View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12192_low_3 (Length: 469)

Name: NF12192_low_3
Description: NF12192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12192_low_3
NF12192_low_3
[»] chr4 (15 HSPs)
chr4 (18-357)||(3957533-3957872)
chr4 (355-459)||(3959176-3959280)
chr4 (18-352)||(3984753-3985087)
chr4 (18-351)||(4022830-4023163)
chr4 (25-351)||(4007672-4007998)
chr4 (24-352)||(3999874-4000202)
chr4 (113-351)||(3998681-3998919)
chr4 (252-346)||(3815439-3815533)
chr4 (250-357)||(3922309-3922416)
chr4 (250-348)||(3935669-3935767)
chr4 (18-122)||(3808083-3808187)
chr4 (18-129)||(3922074-3922185)
chr4 (18-82)||(3815697-3815761)
chr4 (58-129)||(3935474-3935545)
chr4 (306-348)||(3807848-3807890)
[»] chr8 (1 HSPs)
chr8 (355-459)||(19167917-19168021)
[»] scaffold0060 (1 HSPs)
scaffold0060 (355-410)||(18706-18761)


Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 3957533 - 3957872
Alignment:
Q  18 aagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttt 117  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957533 aagtagtgttccagagtggttcaagtacaggacagcacaggatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttt 3957632  T
Q  118 tgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagta 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957633 tgctccatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagta 3957732  T
Q  218 tcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagca 317  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  3957733 tcttcatgtataggtattttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcacgctacctaactagcatagcaaaaaagca 3957832  T
Q  318 gacaaggtttaaaatcaaggttacagcaaggacaacaccc 357  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3957833 gacaaggtttaaaatcaaggttacagcaaggacaacaccc 3957872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 355 - 459
Target Start/End: Original strand, 3959176 - 3959280
Alignment:
Q  355 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3959176 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 3959275  T
Q  455 ctgtg 459  Q
    |||||    
T  3959276 ctgtg 3959280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 3985087 - 3984753
Alignment:
Q  18 aagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttt 117  Q
    ||||||||||||||||||||| ||||||| |||| || |  ||||||||||| |||||||||| ||   |   ||||||||||||||||||||||||||     
T  3985087 aagtagtgttccagagtggttggagtacaagacaacaaagaatgatatgattgttgatctctcaccacctcatctctcccctttgttgggctttgttttc 3984988  T
Q  118 tgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagta 217  Q
    ||||||||||||||| |||||||| ||| |||  ||   || ||||| || ||| ||||| |||||| || || ||| |  ||||| |||||||||  ||    
T  3984987 tgcttcatccttgccgaggactccaaatattgcgacattatggaatttaacatctctacatttgatggtgagggtgacggtgaaaaagatggtgtcgata 3984888  T
Q  218 tcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagca 317  Q
    ||| |||||||||| | | || || || |   | ||||||||| |||||||||||||||| ||||||||| | ||||||||| |||||||| ||||  ||    
T  3984887 tctacatgtataggacatgttgctatactgaattagatcatgtgtgcatgatatacgaccaaccatgttctcactacctaaccagcatagccaaaagtca 3984788  T
Q  318 gacaaggtttaaaatcaaggttacagcaaggacaa 352  Q
    ||||  | |||||||||||||||||||||||||||    
T  3984787 gacacaggttaaaatcaaggttacagcaaggacaa 3984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 4023163 - 4022830
Alignment:
Q  18 aagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttt 117  Q
    ||||||| ||||||||||||| ||||||| |||| || | ||||| |||||| |||||||||||||   ||  |||||||||||| ||||||||||||||    
T  4023163 aagtagtattccagagtggttggagtacaagacaacaaaggatgacatgattgttgatctctctccacattatctctcccctttgctgggctttgttttt 4023064  T
Q  118 tgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagta 217  Q
    |||||  ||||||| ||||||  ||| | |||| ||| |||||||||||| |||||||||| ||||| ||  | ||| || ||||||| ||| |||| ||    
T  4023063 tgctttgtccttgctaaggacatccattattgtgaccgaattgaattgaacatcactacaaatgatgctgaaggtgacgatgaaaagggtggcgtcaata 4022964  T
