View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12192_low_7 (Length: 316)

Name: NF12192_low_7
Description: NF12192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12192_low_7
NF12192_low_7
[»] chr7 (17 HSPs)
chr7 (25-228)||(39867381-39867584)
chr7 (18-228)||(19243422-19243647)
chr7 (232-269)||(42419042-42419079)
chr7 (232-269)||(13744246-13744283)
chr7 (232-269)||(18864415-18864452)
chr7 (232-269)||(22740604-22740641)
chr7 (232-269)||(48359323-48359360)
chr7 (226-269)||(3204666-3204708)
chr7 (227-269)||(37888831-37888874)
chr7 (232-269)||(9035306-9035344)
chr7 (232-269)||(10533037-10533075)
chr7 (232-269)||(20418891-20418929)
chr7 (232-269)||(29292925-29292963)
chr7 (232-269)||(37889272-37889310)
chr7 (232-269)||(37972409-37972447)
chr7 (232-269)||(36527387-36527424)
chr7 (233-269)||(48359671-48359707)
[»] chr5 (15 HSPs)
chr5 (18-228)||(22704861-22705074)
chr5 (232-268)||(37610205-37610241)
chr5 (232-268)||(37780323-37780359)
chr5 (232-269)||(2817588-2817625)
chr5 (232-269)||(22729453-22729490)
chr5 (232-269)||(43463759-43463796)
chr5 (232-269)||(43464205-43464242)
chr5 (232-269)||(2817152-2817190)
chr5 (232-273)||(11316717-11316759)
chr5 (232-269)||(12498570-12498608)
chr5 (232-269)||(12498941-12498979)
chr5 (232-269)||(21207229-21207267)
chr5 (227-269)||(22729006-22729048)
chr5 (232-269)||(26571177-26571215)
chr5 (232-269)||(10098954-10098991)
[»] scaffold0243 (1 HSPs)
scaffold0243 (18-228)||(21697-21921)
[»] chr1 (29 HSPs)
chr1 (232-273)||(49317755-49317796)
chr1 (217-269)||(20371366-20371417)
chr1 (227-269)||(20480625-20480667)
chr1 (227-269)||(27172114-27172156)
chr1 (225-273)||(6703903-6703952)
chr1 (232-273)||(9347560-9347601)
chr1 (232-273)||(4692442-4692484)
chr1 (227-273)||(47498299-47498344)
chr1 (227-269)||(49318179-49318221)
chr1 (227-269)||(50615634-50615676)
chr1 (227-269)||(50623462-50623504)
chr1 (232-269)||(999115-999152)
chr1 (232-269)||(999538-999575)
chr1 (232-269)||(19007738-19007775)
chr1 (232-269)||(20480171-20480208)
chr1 (232-269)||(47498508-47498545)
chr1 (227-269)||(9347124-9347167)
chr1 (227-269)||(48105129-48105172)
chr1 (227-269)||(50430094-50430137)
chr1 (232-269)||(13918880-13918918)
chr1 (232-269)||(32163056-32163094)
chr1 (232-269)||(42611188-42611226)
chr1 (232-269)||(46823846-46823884)
chr1 (232-273)||(46824287-46824329)
chr1 (232-269)||(50526485-50526523)
chr1 (232-269)||(17518615-17518652)
chr1 (232-273)||(20371043-20371083)
chr1 (232-269)||(21687480-21687517)
chr1 (232-267)||(28633723-28633759)
[»] scaffold0069 (2 HSPs)
scaffold0069 (217-269)||(50520-50571)
scaffold0069 (232-273)||(50078-50118)
[»] chr4 (12 HSPs)
chr4 (232-273)||(48405965-48406006)
chr4 (232-273)||(292785-292827)
chr4 (225-269)||(4239379-4239424)
chr4 (232-269)||(26207364-26207401)
chr4 (227-269)||(32703663-32703706)
chr4 (232-269)||(9023247-9023285)
chr4 (232-269)||(9380310-9380348)
chr4 (232-269)||(9380754-9380792)
chr4 (232-269)||(25161881-25161919)
chr4 (232-269)||(28196786-28196824)
chr4 (232-269)||(23539844-23539880)
chr4 (232-269)||(169016-169055)
[»] chr3 (14 HSPs)
chr3 (232-269)||(40848524-40848561)
chr3 (232-269)||(42672981-42673018)
chr3 (227-269)||(3353126-3353168)
chr3 (227-269)||(24485473-24485515)
chr3 (227-269)||(42673309-42673351)
chr3 (227-273)||(44008410-44008456)
chr3 (232-273)||(47666344-47666386)
chr3 (236-269)||(3353564-3353597)
chr3 (227-269)||(27238913-27238956)
chr3 (232-269)||(40848974-40849012)
chr3 (232-269)||(48159900-48159938)
chr3 (227-269)||(53688316-53688358)
chr3 (232-273)||(53766588-53766630)
chr3 (232-267)||(26007634-26007670)
[»] scaffold0460 (1 HSPs)
scaffold0460 (217-269)||(776-827)
[»] chr8 (7 HSPs)
chr8 (227-273)||(16169172-16169218)
chr8 (227-269)||(37397158-37397201)
chr8 (227-268)||(24473341-24473383)
chr8 (232-269)||(25438795-25438833)
chr8 (232-269)||(41662524-41662562)
chr8 (232-269)||(25439139-25439176)
chr8 (226-269)||(34498119-34498163)
[»] chr6 (7 HSPs)
chr6 (227-268)||(22684372-22684413)
chr6 (227-268)||(22754655-22754696)
chr6 (227-269)||(32734009-32734052)
chr6 (232-269)||(3825530-3825567)
chr6 (232-269)||(29074385-29074422)
chr6 (232-269)||(29079149-29079186)
chr6 (232-269)||(29106958-29106995)
[»] scaffold0015 (1 HSPs)
scaffold0015 (225-273)||(17165-17213)
[»] scaffold0017 (1 HSPs)
scaffold0017 (227-269)||(185287-185330)
[»] chr2 (11 HSPs)
chr2 (227-269)||(17850976-17851019)
chr2 (232-270)||(19141447-19141486)
chr2 (227-269)||(26692833-26692876)
chr2 (232-269)||(5378664-5378702)
chr2 (232-269)||(6325360-6325398)
chr2 (232-269)||(8851151-8851189)
chr2 (227-269)||(19141862-19141903)
chr2 (232-269)||(37720207-37720245)
chr2 (232-269)||(16911282-16911319)
chr2 (232-269)||(18750139-18750176)
chr2 (232-269)||(41790494-41790531)
[»] scaffold0041 (1 HSPs)
scaffold0041 (232-269)||(38708-38746)
[»] scaffold0029 (1 HSPs)
scaffold0029 (232-269)||(9908-9946)
[»] scaffold0176 (1 HSPs)
