View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12194_high_1 (Length: 881)

Name: NF12194_high_1
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12194_high_1
NF12194_high_1
[»] chr2 (7 HSPs)
chr2 (582-819)||(18929651-18929887)
chr2 (578-758)||(17403198-17403377)
chr2 (675-794)||(26651281-26651400)
chr2 (610-730)||(25519999-25520118)
chr2 (823-881)||(18929485-18929543)
chr2 (12-56)||(17403898-17403942)
chr2 (823-881)||(19879059-19879117)
[»] chr3 (12 HSPs)
chr3 (577-755)||(9033046-9033225)
chr3 (607-796)||(4765286-4765475)
chr3 (578-791)||(4770096-4770307)
chr3 (676-794)||(24698727-24698845)
chr3 (675-755)||(15687340-15687420)
chr3 (677-770)||(16242605-16242699)
chr3 (675-793)||(29614037-29614155)
chr3 (688-796)||(4832190-4832300)
chr3 (823-879)||(29614512-29614568)
chr3 (823-881)||(7148947-7149005)
chr3 (675-758)||(13428406-13428488)
chr3 (823-881)||(15687108-15687166)
[»] chr4 (2 HSPs)
chr4 (674-817)||(11362017-11362160)
chr4 (641-719)||(10071001-10071078)
[»] chr6 (8 HSPs)
chr6 (578-791)||(17525233-17525444)
chr6 (608-736)||(31125745-31125872)
chr6 (581-755)||(22394009-22394179)
chr6 (675-759)||(16177672-16177759)
chr6 (823-881)||(16177461-16177519)
chr6 (716-793)||(1176918-1176994)
chr6 (686-772)||(32784447-32784534)
chr6 (823-881)||(31126065-31126123)
[»] chr8 (5 HSPs)
chr8 (563-819)||(28371450-28371705)
chr8 (674-792)||(23539981-23540099)
chr8 (677-755)||(10662109-10662187)
chr8 (578-755)||(16600980-16601159)
chr8 (823-881)||(28371283-28371341)
[»] chr5 (16 HSPs)
chr5 (605-812)||(20064063-20064265)
chr5 (674-794)||(25951664-25951783)
chr5 (675-794)||(20058300-20058418)
chr5 (674-772)||(21165557-21165655)
chr5 (672-794)||(23209772-23209893)
chr5 (675-794)||(20061207-20061323)
chr5 (823-880)||(20713386-20713443)
chr5 (675-719)||(19217727-19217771)
chr5 (721-794)||(20713575-20713647)
chr5 (648-756)||(24878782-24878889)
chr5 (644-719)||(17987914-17987988)
chr5 (822-881)||(23210024-23210083)
chr5 (831-881)||(20064388-20064438)
chr5 (12-54)||(24879513-24879555)
chr5 (644-754)||(22011479-22011588)
chr5 (825-879)||(25951474-25951528)
[»] chr1 (6 HSPs)
chr1 (678-815)||(20146549-20146686)
chr1 (675-796)||(11013493-11013614)
chr1 (563-756)||(22619579-22619770)
chr1 (823-870)||(11013745-11013792)
chr1 (823-870)||(33103226-33103273)
chr1 (674-756)||(17615684-17615766)
[»] scaffold0555 (2 HSPs)
scaffold0555 (682-815)||(5337-5470)
scaffold0555 (823-881)||(5582-5640)
[»] chr7 (10 HSPs)
chr7 (662-755)||(2545771-2545864)
chr7 (674-815)||(20146231-20146371)
chr7 (677-819)||(14986744-14986882)
chr7 (677-819)||(15416355-15416493)
chr7 (675-794)||(4173104-4173222)
chr7 (823-881)||(20146061-20146119)
chr7 (823-880)||(2547158-2547215)
chr7 (673-709)||(2563197-2563233)
chr7 (823-881)||(14986989-14987047)
chr7 (823-881)||(15416600-15416658)
[»] scaffold0795 (2 HSPs)
scaffold0795 (675-819)||(5725-5869)
scaffold0795 (823-881)||(5971-6029)
[»] scaffold0002 (2 HSPs)
scaffold0002 (578-731)||(373696-373847)
scaffold0002 (823-870)||(374041-374088)
[»] scaffold0161 (1 HSPs)
scaffold0161 (682-794)||(5276-5388)
[»] scaffold0264 (2 HSPs)
scaffold0264 (685-796)||(21225-21337)
scaffold0264 (823-881)||(21039-21097)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 2e-76; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 582 - 819
Target Start/End: Complemental strand, 18929887 - 18929651
Alignment:
Q  582 atcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagc 681  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||| ||| |||| |||||||||||    
T  18929887 atcatgctttgaaatacttagagttttctcaaaaatgtcaattctctcctttgaatatattcagtcgaaaatgacattt-ttgaggggaaatttgttagc 18929789  T
Q  682 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 781  Q
    |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||||||||||||||| ||||| ||||| ||||||||||| |  |||    
T  18929788 tggtattttcaccaacctcatttaatgtggtgaacattagttgacttttactcttgcaggaattgaagtattttcctcaattaaaggagtttcgacaaga 18929689  T
Q  782 tgttggacttagcattgaaaagtctcgaagccttaaag 819  Q
    | |||||||||||||  |||||||||||| ||||||||    
T  18929688 ttttggacttagcatgaaaaagtctcgaatccttaaag 18929651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 578 - 758
Target Start/End: Complemental strand, 17403377 - 17403198
Alignment:
Q  578 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 677  Q
    ||||||||||||||||||||||||| |||| || ||||||||||||  ||||| | ||  || ||  ||| |||||||||||| ||   ||| ||||| |    
T  17403377 tgacatcatgctttgaaatacttagagttt-ctgaaaaatgtcaatcttctccttcgaaaatctttagtcaaaaatggcatttttttttgggaaattttt 17403279  T
Q  678 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 758  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||| | ||||||  |||||| |||||||||||||||||    
T  17403278 tagctggtaattttaccagcctcatttaatgtggtcaacattagttaacttttacctttgcagcaattgaagtcttttctt 17403198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 675 - 794
Target Start/End: Complemental strand, 26651400 - 26651281
