View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12192_low_4 (Length: 462)

Name: NF12192_low_4
Description: NF12192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12192_low_4
NF12192_low_4
[»] chr1 (3 HSPs)
chr1 (18-452)||(46258850-46259274)
chr1 (133-224)||(24722669-24722760)
chr1 (151-211)||(18922905-18922965)
[»] scaffold0049 (1 HSPs)
scaffold0049 (136-309)||(8905-9079)
[»] chr5 (1 HSPs)
chr5 (133-223)||(27408121-27408211)
[»] chr4 (5 HSPs)
chr4 (141-221)||(4913370-4913450)
chr4 (131-222)||(22904581-22904671)
chr4 (131-222)||(22956249-22956339)
chr4 (142-222)||(43441336-43441416)
chr4 (153-209)||(50143554-50143610)
[»] chr8 (1 HSPs)
chr8 (145-224)||(30503002-30503081)
[»] chr7 (1 HSPs)
chr7 (177-224)||(35920774-35920821)
[»] chr2 (1 HSPs)
chr2 (136-225)||(30995423-30995512)
[»] chr3 (1 HSPs)
chr3 (151-211)||(51042279-51042339)


Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 452
Target Start/End: Complemental strand, 46259274 - 46258850
Alignment:
Q  18 gtaccatatattgatgaattgatattgtgattcnnnnnnnccaacaatgggtcgttatacatttatggatattgatatactagtatggtgtataataata 117  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46259274 gtaccatatattgatgaattgatattgtgattctttttttccaacaatgggtcgttatacatttatggatattgatatactagtatggtgtataataata 46259175  T
Q  118 gcattagtgcatgacatcaaggcggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagag 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||          ||||||||||||||||||||||||||||||||||||||||| |||||    
T  46259174 gcattagtgcatgacatcaaggcggtgtcttggtgttggtctt----------aagaattgcttcatgccttttctacgagtggtgttggaatccgagag 46259085  T
Q  218 agtgcatgacgcggaggtgaggtgactgcttcgggaggtctgattgggtgtggtaagatggtgcttagctgctgtttcggctgtttgtgctgcctgtgtg 317  Q
    ||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46259084 agtgcataaggcggaggtgaggtgactgctttgggaggtctgattgggtgtggtaagatggtgcttagctgctgtttcggctgtttgtgctggctgtgtg 46258985  T
Q  318 tcttggggttctgtggccttgtattttggccttcactgnnnnnnnnnnnnnnnnnnnnnctgttcggtactggtagtttggaatttggattcctgtgcct 417  Q
    ||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||||||||||||    
T  46258984 tcttggggttctgtggccttgtattttggccttcactgtgttaatttttcttttcttttttgttcggtactggtagtttggaatttggattcctgtgcct 46258885  T
Q  418 tctttctctcctgtattggctgtgcgctatctgtg 452  Q
      |||||||||| ||||||||||||||||||||||    
T  46258884 cttttctctcctatattggctgtgcgctatctgtg 46258850  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 224
Target Start/End: Original strand, 24722669 - 24722760
Alignment:
Q  133 atcaaggcggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgcat 224  Q
    ||||||||||||||||| ||||||||||||||| |||| ||||| ||||| || || |||| ||||||||||||||||| ||||||||||||    
T  24722669 atcaaggcggtgtcttggtgttggtctttgagtagattgagaatagcttcttgtctcttcttcgagtggtgttggaatccgagagagtgcat 24722760  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 18922905 - 18922965
Alignment:
Q  151 tgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatc 211  Q
    |||||||| |||||| ||||| | ||||| || ||||||| ||| ||||||||||||||||    
T  18922905 tgttggtcgttgagtagattacggattgcctcttgcctttactatgagtggtgttggaatc 18922965  T

