View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12193_low_9 (Length: 236)

Name: NF12193_low_9
Description: NF12193
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12193_low_9
NF12193_low_9
[»] scaffold0024 (1 HSPs)
scaffold0024 (10-224)||(18883-19097)
[»] chr8 (10 HSPs)
chr8 (106-169)||(12611716-12611779)
chr8 (106-171)||(39651026-39651091)
chr8 (95-171)||(30198264-30198340)
chr8 (131-170)||(12692239-12692278)
chr8 (105-164)||(26055639-26055698)
chr8 (117-171)||(41031418-41031472)
chr8 (117-171)||(41031524-41031578)
chr8 (95-169)||(45419443-45419517)
chr8 (107-171)||(11523721-11523785)
chr8 (107-171)||(14742080-14742144)
[»] chr4 (14 HSPs)
chr4 (89-171)||(45209203-45209285)
chr4 (117-171)||(33227439-33227493)
chr4 (98-171)||(44719359-44719432)
chr4 (107-171)||(19061933-19061997)
chr4 (96-164)||(37042669-37042737)
chr4 (117-171)||(1328612-1328666)
chr4 (117-171)||(6957828-6957882)
chr4 (141-171)||(33190846-33190876)
chr4 (107-171)||(21528508-21528572)
chr4 (95-171)||(28236390-28236466)
chr4 (107-171)||(35555648-35555712)
chr4 (107-171)||(50238613-50238677)
chr4 (107-171)||(50238699-50238763)
chr4 (107-171)||(52569513-52569577)
[»] chr2 (11 HSPs)
chr2 (43-131)||(2906031-2906119)
chr2 (95-171)||(8197539-8197615)
chr2 (95-171)||(8202299-8202375)
chr2 (96-170)||(28960210-28960284)
chr2 (114-171)||(15025721-15025778)
chr2 (107-171)||(227409-227473)
chr2 (107-171)||(3635321-3635385)
chr2 (107-171)||(4807815-4807879)
chr2 (95-171)||(6219173-6219249)
chr2 (107-171)||(17670688-17670752)
chr2 (107-171)||(30306252-30306316)
[»] chr1 (12 HSPs)
chr1 (104-171)||(52814292-52814359)
chr1 (105-171)||(37430418-37430484)
chr1 (95-167)||(2545101-2545173)
chr1 (95-170)||(30396728-30396803)
chr1 (107-169)||(43028808-43028870)
chr1 (107-171)||(1210965-1211029)
chr1 (108-172)||(6025826-6025890)
chr1 (107-171)||(25979229-25979293)
chr1 (107-171)||(29577472-29577536)
chr1 (107-171)||(30202128-30202192)
chr1 (103-171)||(41165498-41165566)
chr1 (95-171)||(41560437-41560513)
[»] chr7 (12 HSPs)
chr7 (98-171)||(45840994-45841067)
chr7 (107-171)||(37618165-37618229)
chr7 (142-171)||(476030-476059)
chr7 (117-170)||(33073159-33073212)
chr7 (107-171)||(2885720-2885784)
chr7 (107-171)||(11594180-11594244)
chr7 (107-171)||(12841273-12841337)
chr7 (107-171)||(28208326-28208390)
chr7 (111-171)||(31005429-31005489)
chr7 (107-171)||(31682600-31682664)
chr7 (107-171)||(38607212-38607276)
chr7 (107-171)||(39906370-39906434)
[»] chr6 (2 HSPs)
chr6 (107-171)||(28085596-28085660)
chr6 (142-171)||(4245870-4245899)
[»] chr5 (5 HSPs)
chr5 (107-171)||(30213795-30213859)
chr5 (95-171)||(36123180-36123256)
chr5 (98-171)||(408492-408565)
chr5 (95-163)||(14667979-14668047)
chr5 (107-171)||(29816602-29816666)
[»] chr3 (8 HSPs)
chr3 (105-164)||(45468793-45468852)
chr3 (95-158)||(53951963-53952026)
chr3 (107-169)||(31566161-31566223)
chr3 (95-172)||(19676078-19676155)
chr3 (142-171)||(31260965-31260994)
chr3 (107-171)||(5169052-5169116)
chr3 (117-169)||(7120813-7120865)
chr3 (107-171)||(12096703-12096767)
[»] scaffold0168 (1 HSPs)
scaffold0168 (107-171)||(28887-28951)
[»] scaffold0022 (1 HSPs)
scaffold0022 (107-171)||(99284-99348)


Alignment Details
Target: scaffold0024 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 19097 - 18883
Alignment:
Q  10 agaagcagagaaagaccaaaaagaaatatagacgaaactataaagaacaacctagagatcaatggttggtatagagatgttattcatgatagagtattat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19097 agaagcagagaaagaccaaaaagaaatatagacgaaactataaagaacaacctagagatcaatggttggtatagagatgttattcatgatagagtattat 18998  T
Q  110 ggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttggcattttaaacaacctcacctcgaatattcagattaaa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||    
T  18997 ggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgttttcgttggcgttttaaacaacctcacctcgaatattaagattaaa 18898  T
Q  210 cccatcataactgca 224  Q
    |||||||||||||||    
T  18897 cccatcataactgca 18883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 12611716 - 12611779
Alignment:
Q  106 ttatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgt 169  Q
    ||||||||||||||||||||| || ||||| |||| ||||||||||||||||||||||| ||||    
T  12611716 ttatggtgtcgtttgatccatgtagccgatcccaattagtgggataaggcttggttgttgttgt 12611779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 39651091 - 39651026
Alignment:
Q  106 ttatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||||  ||||||||||||| ||||  |||  ||||||||||||||||||||||| ||||||    
T  39651091 ttatggtgtaatttgatccatatacccgaccccacttagtgggataaggcttggttgttgttgttg 39651026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 30198340 - 30198264
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||| ||||||||||| |||||||| || |  ||||  |||  ||||||||||||||||||||||| ||||||    
T  30198340 atgatagaatattatggtgtagtttgatctatgttgccgaccccacttagtgggataaggcttggttgttgttgttg 30198264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 12692278 - 12692239