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 774  Q
    ||||||| |||| |||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||| ||||| ||||||||||   ||||||||||    
T  26651400 tgttagcaggtaatttcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagaaatcgaagttttttcttcaacttaaggagtttc 26651301  T
Q  775 aaagagatgttggacttagc 794  Q
    || || ||||||||||||||    
T  26651300 aacgatatgttggacttagc 26651281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 610 - 730
Target Start/End: Original strand, 25519999 - 25520118
Alignment:
Q  610 tcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgt 709  Q
    ||||||||| ||||| ||||| | |||||||||| |||||||||||||||| ||||| |||||||||||||   |||||||||  || |  ||||||||     
T  25519999 tcaaaaatgccaattatctccttcgattatattcagtcgaaaatggcattt-ttgggtggcaatttgttaggctgtattttcaaaaggccaatttaatgc 25520097  T
Q  710 ggtcaacattggttgattttt 730  Q
     ||||||||| ||||| ||||    
T  25520098 agtcaacattagttgactttt 25520118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 18929543 - 18929485
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| ||||||||||    
T  18929543 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttcc 18929485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 17403942 - 17403898
Alignment:
Q  12 cagagacagagtatggaataagtacatgagatttccaaatcttgg 56  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||||    
T  17403942 cagagacagagtatggaatgagtacctgagatttctaaatcttgg 17403898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 19879117 - 19879059
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||||||||| |||||  || |||| |||| |||||||| ||||||||||    
T  19879117 tgggagacaagcgtttgtcaacatgagaggagtgttgatcgtgggattagtttctttcc 19879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 106; Significance: 1e-52; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 577 - 755
Target Start/End: Original strand, 9033046 - 9033225
Alignment:
Q  577 gtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggc--aatt 674  Q
    |||||||||||||||| |||||||    ||||| |||||||| |||||| |||| |||||||||||| |||||||||||||||| ||||||| |  ||||    
T  9033046 gtgacatcatgctttggaatactttaatttttcccaaaaatgccaattccctcctttgattatattcagtcgaaaatggcattt-ttgggggtcccaatt 9033144  T
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 755  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||    
T  9033145 tgttagctggtattttcaccagcctcatttaatatggtcaacattagttgacttttactcttgcaggaattgaagtctttt 9033225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 607 - 796
Target Start/End: Original strand, 4765286 - 4765475
Alignment:
Q  607 ttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaa 706  Q
    |||||||||||  ||||||||||| |  | | | ||| |||||||||||||||| |||||| | |||||||||| ||| |||||||||||||||||||||    
T  4765286 ttctcaaaaataccaattctctccttctaatttgttcagtcgaaaatggcattt-ttggggtgtaatttgttagttggaattttcaccagcctcatttaa 4765384  T
Q  707 tgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgttggacttagcat 796  Q
    |||| |||||||| ||||| |||||||||||||||||| ||||| |||| ||||||   |||||||||| | || ||||||||||||||||    
T  4765385 tgtgatcaacattagttgacttttactcttgcaggaatcgaagttttttccttcaacttaaggagtttcgacgaaatgttggacttagcat 4765475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 578 - 791
Target Start/End: Complemental strand, 4770307 - 4770096
Alignment:
Q  578 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 677  Q
    ||||||||||||||||||||||||| |||| || ||||||| ||||||||||| | || || |||| |||||||||||||||||  |||||| || ||||    
T  4770307 tgacatcatgctttgaaatacttagagttt-ctaaaaaatgccaattctctccttcgaatagattcagtcgaaaatggcatttca-ggggggtaaattgt 4770210  T
Q  678 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 777  Q
    ||||||||| ||| | ||| ||| |||||||||| ||||||| ||| | |||||  ||||||||||| | ||||||||||||||   ||||| |||  |     
T  4770209 tagctggtaattttaacagactcgtttaatgtggccaacattcgtttacttttatccttgcaggaatcgtagtcttttcttcaacataaggaattttgac 4770110  T
Q  778 gagatgttggactt 791  Q
    ||||||||||||||    
T  4770109 gagatgttggactt 4770096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 676 - 794
Target Start/End: Original strand, 24698727 - 24698845
Alignment:
Q  676 gttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttca 775  Q
    |||||||| || |||||||| ||||||||||| | ||||||||| ||||| ||||||| ||| |||||||||||||||||||||||   ||||||||||     
T  24698727 gttagctgataatttcaccaacctcatttaatttagtcaacattagttgacttttactattggaggaattgaagtcttttcttcaacataaggagtttcg 24698826  T
Q  776 aagagatgttggacttagc 794  Q
    | |||||||| ||||||||    
T  24698827 acgagatgttagacttagc 24698845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 675 - 755
Target Start/End: Complemental strand, 15687420 - 15687340
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 755  Q
    ||||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||  |||||||||    
T  15687420 tgttagctggtaagttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgtaggaatcaaagtctttt 15687340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 677 - 770