Q  218 tcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagca 317  Q
    | | |||| ||||  |   | ||  || |   ||||||||||| |||||||||||||||| ||||| ||| | ||||||||||||||||||||| ||  |    
T  4022963 tatacatggatagaacacgtctcggtattgcatcagatcatgtgtgcatgatatacgaccaaccattttctcactacctaactagcatagcaaacaataa 4022864  T
Q  318 gacaaggtttaaaatcaaggttacagcaaggaca 351  Q
    || ||||||||||||||||||||| |||||||||    
T  4022863 gagaaggtttaaaatcaaggttacggcaaggaca 4022830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 25 - 351
Target Start/End: Complemental strand, 4007998 - 4007672
Alignment:
Q  25 gttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttca 124  Q
    ||||| |||||||| | |||||  ||| |||| |||||||||||| ||||||||| |||   |   ||| ||||||||||||||||||||||||||||||    
T  4007998 gttcctgagtggttggcgtacaaaacaacacaggatgatatgattgttgatctctttccaaatcatctcccccctttgttgggctttgttttttgcttca 4007899  T
Q  125 tccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttcat 224  Q
    |||||||  |||| | ||||  |||| | |||||||| || || |||| |||||||||||    ||||||||| |||||||||||||||||||| | |||    
T  4007898 tccttgctgaggattaccaacattgtgaacaaattgagttcaacatcagtacaattgatgacaaggatgatgatgaaaaggatggtgtcagtatttacat 4007799  T
Q  225 gtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaagg 324  Q
    | ||||| |   | ||  || |   ||||||||||| ||||||||| |||||| || |||||| || |||||||||||  ||||||| || || ||||||    
T  4007798 gaataggacacctctcggtattgcatcagatcatgtgtgcatgatacacgaccaacgatgttctcggtacctaactagagtagcaaagaatcatacaagg 4007699  T
Q  325 tttaaaatcaaggttacagcaaggaca 351  Q
    |||||||||||||||||||||||||||    
T  4007698 tttaaaatcaaggttacagcaaggaca 4007672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 352
Target Start/End: Complemental strand, 4000202 - 3999874
Alignment:
Q  24 tgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttc 123  Q
    ||||| ||||||||| ||||||| |||| || | ||||| |||||| || || |||||||  ||   |||||| |||||||||||||||||||||||||     
T  4000202 tgttcgagagtggttggagtacaagacaacagaggatgacatgattgttaatatctctccacttcatctctcctctttgttgggctttgttttttgcttt 4000103  T
Q  124 atccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgtcagtatcttca 223  Q
     ||||||| |||| |||| | | ||||||| |||||| |||||| |||||| |||||||||||| || |||||  |||||||||||||||  ||| | ||    
T  4000102 gtccttgctaaggtctccaattattgttacaaaattgtattgaacatcactgcaattgatgttgagggtgatggtgaaaaggatggtgtcgatatataca 4000003  T
Q  224 tgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaag 323  Q
    || ||  |  |  | | | || |  |||||||||||| || ||||||||||||||||||| ||| |  ||||||||||| ||||| ||||| || |||||    
T  4000002 tggatgtggatcgtgtttgtaataattcagatcatgtgtgtatgatatacgacccaccattttctcagtacctaactagaatagcgaaaaatcatacaag 3999903  T
Q  324 gtttaaaatcaaggttacagcaaggacaa 352  Q
    ||| |||||||||||| ||||||||||||    
T  3999902 gttcaaaatcaaggttgcagcaaggacaa 3999874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 113 - 351
Target Start/End: Complemental strand, 3998919 - 3998681
Alignment:
Q  113 ttttttgcttcatccttgccaaggactcccaattttgttaccaaattgaattgaatatcactacaattgatgttgtggatgatgaagaaaaggatggtgt 212  Q
    |||||||||||||||||||  |||||| ||||  ||||   |||||||| || || ||||||||||||||||    ||||||||| |||||||| |||||    
T  3998919 ttttttgcttcatccttgctgaggactaccaacattgtgcacaaattgagttcaacatcactacaattgatgacaaggatgatgatgaaaaggacggtgt 3998820  T
Q  213 cagtatcttcatgtataggtcttttttctctagtttttcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaa 312  Q
    |||||| | |||| ||||| |   | ||  || |   ||||||||||| ||||||||| || ||| || |||||| || |||||||||||  |||||||     
T  3998819 cagtatttacatgaataggacacctctcagtattgcatcagatcatgtgtgcatgatacacaaccaacaatgttctcggtacctaactagtgtagcaaag 3998720  T
Q  313 aagcagacaaggtttaaaatcaaggttacagcaaggaca 351  Q
    || || |||||||||||||| ||||||||||||||||||    
T  3998719 aatcatacaaggtttaaaattaaggttacagcaaggaca 3998681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 346
Target Start/End: Complemental strand, 3815533 - 3815439
Alignment:
Q  252 agatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaa 346  Q