Alignment:
Q  131 ccgatgccaactagtgggataaggcttggttgtttttgtt 170  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  12692278 ccgattccaattagtgggataaggcttggttgtttttgtt 12692239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 26055639 - 26055698
Alignment:
Q  105 attatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtt 164  Q
    |||||| || |||||||||||| || ||||| |||  |||||||||||||||||||||||    
T  26055639 attatgatggcgtttgatccatgtagccgatcccacttagtgggataaggcttggttgtt 26055698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 41031472 - 41031418
Alignment:
Q  117 tttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||||||| ||||  |||  ||||||||||||||||||||||| ||||||    
T  41031472 tttgatccatatagccgaccccacttagtgggataaggcttggttgttgttgttg 41031418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 41031578 - 41031524
Alignment:
Q  117 tttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||||||| ||||  |||  ||||||||||||||||||||||| ||||||    
T  41031578 tttgatccatatagccgaccccacttagtgggataaggcttggttgttgttgttg 41031524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 45419443 - 45419517
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgt 169  Q
    ||||||||  ||||||||||  |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||    
T  45419443 atgatagaacattatggtgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 45419517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 11523785 - 11523721
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  11523785 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 11523721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 14742144 - 14742080
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  14742144 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 14742080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 45209285 - 45209203
Alignment:
Q  89 ttattcatgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| |||||||| |||||||| || ||||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  45209285 ttatttatgatagaatattatggcgtagtttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 45209203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 33227439 - 33227493
Alignment:
Q  117 tttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||||| || ||||| ||| ||||||| |||||||||||||||||||||||    
T  33227439 tttgatccatgtagccgatcccacctagtggaataaggcttggttgtttttgttg 33227493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 44719432 - 44719359
Alignment:
Q  98 atagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||| |||||||||||||||||||||| || ||||  | |  |||||||||||| |||||||||| ||||||    
T  44719432 atagagcattatggtgtcgtttgatccatgtagccgaccctacttagtgggataagacttggttgttgttgttg 44719359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 19061997 - 19061933
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  ||| |||||||||||||||||||||||| ||||||    
T  19061997 tatggcgtcatttgatccatgtagccgaccccacctagtgggataaggcttggttgttgttgttg 19061933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 37042737 - 37042669
Alignment:
Q  96 tgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtt 164  Q
    |||||||  |||||||||||||||||||||| || ||||  | |  |||||||||||||||||||||||    
T  37042737 tgatagaacattatggtgtcgtttgatccatgtagccgacccgacttagtgggataaggcttggttgtt 37042669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 1328666 - 1328612
Alignment:
Q  117 tttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||||| || ||||| | | |||||||||||||||||||||||| ||||||    
T  1328666 tttgatccatgtatccgatcctacctagtgggataaggcttggttgttgttgttg 1328612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 6957828 - 6957882
Alignment:
Q  117 tttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||||| || ||||| |||  ||||||||||||||||||||||| ||||||    
T  6957828 tttgatccatgtagccgatcccacttagtgggataaggcttggttgttgttgttg 6957882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 33190876 - 33190846
Alignment:
Q  141 ctagtgggataaggcttggttgtttttgttg 171  Q
    |||||||||||||||||||||||||||||||    
T  33190876 ctagtgggataaggcttggttgtttttgttg 33190846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 21528508 - 21528572
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||| | |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  21528508 tatggtggcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 21528572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 28236390 - 28236466
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||| |||||||||||  ||||||| || || ||||  |||  |||||||||||| |||||||||| ||||||    
T  28236390 atgatagaatattatggtgtaatttgatctatgtagccgaccccacttagtgggataagacttggttgttgttgttg 28236466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 35555712 - 35555648
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| |||||||||| ||| || ||||  |||  |||||||| |||||||||||||||||||||    