scaffold0176 (232-269)||(19624-19661)
[»] scaffold0110 (1 HSPs)
scaffold0110 (232-269)||(45820-45857)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 5e-90; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 25 - 228
Target Start/End: Original strand, 39867381 - 39867584
Alignment:
Q  25 tgcttaattactttcacgttgctgttctaaatccaaattaattgccattttatgctttaagttccgtattgcttcttttgttttccatcggttatgttcc 124  Q
    ||||||||||||||||||||  ||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  39867381 tgcttaattactttcacgttattgttccaaatccaaattaattgtcgttttatgctttaagttctgtattgcttctttggttttccatcggttatgttcc 39867480  T
Q  125 aattcattccatgttccatattggtgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgtatatgcccattccaattattc 224  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  39867481 aattcattccatgttccatattgatgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgtatatgcccattctaattattc 39867580  T
Q  225 tatt 228  Q
    ||||    
T  39867581 tatt 39867584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 19243647 - 19243422
Alignment:
Q  18 ttattgttgcttaattactttcacgttgctgttctaaatccaaattaattgccattttatgctttaagttccgtattgcttcttttgttttccatcggtt 117  Q
    |||||| |||||||||||||||||||| | |||| |||||||||||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||    
T  19243647 ttattgctgcttaattactttcacgttacggttccaaatccaaattaattgtcgttttatgctttatgttctgtattgcttcttttgttttccatcggtt 19243548  T
Q  118 atgtt--------------ccaattcattccatgttccatattggtgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgt 203  Q
     ||||              ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  19243547 ttgttataattgctggattccaattcattccatgttccatattgatgcaattccatattccattgaaagtcgtgtcatccaattccattgtcgttagtgt 19243448  T
Q  204 ata-tgcccattccaattattctatt 228  Q
    ||| ||||||||||||||||||||||    
T  19243447 atattgcccattccaattattctatt 19243422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 42419079 - 42419042
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42419079 ttaattgcacttttccccctatagtttgccaattgtgc 42419042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 13744283 - 13744246
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||||||| |||||||||    
T  13744283 ttaattgcacttttccccctatagtttgtcaattgtgc 13744246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 18864452 - 18864415
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  18864452 ttaattgtacttttccccctatagtttgccaattgtgc 18864415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 22740641 - 22740604
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||||||| |||||||||    
T  22740641 ttaattgcacttttccccctatagtttgtcaattgtgc 22740604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 48359323 - 48359360
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||||||| |||||||||    
T  48359323 ttaattgcacttttccccctatagtttgtcaattgtgc 48359360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 3204666 - 3204708
Alignment:
Q  226 attgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||    
T  3204666 attggcttaattgcacttt-ccccctatagtttgccaattgtgc 3204708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 37888831 - 37888874
Alignment:
Q  227 ttgggttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  37888831 ttggcttaattgcacttttcccccctatagtttgccaattgtgc 37888874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 9035344 - 9035306
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  9035344 ttaattgcacttttcccccctatagtttgccaattgtgc 9035306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 10533037 - 10533075
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  10533037 ttaattgcacttttcccccctatagtttgccaattgtgc 10533075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 20418891 - 20418929
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  20418891 ttaattgcacttttcccccctatagtttgccaattgtgc 20418929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 29292925 - 29292963
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  29292925 ttaattgcacttttcccccctatagtttgccaattgtgc 29292963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 37889310 - 37889272
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37889310 ttaattgcacttttcccccctatagtttgccaattgtgc 37889272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 37972447 - 37972409
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  37972447 ttaattgcacttttcccccctatagtttgccaattgtgc 37972409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 36527387 - 36527424
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  36527387 ttaattgcactttttcccctatagtttgtcaattgtgc 36527424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 48359707 - 48359671
Alignment:
Q  233 taattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||| |||||||||||| ||||||||||    
T  48359707 taattgcactttttcccctatagtttaccaattgtgc 48359671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 22704861 - 22705074