Target Start/End: Original strand, 16242605 - 16242699
Alignment:
Q  677 ttagctggtattttcaccagcctcatttaatgtggtcaacattggtt-gatttttactcttgcaggaattgaagtcttttcttcaatcaaaggag 770  Q
    |||||||||||||||| || ||||||||||||||||||||||| ||| || | ||||| |||||||||  ||||||||||| |||||||||||||    
T  16242605 ttagctggtattttcatcaacctcatttaatgtggtcaacattagttagactgttacttttgcaggaagcgaagtcttttcctcaatcaaaggag 16242699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 675 - 793
Target Start/End: Original strand, 29614037 - 29614155
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagttt 773  Q
    ||||||||| ||||||||| ||||||||||||||||||||| ||| ||||| ||||||||||||| ||||  ||| | |||||||||| | |||||| ||    
T  29614037 tgttagctgctattttcactagcctcatttaatgtggtcaatattagttgacttttactcttgcatgaatcaaagtttttttcttcaaacgaaggag-tt 29614135  T
Q  774 caaagagatgttggacttag 793  Q
    | | ||||||| ||||||||    
T  29614136 cgacgagatgtaggacttag 29614155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 688 - 796
Target Start/End: Original strand, 4832190 - 4832300
Alignment:
Q  688 tttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtctttt-cttcaatcaaaggagtttcaaagagatgtt 785  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||  |||| |||||||| |||||||||| ||| ||    ||||||||  | ||||||||    
T  4832190 tttcaccagcctcatttaatatggtcaacattagttgactttttatctttgcaggaatcgaagtctttttcttgaacttgaggagttttgacgagatgtt 4832289  T
Q  786 ggacttagcat 796  Q
    |||||||||||    
T  4832290 ggacttagcat 4832300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 823 - 879
Target Start/End: Original strand, 29614512 - 29614568
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttcttt 879  Q
    |||| |||||||  ||||||||||||||| |||||||||||||||||| ||||||||    
T  29614512 tgggcgacaagcagttgtctacatggaaggagtgctgattgtgggattagtttcttt 29614568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 7149005 - 7148947
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||| | ||||||||||||||| |||| |||| |||||||| ||||||||||    
T  7149005 tgggagacaagtggttgtctacatggaaggagtgttgatcgtgggattagtttctttcc 7148947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 675 - 758
Target Start/End: Original strand, 13428406 - 13428488
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttctt 758  Q
    |||||||||||| ||||||||||||| ||||||| |||| ||||| ||||| |||  || ||||| |||| ||||| |||||||    
T  13428406 tgttagctggtaatttcaccagcctcgtttaatgcggtcgacattagttgactttatct-ttgcatgaatcgaagtgttttctt 13428488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 15687166 - 15687108
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||| |||||| |||| |||| |||| |||||||| ||||||||||    
T  15687166 tgggagacaagcggttgcctacatagaaggagtgatgatcgtgggattagtttctttcc 15687108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 674 - 817
Target Start/End: Complemental strand, 11362160 - 11362017
Alignment:
Q  674 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 773  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||   |||||||||    
T  11362160 ttgttagctggtattttcaccagcctcatttaaagtggtcaacattagttgacttttactcttgcaggtattgaagtcttttcttcaacttaaggagttt 11362061  T
Q  774 caaagagatgttggacttagcattgaaaagtctcgaagccttaa 817  Q
    ||| |||||||||||||||||||  |||| ||||||||||||||    
T  11362060 caacgagatgttggacttagcatgaaaaattctcgaagccttaa 11362017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 641 - 719
Target Start/End: Complemental strand, 10071078 - 10071001
Alignment:
Q  641 ttccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 719  Q
    ||||||||||||| |||||| |||||||| | |||||||||  ||| ||||  ||| |||||||||| |||||||||||    
T  10071078 ttccgtcgaaaattgcattt-ttggggggaattttgttagcctgtaatttcgacaggctcatttaatatggtcaacatt 10071001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 578 - 791
Target Start/End: Complemental strand, 17525444 - 17525233
Alignment:
Q  578 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 677  Q
    |||||||||||||| |||||||||| ||||| ||||||||    ||||||||| |||| ||||||  ||||||||| |||||| ||||||||||||||||    
T  17525444 tgacatcatgcttttaaatacttagagtttt-tcaaaaattctgattctctcctttgaatatattttgtcgaaaatagcattt-ttggggggcaatttgt 17525347  T
Q  678 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 777  Q
    ||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |  |||||| |||| |||||||||||   ||| ||||||||     
T  17525346 tagctggtaatttcaccagtctcatttaatgtggtcaacattagttgacttttactcctctaggaatcgaagccttttcttcaacttaagaagtttcaac 17525247  T
Q  778 gagatgttggactt 791  Q
    |||||||| |||||    
T  17525246 gagatgttagactt 17525233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 608 - 736
Target Start/End: Original strand, 31125745 - 31125872
Alignment:
Q  608 tctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaat 707  Q
    ||||||||||| ||||||||||| |||| ||||||| || ||||||  ||||| || ||||||||||| ||||||| ||||||||||| |||||||||||    