T  35555712 tatggcgtcgtttgattcatgtagccgactccatttagtgggacaaggcttggttgtttttgttg 35555648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 50238677 - 50238613
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  50238677 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 50238613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 50238763 - 50238699
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  50238763 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 50238699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 52569577 - 52569513
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  52569577 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 52569513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 131
Target Start/End: Complemental strand, 2906119 - 2906031
Alignment:
Q  43 gaaactataaagaacaacctagagatcaatg-gttgg-tatagagatgttattcatgatagagtattatggtgtcgtttgatccatataac 131  Q
    |||||||| ||||| ||  |||||||||||| ||||| || ||| |||||||  |||||||| ||||||||||||||||||||||||||||    
T  2906119 gaaactattaagaaaaatgtagagatcaatgagttggataaagaaatgttat--atgatagaatattatggtgtcgtttgatccatataac 2906031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 8197615 - 8197539
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||| |||||||| |||||||||||||| || ||||  | |  ||||||||||| ||||||||||| ||||||    
T  8197615 atgatagaatattatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgttgttgttg 8197539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 8202375 - 8202299
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||| |||||||| |||||||||||||| || ||||  | |  ||||||||||| ||||||||||| ||||||    
T  8202375 atgatagaatattatggcgtcgtttgatccatgtagccgaccctacttagtgggataatgcttggttgttgttgttg 8202299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 170
Target Start/End: Complemental strand, 28960284 - 28960210
Alignment:
Q  96 tgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgtt 170  Q
    |||||||| | |||||||||||||||| ||| ||  |||  |||  ||||||||||||||||||||||| |||||    
T  28960284 tgatagagcactatggtgtcgtttgattcatgtagtcgactccatttagtgggataaggcttggttgttgttgtt 28960210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 15025721 - 15025778
Alignment:
Q  114 tcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||| ||| || ||||||| |  ||||||||||||||||||||||| ||||||    
T  15025721 tcgtttgattcatgtagccgatgcaacttagtgggataaggcttggttgttgttgttg 15025778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 227409 - 227473
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  227409 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 227473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 3635385 - 3635321
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  3635385 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 3635321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 4807815 - 4807879
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  4807815 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 4807879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 6219173 - 6219249
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||  ||||||||||  |||||||||| || || |  ||| ||||| |||||||||||||||||| ||||||    
T  6219173 atgatagaacattatggtgtaatttgatccatgtagccaaccccacctagttggataaggcttggttgttattgttg 6219249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 17670688 - 17670752
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  17670688 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 17670752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 30306252 - 30306316
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  30306252 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 30306316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 52814359 - 52814292
Alignment:
Q  104 tattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||| ||||||||||||||| || || || |||  ||||||| ||||||||||||||||||||||    
T  52814359 tattatgatgtcgtttgatccatgtagcctatcccacttagtgggttaaggcttggttgtttttgttg 52814292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 37430484 - 37430418
Alignment:
Q  105 attatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||| || |||||||||||||| ||||| |||  ||||| ||||||||||||||||| ||||||    
T  37430484 attatggcgtagtttgatccatatagccgatcccacttagtgagataaggcttggttgttgttgttg 37430418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 2545173 - 2545101
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgttttt 167  Q
    ||||||||  ||||||||||||||||||| || || |||| ||||| ||||||||||   |||||||||||||    
T  2545173 atgatagaacattatggtgtcgtttgatcaatttagccgacgccaattagtgggatagaccttggttgttttt 2545101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 170
Target Start/End: Complemental strand, 30396803 - 30396728
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgtt 170  Q
    ||||||||  ||||||||| |||||||||| | || || |  |||  |||||||||||||||||||||||||||||    
