View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12193_high_6 (Length: 262)
Name: NF12193_high_6
Description: NF12193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12193_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 3349521 - 3349283
Alignment:
| Q |
14 |
tgtgctcttcacaaagtcatcaagggacaccatgttctacattgctaaccgtcggaaaagttttcttaacaagtatac---cttatactttattttattt |
110 |
Q |
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| T |
3349521 |
tgtgctcttcacaaagtcatcaagggacaccatgtcctacattgctaaccgtcggaaaagttttcttaacaagtatatatacttatactttattttattt |
3349422 |
T |
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| Q |
111 |
tt--gagggaaagtataattgtatttatttaatacatttcataaaacaatctcattgcatgtgtagggaggaagttgtgggggattttgattggtaccct |
208 |
Q |
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|| ||||||||||||| || ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3349421 |
ttttgagggaaagtatacttacatttatttaatgcattacataaaacaatttcattgcatgtgtagggaggaagttgttggggattttgattggtaccct |
3349322 |
T |
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| Q |
209 |
ccattaatgtcataccttgaagctttacctccatcatat |
247 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
3349321 |
ccattaatgtcataccttgaagctttgcctccatcatat |
3349283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 14 - 247
Target Start/End: Complemental strand, 3374926 - 3374688
Alignment:
| Q |
14 |
tgtgctcttcacaaagtcatcaagggacaccatgttctacattgctaaccgtcggaaaagttttcttaacaagtatac---cttatactttattttattt |
110 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3374926 |
tgtgctcttcacaaagtcatcaagggacaccatgtcctacattgctaaccgtcggaaaagttttcttaacaagtatatatacttatactttattttattt |
3374827 |
T |
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| Q |
111 |
tt--gagggaaagtataattgtatttatttaatacatttcataaaacaatctcattgcatgtgtagggaggaagttgtgggggattttgattggtaccct |
208 |
Q |
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|| ||||||||||||| || ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3374826 |
ttttgagggaaagtatacttacatttatttaatgcattacataaaacaatttcattgcatgtgtagggaggaagttgttggggattttgattggtaccct |
3374727 |
T |
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| Q |
209 |
ccattaatgtcataccttgaagctttacctccatcatat |
247 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |
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| T |
3374726 |
ccattaatgtcataccttgaagctttgcctccatcatat |
3374688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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