T  31125745 tctcaaaaatgccaattctctcctttgaatatattcagtagaaaatttcattt-ttagggggcaattttttagctgatattttcaccatcctcatttaat 31125843  T
Q  708 gtggtcaacattggttgatttttactctt 736  Q
    |||||||||||| ||||| ||||||||||    
T  31125844 gtggtcaacattagttgacttttactctt 31125872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 581 - 755
Target Start/End: Original strand, 22394009 - 22394179
Alignment:
Q  581 catcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttag 680  Q
    ||||||||| || ||||||||| |||| |||||||||  ||||| ||||| |  | || |||  |||||||||| ||||| |||||||||||| ||||||    
T  22394009 catcatgctctggaatacttagagttt-ctcaaaaattccaattatctccttcaaatagattttgtcgaaaatgacattt-ttggggggcaatctgttag 22394106  T
Q  681 ctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 755  Q
     ||||| ||||||||||||  |||||||||||||||||| |||   ||||||||||||||||||  |||||||||    
T  22394107 ttggtaatttcaccagcct--tttaatgtggtcaacattagttccgttttactcttgcaggaatcaaagtctttt 22394179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 675 - 759
Target Start/End: Complemental strand, 16177759 - 16177672
Alignment:
Q  675 tgttagctggtattttcacc---agcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttc 759  Q
    ||||||||||||||||||||   |||||||||||||||||| |||||| ||||| ||||||||||| ||||||  |||||||||||||    
T  16177759 tgttagctggtattttcacctccagcctcatttaatgtggttaacattagttgacttttactcttgtaggaatcaaagtcttttcttc 16177672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 16177519 - 16177461
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||    
T  16177519 tgggagacaagcggttgtctacatggaaggagtgctgattgtgggattagtttctttcc 16177461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 716 - 793
Target Start/End: Original strand, 1176918 - 1176994
Alignment:
Q  716 cattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttag 793  Q
    |||| ||||| |||||||||||||||||| ||| ||||||||||||| ||||||| ||||| ||||||||||| ||||    
T  1176918 cattagttgacttttactcttgcaggaatcgaaatcttttcttcaataaaaggag-ttcaacgagatgttggatttag 1176994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 686 - 772
Target Start/End: Complemental strand, 32784534 - 32784447
Alignment:
Q  686 attttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtc-ttttcttcaatcaaaggagtt 772  Q
    ||||||| ||| ||||||||||||||| || ||| ||||| ||||||| || ||||||||||| || |||||| ||||||| ||||||    
T  32784534 attttcatcagtctcatttaatgtggttaatattagttgacttttacttttacaggaattgaaatctttttctacaatcaatggagtt 32784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 823 - 881
Target Start/End: Original strand, 31126065 - 31126123
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||||||||||||| |||||| ||  ||||||| ||||||||||    
T  31126065 tgggagacaagcgattgtctacatggaaggagtgctaatcttgggattagtttctttcc 31126123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 8e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 563 - 819
Target Start/End: Complemental strand, 28371705 - 28371450
Alignment:
Q  563 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 662  Q
    |||||||||| |  |||||||||||||||| ||||| ||| ||||||||||||||||||||||||||  |||| | ||||| |||||||||  ||||| |    
T  28371705 aagtcatgattagagtgacatcatgctttggaatacatagagttttctcaaaaatgtcaattctctcttttgaatgtattcagtcgaaaataacattttt 28371606  T
Q  663 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaat 762  Q
    ||| || ||||||||||| |||||||||||| ||| | ||||||||||| ||| ||| ||||| ||||| ||| | |||||| |||  |||| | ||| |    
T  28371605 tggtgg-caatttgttagttggtattttcactagcataatttaatgtggccaatattagttgacttttattctggtaggaatcgaaacctttccctcagt 28371507  T
Q  763 caaaggagtttcaaagagatgttggacttagcattgaaaagtctcgaagccttaaag 819  Q
     ||||||||||  | |||||||||||||||||||  |||||||| ||||||||||||    
T  28371506 taaaggagttttgacgagatgttggacttagcatgaaaaagtctggaagccttaaag 28371450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 674 - 792
Target Start/End: Original strand, 23539981 - 23540099
Alignment:
Q  674 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 773  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||||||||||||| | ||||||||||||||||||||||||||||||    
T  23539981 ttgttagctcgtattgtcaccagcctcatttaatgtggtcaatattagttgacttttactcttgcagtatttgaagtcttttcttcaatcaaaggagttt 23540080  T
Q  774 caaagagatgttggactta 792  Q
    | | |||||||||||||||    
T  23540081 cgacgagatgttggactta 23540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 677 - 755
Target Start/End: Complemental strand, 10662187 - 10662109
Alignment:
Q  677 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 755  Q
    ||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||    
T  10662187 ttagctgataatttcaccagactcatttaatgtggtcaacattagttgacttttactcttgcaggactcgaagtctttt 10662109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 755
Target Start/End: Complemental strand, 16601159 - 16600980
Alignment:
Q  578 tgacatcatgctttgaaatacttag--cgttttctcaaaaatgtcaattctctccgttgat-tatattccgtcgaaaatggcatttcttggggggcaatt 674  Q
