View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12192_high_3 (Length: 395)
Name: NF12192_high_3
Description: NF12192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12192_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 49866502 - 49866865
Alignment:
| Q |
20 |
cattattggttgctgtgagatattataggttcagcaaattataggttcactagatgcagtaagcaaatatgacatgttgagaataggaggtgaagttaaa |
119 |
Q |
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| T |
49866502 |
cattattggttgctgcgagatattataggttcagcaaattataggttcactagatgcagtaagcaaatatgt-atgttgagaataggaggtgaagttaaa |
49866600 |
T |
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| Q |
120 |
tggcaaatatgacatattgatgatgtccatccatgcatgtagatgaacatcattaaaaacacgagttttgcatccgtaaaagatagtcatctggcggctg |
219 |
Q |
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| T |
49866601 |
tggcaaatatgacatattgatgatgtccatccatgcatgtagatgaacatcattaaaaacacgagttttgcatccgtaaaa-atagtcatctggcggctg |
49866699 |
T |
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| Q |
220 |
gcagatgttagcccatgttgactactgtcaatatcaaaatgcataacttaagcaacttctcctttttccaaggtaaggggaatgaaattaaatagaatta |
319 |
Q |
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| T |
49866700 |
gcagatgttagcccatgttgactactgtcaatatcaaaatgcataacttaagcaacttctcctttttccaaggtaaggggaatgaaattaaatagaatta |
49866799 |
T |
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| Q |
320 |
ttattattcttggtgttctctttatcagacaatacaaattgttcttcacacaataatacacaggtt |
385 |
Q |
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| T |
49866800 |
ttattattgttggtgttctctttatcagacaatacaaattgttcttcacacaataatacacaggtt |
49866865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 166 - 316
Target Start/End: Original strand, 49873333 - 49873482
Alignment:
| Q |
166 |
acatcattaaaaacacgagttttgcatccgtaaaagatagtcatctggcggctggcagatgttagcccatgttgactactg-tcaatatcaaaatgcat- |
263 |
Q |
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| T |
49873333 |
acatcatcaaaaacatgagcttgacctccataaaagatagtcatctggcggctggcagctgttagcccatgttgactactgctcaatgccaaaatgcata |
49873432 |
T |
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| Q |
264 |
aacttaagcaacttctcctttttccaaggtaaggggaatgaaattaaatagaa |
316 |
Q |
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| T |
49873433 |
aagtcaatcaactt---ctttttccaaggtaaagggagtgaaaataaatagaa |
49873482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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