View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12193_low_5 (Length: 403)
Name: NF12193_low_5
Description: NF12193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12193_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 3 - 385
Target Start/End: Original strand, 16685966 - 16686348
Alignment:
| Q |
3 |
gaacctgtgctttaagaagcatagggatcaaagtgatgagggttatggtagttgcacatgaaaccaatgcagtgaggactttcaagacagtaagtgtcag |
102 |
Q |
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| T |
16685966 |
gaacctttactttaagaagcatagggatcaaagtgatgagggttatggtagttgcacatgaaaccaatgcagtgaggactttcaagacagtaagtgtcag |
16686065 |
T |
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| Q |
103 |
catgatttgaaatgtgtggggtccataagtccagctattaaacaaatgtgtcattccacaaagtacaatgaaagcaatgaactgaaaaagtacccatttg |
202 |
Q |
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| T |
16686066 |
catgatttgaaatgtgtggggtccataagtccagctattaaacaaatgtgtcattccacaaagtacaatgaaagcaatgaactgaaaaagtacccatttg |
16686165 |
T |
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| Q |
203 |
aatggaatgtttgcacaactgatgaaataaagaagctcaatagggatcgagaagtatgccaccgcgatcagaaaatcaccgactttctgccattctagaa |
302 |
Q |
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| T |
16686166 |
aatggaatgtttgcacaactgatgaaataaagaagctcaatagggatcgagaagtatgccaccgcgatcagaaaatcaccgactttctgccattctagaa |
16686265 |
T |
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| Q |
303 |
tcttctcaatcgtccaccagctcgtgtcatcgtcacagttgcatttagaaaatccattaacagttgctgatacacccaacaag |
385 |
Q |
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| T |
16686266 |
tcttctcaatcgtccaccagctcgtgtcatcgtcacagttgcatttagaaaatccattaacagttgctgatacacccaacaag |
16686348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 32789116 - 32788846
Alignment:
| Q |
12 |
ctttaagaagcatagggatcaaagtgatgagggttatggtagttgcacatgaaaccaatgcagtgaggactttcaagacagtaagtgtcagcatgatttg |
111 |
Q |
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|||| ||||||| ||| |||||||||| || ||||| | ||||||||| || ||||| || ||||| | || |||| ||||||| || ||| | || |
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| T |
32789116 |
ctttgagaagcaaaggaatcaaagtgacaagtgttatcgcagttgcacaagacaccaaggcggtgagaatcttaaagatggtaagtgccaccataagctg |
32789017 |
T |
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| Q |
112 |
aaatgtgtggggtccataagtccagctattaaacaaatgtgtcattccacaaagtacaatgaaagcaatgaactgaaaaagtacccatttgaatggaatg |
211 |
Q |
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||| ||||| || ||||||||||| | ||| || |||||||||| |||||| ||||| || |||||||||||||||| ||| ||||||||||| || | | |
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| T |
32789016 |
aaaagtgtgaggaccataagtccaaccattcaaaaaatgtgtcaatccacatagtactataaaagcaatgaactgaacaaggacccatttgaaagggacg |
32788917 |
T |
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| Q |
212 |
tttgcacaactgatgaaataaagaagctcaatagggatcgagaagtatgccaccgcgatcagaaaatcacc |
282 |
Q |
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| T |
32788916 |
ttcgagcaactgacaaaataaagcagctcaagagggattgagaagtaggccacagcaatcaagaaatcacc |
32788846 |
T |
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