Alignment:
Q  18 ttattgttgcttaattactttcacgttgctgttctaaatccaaattaattgccattttatgctttaagttccgtattgcttcttttgttttccatcggtt 117  Q
    |||||| |||||||||||||||||||| ||| ||  ||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||    
T  22704861 ttattgctgcttaattactttcacgtttctgctccgaatacaaattaattgtcgttttatgctttaagttctgtattgcttcttttgttttccatcggtt 22704960  T
Q  118 atgttccaattcattccatgttccatattggtgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgtat---atgcccatt 214  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  22704961 atgttccaattcattccatgttccatattgatgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgtatatgatgcccatt 22705060  T
Q  215 ccaattattctatt 228  Q
    ||||||||||||||    
T  22705061 ccaattattctatt 22705074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 37610205 - 37610241
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtg 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  37610205 ttaattgcacttttccccctatagtttgccaattgtg 37610241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 37780323 - 37780359
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtg 268  Q
    |||||||||||||||||||||||||||||||||||||    
T  37780323 ttaattgcacttttccccctatagtttgccaattgtg 37780359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 2817625 - 2817588
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  2817625 ttaattgcacttttccccctatagtttgcgaattgtgc 2817588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 22729490 - 22729453
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  22729490 ttaattgcacttttccccctataatttgccaattgtgc 22729453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 43463759 - 43463796
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| |||||||||||||||||||    
T  43463759 ttaattgcacttttccccttatagtttgccaattgtgc 43463796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 43464242 - 43464205
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||||||| |||||||||    
T  43464242 ttaattgcacttttccccctatagtttgtcaattgtgc 43464205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 2817152 - 2817190
Alignment:
Q  232 ttaattgcacttttcc-ccctatagtttgccaattgtgc 269  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  2817152 ttaattgcacttttcctccctatagtttgccaattgtgc 2817190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 11316717 - 11316759
Alignment:
Q  232 ttaattgcacttttccc-cctatagtttgccaattgtgcaatt 273  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  11316717 ttaattgcacttttccctcctatagtttgccaattgtacaatt 11316759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 12498570 - 12498608
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  12498570 ttaattgcacttttcccccctatagtttgccaattgtgc 12498608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 12498979 - 12498941
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  12498979 ttaattgcacttttcccccctatagtttgccaattgtgc 12498941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 21207229 - 21207267
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  21207229 ttaattgcacttttcccccctatagtttgccaattgtgc 21207267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 22729006 - 22729048
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||||||||||||||||  ||||||||    
T  22729006 ttggcttaattgcacttttccccctatagtttgtaaattgtgc 22729048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 26571215 - 26571177
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  26571215 ttaattgcacttttcccccctatagtttgccaattgtgc 26571177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 10098991 - 10098954
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||| ||||||||||| |||||||||    
T  10098991 ttaattgcacttttcctcctatagtttgtcaattgtgc 10098954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 21697 - 21921
Alignment:
Q  18 ttattgttgcttaattactttcacgttgctgttctaaatccaaattaattgccattttatgctttaagttccgtattgcttcttttgttttccatcggtt 117  Q
    |||||| |||||||||||||||||||| | |||| |||||||||||||||| | |||||||||| |||||| | ||||||||||||||||||||||||||    
T  21697 ttattgctgcttaattactttcacgttacggttccaaatccaaattaattgtcgttttatgcttgaagttctgcattgcttcttttgttttccatcggtt 21796  T
Q  118 atgtt--------------ccaattcattccatgttccatattggtgcaattccatattccattgaaagtcgtgccatccaattccattgccgttagtgt 203  Q
    |||||              || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  21797 atgttataattgctggattcccattcattccatgttccatattgatgcaattccatattccattgaaagtcgtgccatccaattccattgtcgttagtgt 21896  T
Q  204 atatgcccattccaattattctatt 228  Q
    ||||| |||||||||||||||||||    
T  21897 atatgtccattccaattattctatt 21921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 49317755 - 49317796
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49317755 ttaattgcacttttccccctatagtttgccaattgtgcaatt 49317796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 20371417 - 20371366