    ||||||||||||||||||| ||| |  |||||| |||||||||||||||| |||| | ||  | | ||| |||||||||| ||||| ||| ||| |||||    
T  16601159 tgacatcatgctttgaaatgcttgggacgtttt-tcaaaaatgtcaattccctccttcgaaattttttcagtcgaaaatgacattttttgaggg-caatt 16601062  T
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttga-tttttactcttgcaggaattgaagtctttt 755  Q
    | |||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| ||||||   |||||||||||||||| ||||    
T  16601061 tattagcctgtaatttcaacagactcatttaatgcagtcaacattagttgactttttatctttgcaggaattgaagtatttt 16600980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 28371341 - 28371283
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| |||| ||||||||||    
T  28371341 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgagattagtttctttcc 28371283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 605 - 812
Target Start/End: Original strand, 20064063 - 20064265
Alignment:
Q  605 ttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcattt 704  Q
    ||||| ||||||||||||| |||||| |||| ||   ||  ||||||||| ||||| ||||||| |||||||||||||| |||||||||||||||| |||    
T  20064063 ttttcccaaaaatgtcaatcctctcctttgagtag--tcattcgaaaatgacattt-ttgggggacaatttgttagctgttattttcaccagcctcgttt 20064159  T
Q  705 aatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagcattgaaaagt 804  Q
    ||||||||||||||  ||||| |||||||||||||||||| ||||||||||||||||||||| ||| ||| | |||||||||||| ||||  | ||||||    
T  20064160 aatgtggtcaacatcagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttcgacgagatgttggacctagc-gtaaaaagt 20064257  T
Q  805 ctcgaagc 812  Q
    ||||||||    
T  20064258 ctcgaagc 20064265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 674 - 794
Target Start/End: Complemental strand, 25951783 - 25951664
Alignment:
Q  674 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 773  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||  |||||||||||  ||||||||||| ||    
T  25951783 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattagttgacttttactcttgcacgaatcaaagtcttttctctaatcaaaggag-tt 25951685  T
Q  774 caaagagatgttggacttagc 794  Q
    ||| || |||||||| |||||    
T  25951684 caacgaaatgttggatttagc 25951664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 675 - 794
Target Start/End: Original strand, 20058300 - 20058418
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 774  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| ||||| |||||||||||||||||| ||||||||||||||||||||| ||| |||    
T  20058300 tgttagctgatattttcaccagcctcatttaatgtggtcagtattagttgacttttactcttgcaggaatcgaagtcttttcttcaatcaaaagag-ttc 20058398  T
Q  775 aaagagatgttggacttagc 794  Q
     | |||||||||||| ||||    
T  20058399 gacgagatgttggacctagc 20058418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 674 - 772
Target Start/End: Complemental strand, 21165655 - 21165557
Alignment:
Q  674 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtt 772  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||||  ||||||||| |||||||||||||||||    
T  21165655 ttgttagctagtatttttaccagcctcacttaatgtggtcaacattagttgacttttactcttgcaggaagcgaagtctttccttcaatcaaaggagtt 21165557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 672 - 794
Target Start/End: Original strand, 23209772 - 23209893
Alignment:
Q  672 atttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagt 771  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||| | ||||| |||||||||||||||||| ||||| |||||||||| ||||||||     
T  23209772 atttattagctgttatttgcaccagcctcaattaatgtggtcaacaatagttgacttttactcttgcaggaatcgaagtattttcttcaaacaaaggag- 23209870  T
Q  772 ttcaaagagatgttggacttagc 794  Q
    ||| | ||||||||||| |||||    
T  23209871 ttcgacgagatgttggatttagc 23209893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 675 - 794
Target Start/End: Complemental strand, 20061323 - 20061207
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 774  Q
    |||| |||||||||| |||||||||| |||||| |||||| |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||||| | |||    
T  20061323 tgtttgctggtattt-caccagcctcgtttaatatggtcaccattagttgacttttactcttgcaggaatcgaagt-ttttcttcaatgaaaggtg-ttc 20061227  T
Q  775 aaagagatgttggacttagc 794  Q
     | |||||||||||||||||    
T  20061226 gacgagatgttggacttagc 20061207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 823 - 880
Target Start/End: Complemental strand, 20713443 - 20713386
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttc 880  Q
    ||||||||||||| ||||||||||||||| ||||||||| |||||||| |||||||||    
T  20713443 tgggagacaagcggttgtctacatggaaggagtgctgatcgtgggattagtttctttc 20713386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 675 - 719
Target Start/End: Original strand, 19217727 - 19217771
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacatt 719  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  19217727 tgttagctggtaatttcaccagcctcatttaatgtggtcaacatt 19217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 721 - 794
Target Start/End: Complemental strand, 20713647 - 20713575
Alignment:
Q  721 gttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagagatgttggacttagc 794  Q
    ||||| ||||| ||||||||||||  |||||||||||||||||||||||| ||| | ||||| |||||||||||    
T  20713647 gttgacttttattcttgcaggaatcaaagtcttttcttcaatcaaaggag-ttcgacgagatattggacttagc 20713575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 648 - 756
Target Start/End: Complemental strand, 24878889 - 24878782
Alignment:
Q  648 gaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattga 747  Q
    ||||||| ||||| ||||||| ||||||||||||  ||| ||||| ||| |||||||||||  ||||||||| ||||| |||||   ||||| |||| ||    
T  24878889 gaaaatgacattt-ttgggggtcaatttgttagcctgtaatttcaacaggctcatttaatgcagtcaacattagttgacttttatctttgcaagaatcga 24878791  T
Q  748 agtcttttc 756  Q
    |||||||||    
T  24878790 agtcttttc 24878782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 644 - 719
Target Start/End: Complemental strand, 17987988 - 17987914
Alignment:
Q  644 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacatt 719  Q
    |||||||||||| |||| |||||||||| |||||||||| ||| ||||  ||| |||||||||| |||||||||||    
T  17987988 cgtcgaaaatgggattt-ttggggggcattttgttagcttgtaatttcgacaggctcatttaatatggtcaacatt 17987914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 822 - 881
Target Start/End: Original strand, 23210024 - 23210083
Alignment:
Q  822 atgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    |||||||||||||| ||||||| ||||||| |||| |||| |||||||| ||||||||||    
T  23210024 atgggagacaagcggttgtctaaatggaaggagtgttgatcgtgggattagtttctttcc 23210083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 831 - 881
Target Start/End: Original strand, 20064388 - 20064438
Alignment:
Q  831 aagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||| |||||||||||||||  ||||||||||||||||| ||||||||||    
T  20064388 aagcggttgtctacatggaaggtgtgctgattgtgggattagtttctttcc 20064438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 24879555 - 24879513
Alignment:
Q  12 cagagacagagtatggaataagtacatgagatttccaaatctt 54  Q
    ||||||||||||||||||| ||||| |||||||||||||||||    
T  24879555 cagagacagagtatggaatgagtacctgagatttccaaatctt 24879513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 644 - 754
Target Start/End: Complemental strand, 22011588 - 22011479
Alignment:
Q  644 cgtcgaaaatggcatttcttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaaca-ttggttga-tttttactcttgcagg 741  Q
    ||||||||||||||||| |  ||||||| ||||||||   ||| ||||| |||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  22011588 cgtcgaaaatggcattttt--gggggcagtttgttagtctgtaatttcaacagattcatttaatgtggtcaacatttggttgactttttact-ttgcagg 22011492  T
Q  742 aattgaagtcttt 754  Q
    ||| |||| ||||    
T  22011491 aatcgaaggcttt 22011479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 825 - 879
Target Start/End: Complemental strand, 25951528 - 25951474
Alignment:
Q  825 ggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttcttt 879  Q
    ||||||||||| ||||||||||||||| |||| |||| ||| |||| ||||||||    
T  25951528 ggagacaagcggttgtctacatggaaggagtgttgatcgtgagattagtttcttt 25951474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 82; Significance: 3e-38; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 678 - 815
Target Start/End: Complemental strand, 20146686 - 20146549
Alignment:
Q  678 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaa 777  Q
    |||||||||| |||||||| |||||||||||||| ||||||| ||| | | |||||||||||||||| ||||||||||  ||||||  ||||||||| |     
T  20146686 tagctggtatattcaccagtctcatttaatgtggccaacattagttaactattactcttgcaggaatcgaagtcttttactcaatcgtaggagtttcgac 20146587  T
Q  778 gagatgttggacttagcattgaaaagtctcgaagcctt 815  Q
    ||||||||||||||||||||||||||||||||||||||    
T  20146586 gagatgttggacttagcattgaaaagtctcgaagcctt 20146549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 675 - 796
Target Start/End: Original strand, 11013493 - 11013614
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 774  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| | | | |||||||||||||||||| ||||||||||||||||   ||||||||||    
T  11013493 tgttagctggtaatttcatcagcctcatttaatgtggtcaacattagcttacttttactcttgcaggaatcgaagtcttttcttcaacttaaggagtttc 11013592  T
Q  775 aaagagatgttggacttagcat 796  Q
     | |||||||||||||||||||    
T  11013593 gacgagatgttggacttagcat 11013614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 563 - 756
Target Start/End: Original strand, 22619579 - 22619770
Alignment:
Q  563 aagtcatgataattgtgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttct 662  Q
    |||||||||| | | ||||||||||||||||||||||||  ||||| |||||| |  ||||| ||||| | || | ||||| |||||||||| ||||| |    
T  22619579 aagtcatgattaatatgacatcatgctttgaaatacttatagtttt-tcaaaattaccaattatctccttcgaatgtattcagtcgaaaatgacattt-t 22619676  T
Q  663 tggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 756  Q
    |||| ||||||||||||||   ||||| ||  || |||||||||||||||||||||| ||||| |||||   |||||||||| |||||||||||    