T  30396803 atgatagaacattatggtggcgtttgatccgtgtagccaaccccacttagtgggataaggcttggttgtttttgtt 30396728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 43028870 - 43028808
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgt 169  Q
    |||||||||||||||| ||| ||| |||  |||  ||||||||||||||||||||||| ||||    
T  43028870 tatggtgtcgtttgattcatgtaagcgaccccacttagtgggataaggcttggttgttgttgt 43028808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 1210965 - 1211029
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  1210965 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 1211029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 172
Target Start/End: Original strand, 6025826 - 6025890
Alignment:
Q  108 atggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttgg 172  Q
    |||| ||| |||||||||| || ||||| |||  |||||||||||  ||||||||||||||||||    
T  6025826 atggcgtcatttgatccatgtagccgattccacttagtgggataatacttggttgtttttgttgg 6025890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 25979293 - 25979229
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  25979293 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 25979229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 29577472 - 29577536
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  29577472 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 29577536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 30202192 - 30202128
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  30202192 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 30202128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 41165498 - 41165566
Alignment:
Q  103 gtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||| ||| |||||||||| || ||||  |||  |||||||| |||||||||||||| ||||||    
T  41165498 gtattatggcgtcatttgatccatgtagccgaccccacttagtgggaaaaggcttggttgttgttgttg 41165566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 41560437 - 41560513
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||  ||||||| ||  |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  41560437 atgatagaacattatggcgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 41560513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 45841067 - 45840994
Alignment:
Q  98 atagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||||||| ||||||||||||||| || | ||  |||| |||||| ||||| |||||||||| ||||||    
T  45841067 atagagtattatgatgtcgtttgatccatgtagctgaccccaattagtggtataagacttggttgttgttgttg 45840994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 37618165 - 37618229
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  37618165 tatggtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 37618229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 171
Target Start/End: Original strand, 476030 - 476059
Alignment:
Q  142 tagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||||||||||||||||||||||||    
T  476030 tagtgggataaggcttggttgtttttgttg 476059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 33073159 - 33073212
Alignment:
Q  117 tttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgtt 170  Q
    |||||||||| || ||||| |||  ||||||||||||||||||||||| |||||    
T  33073159 tttgatccatgtagccgatcccacttagtgggataaggcttggttgttattgtt 33073212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 2885784 - 2885720
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||  |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  2885784 tatggtgtaatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 2885720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 11594180 - 11594244
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  11594180 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 11594244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 12841337 - 12841273
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  12841337 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 12841273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 28208390 - 28208326
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  28208390 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 28208326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 31005429 - 31005489
Alignment:
Q  111 gtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  31005429 gtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 31005489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 31682664 - 31682600
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  31682664 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 31682600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 38607212 - 38607276
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| |||||||||||||| || ||||  |||  ||||||| ||||||||||||||| ||||||    
T  38607212 tatggcgtcgtttgatccatgtagccgactccacttagtgggttaaggcttggttgttgttgttg 38607276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 39906434 - 39906370