Alignment:
Q  217 aattattctattgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  20371417 aattattct-ttggcttaattgcacttttccccctatagtttgccaattgtgc 20371366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 20480667 - 20480625
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  20480667 ttggcttaattgcacttttccccctatagtttgccaattgtgc 20480625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 27172114 - 27172156
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  27172114 ttggcttaattgcacttttccccctatagtttgccaattgtgc 27172156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 6703952 - 6703903
Alignment:
Q  225 tattgggttaattgcacttttc-cccctatagtttgccaattgtgcaatt 273  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  6703952 tattggcttaattgcacttttctcccctatagtttgccaattgtgcaatt 6703903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 9347601 - 9347560
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    ||||||||||||| ||||||||||||||||||||||||||||    
T  9347601 ttaattgcactttcccccctatagtttgccaattgtgcaatt 9347560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 4692484 - 4692442
Alignment:
Q  232 ttaattgcactttt-ccccctatagtttgccaattgtgcaatt 273  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  4692484 ttaattgcactttttccccctatagtttgccaattgtgcaatt 4692442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 47498299 - 47498344
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  47498299 ttggcttaattgcacttt-ccccctatagtttgccaattgtgcaatt 47498344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 49318221 - 49318179
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  49318221 ttggcttaattgcactttcccccctatagtttgccaattgtgc 49318179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 50615676 - 50615634
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  50615676 ttggcttaattgcacttttccccctatagtttgtcaattgtgc 50615634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 50623504 - 50623462
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  50623504 ttggcttaattgcacttttccccctatagtttgtcaattgtgc 50623462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 999115 - 999152
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||||||| |||||||||    
T  999115 ttaattgcacttttccccctatagtttgtcaattgtgc 999152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 999575 - 999538
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||| |||||||||||||    
T  999575 ttaattgcacttttccccctatagattgccaattgtgc 999538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 19007738 - 19007775
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  19007738 ttaattgcactttcccccctatagtttgccaattgtgc 19007775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 20480171 - 20480208
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||||||| |||||||||    
T  20480171 ttaattgcacttttccccctatagtttgtcaattgtgc 20480208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 47498545 - 47498508
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||||||||||||||||| |||||||||    
T  47498545 ttaattgcacttttccccctatagtttgtcaattgtgc 47498508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 9347124 - 9347167
Alignment:
Q  227 ttgggttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  9347124 ttggcttaattgcacttttcccccctatagtttgccaattgtgc 9347167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 48105172 - 48105129
Alignment:
Q  227 ttgggttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  48105172 ttggcttaattgcacttttcccccttatagtttgccaattgtgc 48105129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 50430137 - 50430094
Alignment:
Q  227 ttgggttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  50430137 ttggtttaattgcacttttcccccctatagtttgccaattgtgc 50430094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 13918918 - 13918880
Alignment:
Q  232 ttaattgcacttttcc-ccctatagtttgccaattgtgc 269  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  13918918 ttaattgcacttttcctccctatagtttgccaattgtgc 13918880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 32163094 - 32163056
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  32163094 ttaattgcacttttcccccctatagtttgccaattgtgc 32163056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 42611188 - 42611226
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  42611188 ttaattgcacttttcccccttatagtttgccaattgtgc 42611226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 46823846 - 46823884
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  46823846 ttaattgcacttttcccccctatagtttgccaattgtgc 46823884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 46824329 - 46824287
Alignment:
Q  232 ttaattgcacttttccc-cctatagtttgccaattgtgcaatt 273  Q
    |||||||||||||| || |||||||||||||||||||||||||    
T  46824329 ttaattgcactttttcctcctatagtttgccaattgtgcaatt 46824287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 50526523 - 50526485