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Target: scaffold0049 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 136 - 309
Target Start/End: Complemental strand, 9079 - 8905
Alignment:
Q  136 aaggcggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgcatgacgcggaggt 235  Q
    |||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| | | || ||||||||| ||||||||    
T  9079 aaggcggtgtcttgatgttggtctttgagtagattaaggattgcttcttgccttttctacgagtggtgttggaacccgtgaaagtgcatgaggcggaggt 8980  T
Q  236 ga-ggtgactgcttcgggaggtctgattgggtgtggtaagatggtgcttagctgctgtttcggctgtttgtgctg 309  Q
    || ||   |||||| |||||| ||| || || |||||| || |||| || || |||| || ||||| ||||||||    
T  8979 gacggctgctgcttggggaggcctgtttcggggtggtaggaaggtgttttgcggctgctttggctggttgtgctg 8905  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 27408211 - 27408121
Alignment:
Q  133 atcaaggcggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgca 223  Q
    ||||||||||||||||| ||||||||||| ||| |||| ||||| ||||| || || |||||||||||||||||||||| |||||||||||    
T  27408211 atcaaggcggtgtcttggtgttggtctttcagtagattgagaatagcttcttgtctcttctacgagtggtgttggaatccgagagagtgca 27408121  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 221
Target Start/End: Complemental strand, 4913450 - 4913370
Alignment:
Q  141 ggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtg 221  Q
    ||||||||| ||||||||||||||| |||| || || ||||| || || || ||||||||||||||||||| |||||||||    
T  4913450 ggtgtcttggtgttggtctttgagtagattgaggatagcttcttgtctcttttacgagtggtgttggaatccgagagagtg 4913370  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 22904671 - 22904581
Alignment:
Q  131 acatcaaggcggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgc 222  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || || ||||| || || |||||| ||||||||||||||| ||||||||||    
T  22904671 acattaaggcggtgtcttggtgttg-tctttgagtagattgaggatagcttcttgtctcttctacaagtggtgttggaatccgagagagtgc 22904581  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 222
Target Start/End: Complemental strand, 22956339 - 22956249
Alignment:
Q  131 acatcaaggcggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgc 222  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || || ||||| || || |||||| ||||||||||||||| ||||||||||    
T  22956339 acattaaggcggtgtcttggtgttg-tctttgagtagattgaggatagcttcttgtctcttctacaagtggtgttggaatccgagagagtgc 22956249  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Complemental strand, 43441416 - 43441336
Alignment:
Q  142 gtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgc 222  Q
    |||||||| ||||||||||||||| |||| || || | ||| ||| | || ||||||||||||||||||| ||||||||||    
T  43441416 gtgtcttggtgttggtctttgagtagattgaggatagtttcttgcttcttttacgagtggtgttggaatccgagagagtgc 43441336  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 50143554 - 50143610
Alignment:
Q  153 ttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaa 209  Q
    ||||||| ||||| |||| || || ||||| ||||| ||||||||||||||||||||    
T  50143554 ttggtctctgagtagattgaggatagcttcttgcctcttctacgagtggtgttggaa 50143610  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 30503081 - 30503002
Alignment:
Q  145 tcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgcat 224  Q
    ||||| |||||||| |||||| |||| || || ||||| | ||| |||||||||||||||||||||| ||||||||||||    
T  30503081 tcttggtgttggtcgttgagtagattgaggatagcttcttacctcttctacgagtggtgttggaatccgagagagtgcat 30503002  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 177 - 224
Target Start/End: Original strand, 35920774 - 35920821
Alignment:
Q  177 tgcttcatgccttttctacgagtggtgttggaatctgagagagtgcat 224  Q
    |||||| || |||||||||||||| |||||||||||||||||||||||    
T  35920774 tgcttcttgtcttttctacgagtgttgttggaatctgagagagtgcat 35920821  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 30995423 - 30995512
Alignment:
Q  136 aaggcggtgtcttgatgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatctgagagagtgcatg 225  Q
    |||||||||||||| |||||||| |||  |||| |  | || || || ||||| || ||||| ||||||||||||| |||||||||||||    
T  30995423 aaggcggtgtcttggtgttggtccttgtctcgacttcggatcgcatcttgcctattttacgaatggtgttggaatccgagagagtgcatg 30995512  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 51042279 - 51042339
Alignment:
Q  151 tgttggtctttgagtcgattaagaattgcttcatgccttttctacgagtggtgttggaatc 211  Q
    |||||||| |||||| ||||| | ||||| || ||||||| ||| ||||||||||||||||    
T  51042279 tgttggtcgttgagtagattacggattgcctcttgcctttactatgagtggtgttggaatc 51042339  T

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