View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12193_low_7 (Length: 284)
Name: NF12193_low_7
Description: NF12193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12193_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 155 - 269
Target Start/End: Complemental strand, 29829550 - 29829436
Alignment:
| Q |
155 |
actatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttctatacgaattgatt |
254 |
Q |
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| T |
29829550 |
actatttttctcttttacaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttttatacgaattgatt |
29829451 |
T |
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| Q |
255 |
ttatctttgaacctg |
269 |
Q |
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| T |
29829450 |
tcatctttgaacctg |
29829436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 29841922 - 29842023
Alignment:
| Q |
155 |
actatttttctctttt-acaaggaaggatcagtgaattgaatatcctccaagctacttttgtgattgagtacattgattccgctttctatacgaattgat |
253 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
29841922 |
actatttttctctttttacaaggaaggatcggtgaattgaatatcctccaagctacttttgtgattgagtacatggattccgctttttatacgaattgat |
29842021 |
T |
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| Q |
254 |
tt |
255 |
Q |
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| T |
29842022 |
tt |
29842023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 29829693 - 29829579
Alignment:
| Q |
13 |
acctgtgcattggggtgaaacaagtataatacaagcacaaagtgtgtagnnnnnnnn-cctatgtattttcaccaagagttggttttgtgggtgaatgga |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29829693 |
acctgtgcattggggtgaaacaagtataatacaagcacaaagtgtgtggaaaaaaaaacctatgtattttcaccaagagttggttttgtggttgaatgga |
29829594 |
T |
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| Q |
112 |
atatgcagaatgttg |
126 |
Q |
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|||| |||||||||| |
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| T |
29829593 |
atattcagaatgttg |
29829579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 126
Target Start/End: Original strand, 29841809 - 29841905
Alignment:
| Q |
29 |
gaaacaagtataatacaagcacaaagtgtgtagnnnnnnnncctatgtattttcaccaagagttggttttgtgggtgaatggaatatgcagaatgttg |
126 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||| |||||| ||||| | |||||||| |
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| T |
29841809 |
gaaacaagtataatacaagcacaaagtgtgta-aagaaaaacctatgtattttcacgaagaggtggttttgtgattgaatgaaatattcggaatgttg |
29841905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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