Alignment:
Q  232 ttaattgcactttt-ccccctatagtttgccaattgtgc 269  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  50526523 ttaattgcactttttccccctatagtttgccaattgtgc 50526485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 17518652 - 17518615
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  17518652 ttaattgcacttttccccctatcttttgccaattgtgc 17518615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 20371043 - 20371083
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  20371043 ttaattgcacttt-ccccctatagtttgtcaattgtgcaatt 20371083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 21687517 - 21687480
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  21687517 ttaatagcacttttccccctataatttgccaattgtgc 21687480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 28633723 - 28633759
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgt 267  Q
    ||||||||||||||||||| |||||||||||||||||    
T  28633723 ttaattgcacttttcccccttatagtttgccaattgt 28633759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 50571 - 50520
Alignment:
Q  217 aattattctattgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  50571 aattattct-ttggcttaattgcacttttccccctatagtttgccaattgtgc 50520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 50078 - 50118
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    ||||||||||||| |||||||||||||| |||||||||||||    
T  50078 ttaattgcacttt-ccccctatagtttgtcaattgtgcaatt 50118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 48405965 - 48406006
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  48405965 ttaattgcacttttccccctatagtttgccaattatgcaatt 48406006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 292785 - 292827
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgcaatt 273  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  292785 ttaattgcacttttcccccctatagtttgccaattgtgcaatt 292827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 4239424 - 4239379
Alignment:
Q  225 tattgggttaattgcactttt-ccccctatagtttgccaattgtgc 269  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  4239424 tattggcttaattgcactttttccccctatagtttgccaattgtgc 4239379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 26207364 - 26207401
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  26207364 ttaattgcactttcccccctatagtttgccaattgtgc 26207401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 32703706 - 32703663
Alignment:
Q  227 ttgggttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  32703706 ttggcttaattgcacttttcccccctatagtttgccaattgtgc 32703663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 9023247 - 9023285
Alignment:
Q  232 ttaattgcacttttc-cccctatagtttgccaattgtgc 269  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  9023247 ttaattgcacttttctcccctatagtttgccaattgtgc 9023285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 9380310 - 9380348
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  9380310 ttaattgcacttttcccccctatagtttgccaattgtgc 9380348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 9380792 - 9380754
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  9380792 ttaattgcacttttcccccctatagtttgccaattgtgc 9380754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 25161881 - 25161919
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25161881 ttaattgcacttttcccccctatagtttgccaattgtgc 25161919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 28196824 - 28196786
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  28196824 ttaattgcacttttcccccctatagtttgccaattgtgc 28196786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 23539844 - 23539880
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  23539844 ttaattgcacttt-ccccctatagtttgccaattgtgc 23539880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 169016 - 169055
Alignment:
Q  232 ttaattgcacttttc--cccctatagtttgccaattgtgc 269  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  169016 ttaattgcacttttctccccctatagtttgccaattgtgc 169055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 40848524 - 40848561
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40848524 ttaattgcacttttccccctatagtttgccaattgtgc 40848561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 42672981 - 42673018
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42672981 ttaattgcacttttccccctatagtttgccaattgtgc 42673018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 3353126 - 3353168
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  3353126 ttggcttaattgcacttttccccctatagtttgtcaattgtgc 3353168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 24485515 - 24485473
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||| ||||||||||||||||||||||    
T  24485515 ttggcttaattgcacttttctccctatagtttgccaattgtgc 24485473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 42673351 - 42673309