    ||||||||||||||||||| | |||| || ||||||  | ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||    
T  3815533 agatcatgtatgcatgatacaggaccaacgatgttctgggtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaa 3815439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 3922309 - 3922416
Alignment:
Q  250 tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagga 349  Q
    ||||||||||| || ||||| ||||||| ||| ||||| |   |||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||    
T  3922309 tcagatcatgtgtgtatgatttacgaccaaccttgttctcagcacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcatgga 3922408  T
Q  350 caacaccc 357  Q
    ||| ||||    
T  3922409 caataccc 3922416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 250 - 348
Target Start/End: Original strand, 3935669 - 3935767
Alignment:
Q  250 tcagatcatgtatgcatgatatacgacccaccatgttcgcgctacctaactagcatagcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg 348  Q
    ||||||||||| || ||||| ||||||| ||| || || |  ||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||    
T  3935669 tcagatcatgtgtgtatgatttacgaccaaccttgctctcagtacctaactagaatagcaaaaaatcagacaagctttaaaatcaaggttacagcaagg 3935767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 3808187 - 3808083
Alignment:
Q  18 aagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttt 117  Q
    ||||| ||||||||||||||| ||||||| |||| || | ||||| | |||| |||||||||||||   |  ||||||||| ||||||||||||||||||    
T  3808187 aagtaatgttccagagtggtttgagtacaagacaacaaaggatgacaagattgttgatctctctccacctcacctctcccccttgttgggctttgttttt 3808088  T
Q  118 tgctt 122  Q
    |||||    
T  3808087 tgctt 3808083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 3922074 - 3922185
Alignment:
Q  18 aagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttt 117  Q
    ||||||||||||| ||||||| ||||||| |||| ||   ||||  |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||    
T  3922074 aagtagtgttccaaagtggttggagtacaagacaacaatggatggcatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttt 3922173  T
Q  118 tgcttcatcctt 129  Q
    ||||| ||||||    
T  3922174 tgctttatcctt 3922185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 3815761 - 3815697
Alignment:
Q  18 aagtagtgttccagagtggttcgagtacaggacagcacatgatgatatgattattgatctctctc 82  Q
    ||||||| ||||||||||||| ||||||| |||| || | |||||||||||||||||||||||||    
T  3815761 aagtagtattccagagtggttggagtacaagacaacaaaggatgatatgattattgatctctctc 3815697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 3935474 - 3935545
Alignment:
Q  58 gatgatatgattattgatctctctccttttttcctctcccctttgttgggctttgttttttgcttcatcctt 129  Q
    ||||| |||||| |||||||||||||  ||   ||||||||||||||||| |||||||||||||| ||||||    
T  3935474 gatgacatgattgttgatctctctccacttcatctctcccctttgttgggttttgttttttgctttatcctt 3935545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Complemental strand, 3807890 - 3807848
Alignment:
Q  306 agcaaaaaagcagacaaggtttaaaatcaaggttacagcaagg 348  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||    
T  3807890 agcaaaaaatcaggcaaggtttaaaatcaaggttacagtaagg 3807848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 355 - 459
Target Start/End: Complemental strand, 19168021 - 19167917
Alignment:
Q  355 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgtttacctggtcttcatctctagcaacatgggcagtagccgtgtccat 454  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |||||||||| ||    
T  19168021 cccattgagttcttaatatgctaacactcttcattgcagcagtactaggattgtttacctgatcttcatatctagcaacatgggcaatagccgtgtcaat 19167922  T
Q  455 ctgtg 459  Q
    |||||    
T  19167921 ctgtg 19167917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 410
Target Start/End: Complemental strand, 18761 - 18706
Alignment:
Q  355 cccattgagttcttaatatgcttacactcttcattgcagcagtactatgattgttt 410  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  18761 cccattgagttcttaatatgcttacactcttcattgaagcagtactaggattgttt 18706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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