T  22619677 tgggaggcaatttgttagcctatatttccaaaaggctcatttaatgtggtcaacattagttgacttttatctttgcaggaatcgaagtcttttc 22619770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 823 - 870
Target Start/End: Original strand, 11013745 - 11013792
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggatt 870  Q
    ||||||||||| | ||||||||||||||| ||||||||| ||||||||    
T  11013745 tgggagacaagtggttgtctacatggaagaagtgctgatcgtgggatt 11013792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 823 - 870
Target Start/End: Complemental strand, 33103273 - 33103226
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggatt 870  Q
    ||||||||||| | ||||||||||||||| |||| |||||||||||||    
T  33103273 tgggagacaagtggttgtctacatggaagaagtgttgattgtgggatt 33103226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 674 - 756
Target Start/End: Complemental strand, 17615766 - 17615684
Alignment:
Q  674 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttc 756  Q
    ||||||||  ||| ||||| ||| ||||||||||| |||||||||| ||||| |||||   |||||||||| ||| |||||||    
T  17615766 ttgttagcatgtaatttcaacagactcatttaatgcggtcaacattagttgacttttatctttgcaggaatcgaaatcttttc 17615684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 70; Significance: 4e-31; HSPs: 2)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 682 - 815
Target Start/End: Original strand, 5337 - 5470
Alignment:
Q  682 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttcaaagaga 781  Q
    |||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||| || ||||| ||||| |||||  ||| | |||| | ||||    
T  5337 tggtattttcaccagcctcatttattgtggtcaactttagttgacttttactcttgcaggtatcgaagttttttcatcaattgaagaattttcgacgaga 5436  T
Q  782 tgttggacttagcattgaaaagtctcgaagcctt 815  Q
    |||||||||||||||  |||||||||||||||||    
T  5437 tgttggacttagcatcaaaaagtctcgaagcctt 5470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 881
Target Start/End: Original strand, 5582 - 5640
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||||| ||||||| |||| |||| |||||||| ||||| ||||    
T  5582 tgggagacaagcggttgtctatatggaaggagtgttgatcgtgggattagtttcattcc 5640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 662 - 755
Target Start/End: Complemental strand, 2545864 - 2545771
Alignment:
Q  662 ttggggggcaatttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt 755  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||| ||||||||||    
T  2545864 ttgggaggcaatttgttagctggtaatttcaccagcctcatttaatgtggtcaacattacttgacttttactcttgcaggaatcgaagtctttt 2545771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 674 - 815
Target Start/End: Complemental strand, 20146371 - 20146231
Alignment:
Q  674 ttgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagttt 773  Q
    ||||||| ||||||||||| |||| | || |||||||||||||||| ||||| ||||||| ||  |||||| ||||  ||| ||||  | ||||||||||    
T  20146371 ttgttagatggtattttcatcagcgttatgtaatgtggtcaacattagttgacttttactgttaaaggaatcgaagcttttccttctgttaaaggagttt 20146272  T
Q  774 caaagagatgttggacttagcattgaaaagtctcgaagcctt 815  Q
    ||| ||||||||||| |||||| | |||||||| ||||||||    
T  20146271 caacgagatgttggagttagca-taaaaagtcttgaagcctt 20146231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 677 - 819
Target Start/End: Original strand, 14986744 - 14986882
Alignment:
Q  677 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 775  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  14986744 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 14986838  T
Q  776 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 819  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  14986839 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 14986882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 677 - 819
Target Start/End: Original strand, 15416355 - 15416493
Alignment:
Q  677 ttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtctttt-cttcaatcaaaggagtttca 775  Q
    ||||||||||||||||||||||||||||     |||||||||| ||||| ||||||||||||||||||  |||| |||| || |||| |||| |||||||    
T  15416355 ttagctggtattttcaccagcctcattt-----ggtcaacattagttgacttttactcttgcaggaatccaagtatttttctccaataaaagaagtttca 15416449  T
Q  776 aagagatgttggacttagcattgaaaagtctcgaagccttaaag 819  Q
    | |||||||| |||||  |||  ||| ||| | |||||||||||    
T  15416450 acgagatgttagacttcacatgaaaatgtcccaaagccttaaag 15416493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 675 - 794
Target Start/End: Original strand, 4173104 - 4173222
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 774  Q
    |||||||||||||||||||| |||| |||||||||| |||||||| ||||| || || | ||||||| ||  |||| ||| ||||||||||| ||| |||    
T  4173104 tgttagctggtattttcacctgccttatttaatgtgttcaacattagttgacttataattttgcaggtatcaaagtatttccttcaatcaaaagag-ttc 4173202  T
Q  775 aaagagatgttggacttagc 794  Q
     | |||||||||||| ||||    
T  4173203 gacgagatgttggacctagc 4173222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 20146119 - 20146061
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||| ||||||||||    