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||||||||||||| |||||||||    
T  42673351 ttggcttaattgcacttttccccctatagtttgtcaattgtgc 42673309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 44008456 - 44008410
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||    
T  44008456 ttggcttaattgcacttttcatcctatagtttgccaattgtgcaatt 44008410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 47666386 - 47666344
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgcaatt 273  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  47666386 ttaattgcacttttcccccctatagtttgccaattgtgcaatt 47666344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 3353597 - 3353564
Alignment:
Q  236 ttgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||||||||||||||    
T  3353597 ttgcacttttccccctatagtttgccaattgtgc 3353564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 27238956 - 27238913
Alignment:
Q  227 ttgggttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  27238956 ttggtttaattgcacttttcccctctatagtttgccaattgtgc 27238913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 40849012 - 40848974
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  40849012 ttaattgcacttttcccctctatagtttgccaattgtgc 40848974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 48159900 - 48159938
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  48159900 ttaattgcacttttcccccctatagtttgccaattgtgc 48159938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 53688358 - 53688316
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||  |||||||||||||||||||||||    
T  53688358 ttggcttaattgcactttctcccctatagtttgccaattgtgc 53688316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 273
Target Start/End: Complemental strand, 53766630 - 53766588
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgcaatt 273  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  53766630 ttaattgcacttttcccccctatagtttgcaaattgtgcaatt 53766588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 26007670 - 26007634
Alignment:
Q  232 ttaattgcactttt-ccccctatagtttgccaattgt 267  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26007670 ttaattgcactttttccccctatagtttgccaattgt 26007634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0460 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 217 - 269
Target Start/End: Complemental strand, 827 - 776
Alignment:
Q  217 aattattctattgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||| |||| |||||||||||||| |||||||||||||||||||||||    
T  827 aattattct-ttggcttaattgcactttttcccctatagtttgccaattgtgc 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 16169172 - 16169218
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    |||| |||||||||||||||  |||||||||||||||||||||||||    
T  16169172 ttggcttaattgcacttttcatcctatagtttgccaattgtgcaatt 16169218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 37397201 - 37397158
Alignment:
Q  227 ttgggttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    |||| ||||||||||||||||||| |||||||||||||||||||    
T  37397201 ttggcttaattgcacttttcccccctatagtttgccaattgtgc 37397158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 24473341 - 24473383
Alignment:
Q  227 ttgggttaattgcactttt-ccccctatagtttgccaattgtg 268  Q
    |||| |||||||||||||| |||||||||||||||||||||||    
T  24473341 ttggcttaattgcactttttccccctatagtttgccaattgtg 24473383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 25438795 - 25438833
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25438795 ttaattgcacttttcccccctatagtttgccaattgtgc 25438833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 41662524 - 41662562
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  41662524 ttaattgcacttttcccccatatagtttgccaattgtgc 41662562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 25439176 - 25439139
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||| ||||||||||||| |||||||||    
T  25439176 ttaattgcactttttcccctatagtttgtcaattgtgc 25439139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 34498119 - 34498163
Alignment:
Q  226 attgggttaattgcactttt-ccccctatagtttgccaattgtgc 269  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||    
T  34498119 attggtttaattgcactttttccccctatagtttgtcaattgtgc 34498163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 22684413 - 22684372
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtg 268  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  22684413 ttggcttaattgcacttttccccttatagtttgccaattgtg 22684372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 22754655 - 22754696
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtg 268  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  22754655 ttggcttaattgcacttttccccttatagtttgccaattgtg 22754696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 32734052 - 32734009
Alignment:
Q  227 ttgggttaattgcacttttcc-ccctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  32734052 ttggtttaattgcacttttcctccctatagtttgccaattgtgc 32734009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 3825530 - 3825567
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  3825530 ttaattgcacttttccccctatattttgctaattgtgc 3825567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 29074422 - 29074385
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  29074422 ttaattgctctttcccccctatagtttgccaattgtgc 29074385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 29079186 - 29079149
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  29079186 ttaattgctctttcccccctatagtttgccaattgtgc 29079149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 29106995 - 29106958
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||| |||| ||||||||||||||||||||||||    
T  29106995 ttaattgctctttcccccctatagtttgccaattgtgc 29106958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 17213 - 17165
Alignment:
Q  225 tattgggttaattgcacttttccccctatagtttgccaattgtgcaatt 273  Q
    |||||| ||||||||||||||||||||||  ||||| ||||||||||||    
T  17213 tattggcttaattgcacttttccccctatcttttgctaattgtgcaatt 17165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 185330 - 185287
Alignment:
Q  227 ttgggttaattgcacttttcc-ccctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||| ||||||||||||||||||||||    
T  185330 ttggcttaattgcacttttcctccctatagtttgccaattgtgc 185287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 17850976 - 17851019
Alignment:
Q  227 ttgggttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  17850976 ttggcttaattgcacttttcccccctatagtttgccaattgtgc 17851019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 19141447 - 19141486
Alignment:
Q  232 ttaattgcactttt-ccccctatagtttgccaattgtgca 270  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  19141447 ttaattgcactttttccccctatagtttgccaattgtgca 19141486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 26692876 - 26692833
Alignment:
Q  227 ttgggttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||| |||||||||||||||||| ||||||||||||||||||||    
T  26692876 ttggtttaattgcacttttcccctctatagtttgccaattgtgc 26692833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 5378664 - 5378702
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  5378664 ttaattgcacttttcccccctatagtttgccaattgtgc 5378702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 6325398 - 6325360
Alignment:
Q  232 ttaattgcacttttccccc-tatagtttgccaattgtgc 269  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  6325398 ttaattgcacttttcccccatatagtttgccaattgtgc 6325360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 8851151 - 8851189
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  8851151 ttaattgcacttttcccccctatagtttgccaattgtgc 8851189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 19141903 - 19141862
Alignment:
Q  227 ttgggttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  19141903 ttggtttaattgcacttt-ccccctatagtttgccaattgtgc 19141862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 37720207 - 37720245
Alignment:
Q  232 ttaattgcacttttcccc-ctatagtttgccaattgtgc 269  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  37720207 ttaattgcacttttcccccctatagtttgccaattgtgc 37720245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 16911319 - 16911282
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||||  |||||||||||||||||||||||    
T  16911319 ttaattgcactttcgcccctatagtttgccaattgtgc 16911282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 18750176 - 18750139
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  18750176 ttaattgcacttctccccctatagtttgtcaattgtgc 18750139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 41790494 - 41790531
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  41790494 ttaattgcatttttccccctatagtttgtcaattgtgc 41790531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 38746 - 38708
Alignment:
Q  232 ttaattgcactttt-ccccctatagtttgccaattgtgc 269  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  38746 ttaattgcactttttccccctatagtttgccaattgtgc 38708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 9908 - 9946
Alignment:
Q  232 ttaattgcactttt-ccccctatagtttgccaattgtgc 269  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9908 ttaattgcactttttccccctatagtttgccaattgtgc 9946  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 19624 - 19661
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  19624 ttaattgcaattttccccatatagtttgccaattgtgc 19661  T

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Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 45857 - 45820
Alignment:
Q  232 ttaattgcacttttccccctatagtttgccaattgtgc 269  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  45857 ttaattgcacttttccccctatcttttgccaattgtgc 45820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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