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  39906434 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 39906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 28085596 - 28085660
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  28085596 tatggtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 28085660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 4245899 - 4245870
Alignment:
Q  142 tagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||||||||||||||||||||||||    
T  4245899 tagtgggataaggcttggttgtttttgttg 4245870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 30213795 - 30213859
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||||||||||    
T  30213795 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgtttttgttg 30213859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 36123256 - 36123180
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||  ||||||||| |||||||||||| ||| || | |||  |||||||||||| |||||||||| ||||||    
T  36123256 atgatagaacattatggtggcgtttgatccatgtaatcggtcccacttagtgggataagacttggttgttgttgttg 36123180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 171
Target Start/End: Complemental strand, 408565 - 408492
Alignment:
Q  98 atagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| || ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  408565 atagaatactatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 408492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 14667979 - 14668047
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgt 163  Q
    ||||||||  ||||||||||  |||||||||| |||||||  |||  |||||||||||| |||||||||    
T  14667979 atgatagaacattatggtgtaatttgatccatgtaaccgaccccacttagtgggataagacttggttgt 14668047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 29816602 - 29816666
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  29816602 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 29816666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 45468793 - 45468852
Alignment:
Q  105 attatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtt 164  Q
    ||||||| ||||||||||| || |||||||| |||  |||||| ||||||||||||||||    
T  45468793 attatggcgtcgtttgatctatgtaaccgatcccacttagtggaataaggcttggttgtt 45468852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 158
Target Start/End: Original strand, 53951963 - 53952026
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttg 158  Q
    |||||||| ||||| |||| ||||||||||||||| ||||  |||  |||||||||||||||||    
T  53951963 atgatagaatattacggtgccgtttgatccatatagccgaccccacatagtgggataaggcttg 53952026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 169
Target Start/End: Complemental strand, 31566223 - 31566161
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgt 169  Q
    ||||||||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||    
T  31566223 tatggtgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgt 31566161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 19676155 - 19676078
Alignment:
Q  95 atgatagagtattatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttgg 172  Q
    ||||||||| ||||||| ||  |||||||||| || | ||  |||  ||||||||||||||||||||||| |||||||    
T  19676155 atgatagagcattatggcgtgatttgatccatgtagctgaccccacttagtgggataaggcttggttgttattgttgg 19676078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 31260994 - 31260965
Alignment:
Q  142 tagtgggataaggcttggttgtttttgttg 171  Q
    ||||||||||||||||||||||||||||||    
T  31260994 tagtgggataaggcttggttgtttttgttg 31260965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 5169052 - 5169116
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  5169052 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 5169116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 7120813 - 7120865
Alignment:
Q  117 tttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgt 169  Q
    ||||||||||||||||||| |||  |||||||||| ||| |||||||| ||||    
T  7120813 tttgatccatataaccgataccacttagtgggatatggcctggttgttgttgt 7120865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 12096767 - 12096703
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  12096767 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 12096703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 28951 - 28887
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    ||||| ||| |||||||||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  28951 tatggcgtcatttgatccatgtagccgaccccacttagtgggataaggcttggttgttgttgttg 28887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Complemental strand, 99348 - 99284
Alignment:
Q  107 tatggtgtcgtttgatccatataaccgatgccaactagtgggataaggcttggttgtttttgttg 171  Q
    |||||||||||||||  ||| || ||||  |||  ||||||||||||||||||||||| ||||||    
T  99348 tatggtgtcgtttgaatcatgtagccgacaccacatagtgggataaggcttggttgttgttgttg 99284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University