View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12193_low_2 (Length: 512)
Name: NF12193_low_2
Description: NF12193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12193_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 268 - 498
Target Start/End: Complemental strand, 31633245 - 31633015
Alignment:
| Q |
268 |
catgagaaaatagactcttgaagggaacaattgtattgtattttcgaaaacaataaaaacaacaactattttcattattttcaaacatgtttcatcccta |
367 |
Q |
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| T |
31633245 |
catgagaaaatagactcttgaagggaacaattgtattgtattttcgaaaacaataaaaacaacaactattttcattattttcaaacatgtttcatcccta |
31633146 |
T |
|
| Q |
368 |
actaacatttttgtcttatctccatcacaatgattcaatcaaaagtctcaaatcttcttattagcaagttaaaataaacatttgttctaagaaataaaaa |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31633145 |
actaacatttttgtcttatctccatcacaatgattcaatcaaaagtctcaaatcttcttattagcaagttaaaataaacatttgttctaagaaataaaaa |
31633046 |
T |
|
| Q |
468 |
ctaaatgtgttttaacaaaataaacatacac |
498 |
Q |
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||||||||||||||||||| ||||||||||| |
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| T |
31633045 |
ctaaatgtgttttaacaaagtaaacatacac |
31633015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 31633494 - 31633307
Alignment:
| Q |
19 |
ctatactacaatgaaagtctaataaagtacttataatgctttgcatatataaccaatctgtcaagtttgaagtgtgaacataagaaagactaaactcttg |
118 |
Q |
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| T |
31633494 |
ctatactacaatgaaagtctaataaagtacttataatgctttgcatatataaccaatctgtcaagtttgaagtgtgaacataagaaagaataaactcttg |
31633395 |
T |
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| Q |
119 |
taattgttcacaatttagctaattcagctcaattattcagatattggagcattgttaatcaattgatacactttgataatatgggcat |
206 |
Q |
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| T |
31633394 |
taattgttcacaatttagctaattcagctcaattattcagatattggagcattgttaatcaattgatacacttggataatatgggcat |
31633307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 445
Target Start/End: Original strand, 31686889 - 31686925
Alignment:
| Q |
409 |
aaagtctcaaatcttcttattagcaagttaaaataaa |
445 |
Q |
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| T |
31686889 |
aaagtctcccatcttcttattagcaagttaaaataaa |
31686925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 447
Target Start/End: Original strand, 48440021 - 48440081
Alignment:
| Q |
388 |
tccatcacaatgattcaat-caaaagtctcaaatcttcttattagcaagttaaaataaaca |
447 |
Q |
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| T |
48440021 |
tccatcacaatgattcgcttcaaaagtctcatatcttcttattagcaagttaaaatgaaca |
48440081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 39963180 - 39963224
Alignment:
| Q |
334 |
tattttcattattttcaaacatgtttcatccctaactaacatttt |
378 |
Q |
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| T |
39963180 |
tattttcgttattttcaaaaatgattcatccctaactaacatttt |
39963224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 442
Target Start/End: Original strand, 39681899 - 39682009
Alignment:
| Q |
332 |
actattttcattattttcaaacatgtttcatccctaactaacatttttgtcttatctccatcacaatgattcaatcaaa-agtctcaaatcttcttatta |
430 |
Q |
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|||||| |||||||||||||| ||| ||||| |||||| ||||| |||| |||||||||||||| |||| | || |||||| |||||||||||| |
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| T |
39681899 |
actattctcattattttcaaaaatgcatcatctataactagcatttca-tcttctctccatcacaatggttcattttaagagtctcgcatcttcttatta |
39681997 |
T |
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| Q |
431 |
gcaagttaaaat |
442 |
Q |
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| T |
39681998 |
gcaagttaaaat |
39682009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 447
Target Start/End: Original strand, 40688299 - 40688340
Alignment:
| Q |
406 |
tcaaaagtctcaaatcttcttattagcaagttaaaataaaca |
447 |
Q |
| |
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|||| ||||||| ||||||||||||||||||| ||||||||| |
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| T |
40688299 |
tcaagagtctcacatcttcttattagcaagttgaaataaaca |
40688340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 28805222 - 28805162
Alignment:
| Q |
381 |
tcttatctccatcacaatgattcaatcaaa-agtctcaaatcttcttattagcaagttaaa |
440 |
Q |
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||||||||||||||||||| ||| || || ||||||| || ||||||||||||||||||| |
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| T |
28805222 |
tcttatctccatcacaatggttcgctctaagagtctcacatattcttattagcaagttaaa |
28805162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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