View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12192_low_6 (Length: 324)
Name: NF12192_low_6
Description: NF12192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12192_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 29788550 - 29788257
Alignment:
| Q |
19 |
ataagggaatgcttcatgaagttcatcatccaagcacagaacaggttgattacaaagatggatatgaaacatggatgcaatctcagagaggaaggtggag |
118 |
Q |
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| T |
29788550 |
ataagggaatgcttcatgaatttcatcatccaagcacagaacaagttgattacaaagatggatatgaaacatggatgcaatctcagagaggaaggtggag |
29788451 |
T |
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| Q |
119 |
ggaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatatctgtcaacagatgagacgctgcgccaatcgaagcaattt |
218 |
Q |
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| T |
29788450 |
ggaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatatctgtcaacagatgagacgctgcgccaatcgaagcaattt |
29788351 |
T |
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| Q |
219 |
gaagatgcattggatattttaagctcaaacaatgaactcttggtcaggtttctagattcacaaaatatttatcaaattccctctactccacagg |
312 |
Q |
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| T |
29788350 |
gaagatgcattggatattttaagctcaaacaatgaactcttggtcaggtttctagattcacaaaatatttatcaaattccctctactccacagg |
29788257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 39872160 - 39872236
Alignment:
| Q |
21 |
aagggaatgcttcatgaagttcatcatccaagcacagaacaggttgattacaaagatggatatgaaacatggatgcaatc |
100 |
Q |
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| T |
39872160 |
aaggaaatgcttcatgaagttcatc---cgagcagagaacaggttgcttacaaagatatttatgaaatatggctgcaatc |
39872236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 39872289 - 39872413
Alignment:
| Q |
120 |
gaagatgttgatgaggggaagatggctctcgttcgtcagaaattcattgaagcaaaatatctgtcaacagatgagacgctgcgccaatcgaagcaatttg |
219 |
Q |
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||||||||| ||||| |||||||||||| | || || |||||||| |||||||| |||||| |||||||||| | | || ||||||||| | |||| |
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| T |
39872289 |
gaagatgttaatgagaagaagatggctcttatccgccaaaaattcatggaagcaaagcgtctgtctacagatgagaggttacgtcaatcgaaggagtttg |
39872388 |
T |
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| Q |
220 |
aagatgcattggatattttaagctc |
244 |
Q |
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| T |
39872389 |
aggaaacattggaagttttaagctc |
39872413 |
T |
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