View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12193_high_3 (Length: 437)
Name: NF12193_high_3
Description: NF12193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12193_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 33859265 - 33859670
Alignment:
| Q |
14 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaagtacgcatttagtcattttcatgacacaagtttttcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33859265 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaagtacgcatttagtcattttcatgacacaagtttttcc |
33859364 |
T |
|
| Q |
114 |
tcttaactttcaagttcgacaaaagttctcaaagcttaacaactttccttgttctttccccaggtacacatacaggttagggcatttcttatctgatggc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33859365 |
tcttaactttcaagttcgacaaaagttctcaaagcttaacagctttccttgttctttccccaggtacacatacaggttagggcatttcttatctgatggc |
33859464 |
T |
|
| Q |
214 |
tcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggtag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33859465 |
tcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggtag |
33859564 |
T |
|
| Q |
314 |
tactgattagacgtgtctaacttttgaattagaaactctaattttaagcatgagtagtacgatgtgaagaaggctcactttgcttcgcgtgttctttagg |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33859565 |
tactgattagacgtgtctaacttttgaattagaaactctaattttaagcatgagtagtacgatgtgaagaaggcttactttgcttcgcgtgttctttagg |
33859664 |
T |
|
| Q |
414 |
ctgagc |
419 |
Q |
| |
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|||||| |
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|
| T |
33859665 |
ctgagc |
33859670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 313
Target Start/End: Original strand, 33869588 - 33869887
Alignment:
| Q |
14 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaagtacgcatttagtcattttcatgacacaagtttttcc |
113 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||| | |
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| T |
33869588 |
tggctggcgcgatcctggttttatacacacaagtttccttaaagaactttggccaaatatgaggtatgcattcagtcattttcatgacgcaagttttttc |
33869687 |
T |
|
| Q |
114 |
tcttaactttcaagttcgacaaaagttctcaaagcttaacaactttccttgttctttccccaggtacacatacaggttagggcatttcttatctgatggc |
213 |
Q |
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|||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| | ||||| || |
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| T |
33869688 |
gcttaactttccagttcgacaaaagttcacaaagcttagcaatcttccttgttctttccccaggtacacctacaggttagggcatttcatgtctgacggt |
33869787 |
T |
|
| Q |
214 |
tcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggtag |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||||| |
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| T |
33869788 |
tcttatgtatggagtaagaggtattcattcaaggcatctccatatcctggacaaaactcgttgcaacgcgttataatatttggtgacatgggaaaggtag |
33869887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 174 - 313
Target Start/End: Original strand, 33874223 - 33874362
Alignment:
| Q |
174 |
caggtacacatacaggttagggcatttcttatctgatggctcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactca |
273 |
Q |
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|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33874223 |
caggtacacctacaggttagggcatttcttatctgatggttcttatgtatggagtaagaggtattcattcaaggcatctccgtatcctggacagaactca |
33874322 |
T |
|
| Q |
274 |
ttgcaacgtgttatcatatttggtgacatgggaaaggtag |
313 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
33874323 |
ttgcaacgtgttatcatattcggtgacatgggaaaggtag |
33874362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 329 - 419
Target Start/End: Original strand, 33869932 - 33870022
Alignment:
| Q |
329 |
tctaacttttgaattagaaactctaattttaagcatgagtagtacgatgtgaagaaggctcactttgcttcgcgtgttctttaggctgagc |
419 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||| ||||||||| |||||||||||||||||||| |
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| T |
33869932 |
tctaacttttgaataagaaactctaattttaagcatgaatagtacaatgggaagaaggcttactttgctttgcgtgttctttaggctgagc |
33870022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 33874076 - 33874137
Alignment:
| Q |
14 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatga |
75 |
Q |
| |
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| T |
33874076 |
tggctggcgtgatcctggttttatacatacaagttttcttaaagaactttggccaaatatga |
33874137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 275239 - 275178
Alignment:
| Q |
14 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatga |
75 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
275239 |
tggctggcgtgatcctggttttatacatacaagtttccttaaagaactttggccaaatatga |
275178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 872970 - 873031
Alignment:
| Q |
14 |
tggctggcgtgatcctggttttatacacacaagtttccttaaagaactttggccaaatatga |
75 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
872970 |
tggctggcgtgatcctggttttatacatacaagtttccttaaagaactttggccaaatatga |
873031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 312
Target Start/End: Original strand, 42783116 - 42783193
Alignment:
| Q |
235 |
tattcattcaaggcatctccgtatcctggacagaactcattgcaacgtgttatcatatttggtgacatgggaaaggta |
312 |
Q |
| |
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|||||||| ||| |||| || |||||||||||| ||||| ||||||||||| ||||||||||||||||||| |||||| |
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| T |
42783116 |
tattcatttaagtcatcgccttatcctggacaggactcactgcaacgtgttgtcatatttggtgacatggggaaggta |
42783193 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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