T  20146119 tgggagacaagcggttgtcttcatggaaggagtgctgatcgtgggattagtttctttcc 20146061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 823 - 880
Target Start/End: Complemental strand, 2547215 - 2547158
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttc 880  Q
    ||||||||||||| ||||||||||||||| |||| |||| |||||||| |||||||||    
T  2547215 tgggagacaagcggttgtctacatggaaggagtgttgatcgtgggattagtttctttc 2547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 673 - 709
Target Start/End: Complemental strand, 2563233 - 2563197
Alignment:
Q  673 tttgttagctggtattttcaccagcctcatttaatgt 709  Q
    |||||||||||||| ||||||||||||||||||||||    
T  2563233 tttgttagctggtaatttcaccagcctcatttaatgt 2563197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 881
Target Start/End: Original strand, 14986989 - 14987047
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  ||||||||||    
T  14986989 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttcc 14987047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 881
Target Start/End: Original strand, 15416600 - 15416658
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||||||||||||| |||| |||| ||| |||  ||||||||||    
T  15416600 tgggagacaagcggttgtctacatggaaggagtgatgatcgtgagataagtttctttcc 15416658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795 (Bit Score: 65; Significance: 4e-28; HSPs: 2)
Name: scaffold0795
Description:

Target: scaffold0795; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 675 - 819
Target Start/End: Original strand, 5725 - 5869
Alignment:
Q  675 tgttagctggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaagtcttttcttcaatcaaaggagtttc 774  Q
    |||||||||||||||| |||| |||||||||||| |||||||||| | ||| ||||  |||||||||||| |||| |||||| ||| | |||||||||||    
T  5725 tgttagctggtatttttaccaacctcatttaatgcggtcaacattaggtgactttttttcttgcaggaatcgaagccttttcctcagttaaaggagtttc 5824  T
Q  775 aaagagatgttggacttagcattgaaaagtctcgaagccttaaag 819  Q
    || |||||||| ||||||||||  ||||| || |||||| |||||    
T  5825 aacgagatgttagacttagcatgaaaaagccttgaagccctaaag 5869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0795; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 823 - 881
Target Start/End: Original strand, 5971 - 6029
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||| ||||||||||  ||||||||| |||||||| ||||||||||    
T  5971 tgggagacaagcggttgcctacatggaacgagtgctgatcgtgggattagtttctttcc 6029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 6e-24; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 578 - 731
Target Start/End: Original strand, 373696 - 373847
Alignment:
Q  578 tgacatcatgctttgaaatacttagcgttttctcaaaaatgtcaattctctccgttgattatattccgtcgaaaatggcatttcttggggggcaatttgt 677  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||| | |  |  |  ||  |||||||||||| ||| ||||||||||||||||    
T  373696 tgacatcatgctttgaaatacttagagtttt-tcaaaaatgacaattctcttcttcaaaaaatttaagtcgaaaatggctttt-ttggggggcaatttgt 373793  T
Q  678 tagctggtattttcaccagcctcatttaatgtggtcaacattggttgattttta 731  Q
    ||| ||||  ||| |||| ||||||||||||||||||||||| ||||| |||||    
T  373794 tagttggttattttaccaacctcatttaatgtggtcaacattagttgactttta 373847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 823 - 870
Target Start/End: Original strand, 374041 - 374088
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggatt 870  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||| ||||    
T  374041 tgggagacaagcggttgtctacatggaagaagtgctgatcgtgagatt 374088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 682 - 794
Target Start/End: Complemental strand, 5388 - 5276
Alignment:
Q  682 tggtattttcaccagcctcatttaatgtggtcaacattggttgatttttactctt-gcaggaattgaagtcttttcttcaatcaaaggagtttcaaagag 780  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| ||||| |||| ||||||||  |||||||||||||||   |||||| ||||| |||    
T  5388 tggtaatttcaccagcatcatttaatgtggtcaacattagttgactttta-tcttcgcaggaatcaaagtcttttcttcaacttaaggagcttcaacgag 5290  T
Q  781 atgttggacttagc 794  Q
    ||||||||||||||    
T  5289 atgttggacttagc 5276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 685 - 796
Target Start/End: Complemental strand, 21337 - 21225
Alignment:
Q  685 tattttcaccagcctcatttaatgtggtcaacattggttgatttttactcttgcaggaattgaag-tcttttcttcaatcaaaggagtttcaaagagatg 783  Q
    ||||||||||| ||||||||||| || |||||||| ||||| ||||| | ||||| |||| ||||   |||||||||| | || ||||||| | ||||||    
T  21337 tattttcaccatcctcatttaatatgatcaacatttgttgacttttatttttgcaagaatcgaagcatttttcttcaaccgaaagagtttcgacgagatg 21238  T
Q  784 ttggacttagcat 796  Q
    ||||||| |||||    
T  21237 ttggactaagcat 21225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 823 - 881
Target Start/End: Complemental strand, 21097 - 21039
Alignment:
Q  823 tgggagacaagcgtttgtctacatggaagtagtgctgattgtgggattcgtttctttcc 881  Q
    ||||||||||||| ||||| ||||||||| |||| |||| |||||||| ||||||||||    
T  21097 tgggagacaagcggttgtcaacatggaaggagtgttgatcgtgggattagtttctttcc 21039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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