View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12193_low_3 (Length: 489)
Name: NF12193_low_3
Description: NF12193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12193_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 8005387 - 8005857
Alignment:
| Q |
1 |
tatgtgatatattatctgaagtgtattgggtagttgtcactgatttggcttagttataagttaatgaattgactagtttatattgatattgggatgtaat |
100 |
Q |
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| T |
8005387 |
tatgtgatatattatctgaagtgtattgggtagttgtcactgatttggcttagttataagttaatgaattgactagtttctattgatattgggatgtaat |
8005486 |
T |
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| Q |
101 |
tctaattaattttcattgagatgagatgattagagtatccacaacctaccttacgggtatgggagagattgctcccc-caatgatttcacgtgtattttt |
199 |
Q |
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| T |
8005487 |
tctaattaattttcattgagatgagatgattagagtatccacaacctaccttacgggtatgggagagattgctccccccaatgatttcaagtgtattttt |
8005586 |
T |
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| Q |
200 |
gtgggttaaaggggtcattcatataagaaaccccaaaatctcttttccaattgctgttgatggtggtttcatacccgtcatatccccctataaggatgag |
299 |
Q |
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| T |
8005587 |
gtgggttaaaggggtcattcatataagaaaccccaaaatctcttttccaattgctgttgatggtggtttcatacccgtcatatccccctataaggatgag |
8005686 |
T |
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| Q |
300 |
gttgggacgtgattagttttgcttgtccttgcttgaccagacaacacatttcctataaggcataatgaagaagaaggtagctttctattccnnnnnnnnn |
399 |
Q |
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| T |
8005687 |
gttgggacgtgattagttttgcttgtccttgcttgaccaaacaacacatttcctataaggcataatgaagaagaaggtagctttctattccttttttttg |
8005786 |
T |
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| Q |
400 |
nnnnnnnnngaatgtatgtatctaagcttttagcatagttgaatagaaacacttggattttgggagaattc |
470 |
Q |
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| T |
8005787 |
tttctttttgaatgtatgtatctaagcttttagcatagttgaatagaaacacttggattttgggagaattc |
8005857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 296 - 390
Target Start/End: Original strand, 7963306 - 7963396
Alignment:
| Q |
296 |
tgaggttgggacgtgattagttttgcttgtccttgcttgaccagacaacacatttcctataaggcataatgaagaagaaggtagctttctattcc |
390 |
Q |
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| T |
7963306 |
tgaggttgggacgtgattagttttgcttgtccttgat----cagacaacacatttcctataaggcataatgaagaagaaggtagctttctattcc |
7963396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 6909754 - 6909835
Alignment:
| Q |
68 |
attgactagtttatattgatattgggatgtaattctaattaattttcattgagatgagatgattagagtatccacaacctaccttac |
154 |
Q |
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| T |
6909754 |
attgactagtttctagtgatattgggatgtagttctaattaattctca-----gtgagatgatcagagtatccacaacctaccttac |
6909835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 7963414 - 7963452
Alignment:
| Q |
409 |
gaatgtatgtatctaagcttttagcatagttgaatagaa |
447 |
Q |
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| T |
7963414 |
gaatgtatgtatctaagcttttagcatagttgaatagaa |
7963452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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