcatatgaatacatatgcattgttggagttgtatgtagatatacac 28050  T

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Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 4509 - 4559
Alignment:
Q  204 gtgaatgaacatgttgcattaagaggagtggtgagtcatataaatacatatg 255  Q
    |||||||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  4509 gtgaatgaacatgttgcattaaaagg-gtggtgagtcatataagtacatatg 4559  T

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Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 80128 - 80179
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg 52  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||||    
T  80128 ctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaaccttg 80179  T

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Target: scaffold0342 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0342
Description:

Target: scaffold0342; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 16824 - 16882
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||    
T  16824 ggagtggtgagtcatataaatacatatgcatttgttggagttgtatgtagatatacaca 16882  T

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Target: scaffold0249 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 14730 - 14787
Alignment:
Q  227 aggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||| ||||||||  || || ||||||||||||||||||||||    
T  14730 aggagtggtgagtcatataagtacatatg-cattgttgagttgtatgtagatatacaca 14787  T

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Target: scaffold0203 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 17036 - 17094
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||    
T  17036 ggagtggtgagtcatataaatacatatgcatttgttggagttgtatgtagatatacaca 17094  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 327017 - 326959
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | | | | ||||||||||||||||||||||    
T  327017 ggagtggtgagtcatataaatacatatgcatttgttggagttgtatgtagatatacaca 326959  T

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Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 321308 - 321250
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||||| ||||||||||| | | | | ||||||||||||||||||||||    
T  321308 ggagtggtgagtcataaaaatacatatgcatttgttggagttgtatgtagatatacaca 321250  T

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Target: scaffold0664 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0664
Description:

Target: scaffold0664; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 2375 - 2318
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  2375 ggagtggtgagtcatatacatatatatgcatttgttgagttgtatgtagatatacaca 2318  T

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Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 13348 - 13405
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||| ||||||||||||| | |  | ||||||||||||||||||||||    
T  13348 ggagtggtgagtcacataaatacatatgcattgttggagttgtatgtagatatacaca 13405  T

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Target: scaffold0120 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 4994 - 5051
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  4994 ggagtggtgagtcatatacatatatatgcatttgttgagttgtatgtagatatacaca 5051  T

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Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 12534 - 12575
Alignment:
Q  7 gtcgcttaagcgaagtgaaccttagtcagcctttttctgaac 48  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaac 12575  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 71332 - 71275
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  71332 ggagtggtgagtcatatacatatatatgcattggttgagttgtatgtagatatacaca 71275  T

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Target: scaffold0025; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15085 - 15121
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcc 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15085 ctagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

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Target: scaffold1773 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 536 - 496
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  536 ctagccgtcgcttaagcgaagtgagtcttagtcagcctttt 496  T

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Target: scaffold1773; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 191 - 156
Alignment:
Q  251 atatgtaatagtagagttgtatgtagatatacacag 286  Q
    |||||||||||| |||||||||||||||||||||||    
T  191 atatgtaatagttgagttgtatgtagatatacacag 156  T

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Target: scaffold0323 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 7491 - 7435
Alignment:
Q  229 gagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    ||||||||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  7491 gagtggtgagtcatatacatatatatgcattggttgagttgtatgtagatatacaca 7435  T

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Target: scaffold0117 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9275 - 9315
Alignment:
Q  1 ctagccgtcgcttaagcgaagtgaaccttagtcagcctttt 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  9275 ctagccgtcgcttaagcgaagtgagtcttagtcagcctttt 9315  T

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Target: scaffold0126 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 44434 - 44379
Alignment:
Q  230 agtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  44434 agtggtgagtcatatacatatatatgcatttgttgagttgtatgtagatatacaca 44379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 251 - 286
Target Start/End: Complemental strand, 110977 - 110942
Alignment:
Q  251 atatgtaatagtagagttgtatgtagatatacacag 286  Q
    |||||||||||| |||||||||||||||||||||||    
T  110977 atatgtaatagttgagttgtatgtagatatacacag 110942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0574 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0574
Description:

Target: scaffold0574; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 5835 - 5893
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatag-tagagttgtatgtagatatacaca 285  Q
    |||||||||||||||||||||||||||| | | | | |||||||||| |||||||||||    
T  5835 ggagtggtgagtcatataaatacatatgcatttgttggagttgtatgaagatatacaca 5893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 227 - 285
Target Start/End: Complemental strand, 29990 - 29932
Alignment:
Q  227 aggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||| |||||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  29990 aggagttgtgagtcatatacatatatatgcattggttgagttgtatgtagatatacaca 29932  T

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Target: scaffold0154; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 30311 - 30247
Alignment:
Q  8 tcgcttaagcgaagtgaaccttagtcagcctttttctgaaccttg-ttcgtgagctaggggaccc 71  Q
    ||||||||||||||||| ||||||||||||  ||||||||  ||| ||||||  |||||||||||    
T  30311 tcgcttaagcgaagtgagccttagtcagccactttctgaattttgcttcgtgcactaggggaccc 30247  T

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Target: scaffold0226 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 5391 - 5334
Alignment:
Q  228 ggagtggtgagtcatataaatacatatgtaatagtagagttgtatgtagatatacaca 285  Q
    |||||||| ||||||||| ||| ||||| | | || ||||||||||||||||||||||    
T  5391 ggagtggtaagtcatatacatatatatgcattggttgagttgtatgtagatatacaca 5334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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