View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_high_10 (Length: 502)
Name: NF12194_high_10
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 52546992 - 52547473
Alignment:
| Q |
1 |
tgtgacagaaataaaacatatgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52546992 |
tgtgacagaaataaaacatatgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactga |
52547091 |
T |
|
| Q |
101 |
tgaacttccacttacagtgggaagttttaaggtttcacccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcattatttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52547092 |
tgaacttccacttacagtgggaagttttaaggtttcacccttgagaccaatctgaccagcaacaaaattgaaatggaatttcttaatgttgcattatttc |
52547191 |
T |
|
| Q |
201 |
cgaaaagcgaaatcacatataaaaatgaatgatacacatataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttcttagtga |
300 |
Q |
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| T |
52547192 |
cgaaaagcgaaatcacatataaaaatgaatgatacacatataatgcttcaacacaaaaataaacaagaaattatattatgcttaaacattttcttagtga |
52547291 |
T |
|
| Q |
301 |
tgacacaagtaagtatcaacaacatttttcgattttgaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaaccttgtaaga |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52547292 |
tg--acaagtaagtatcaacaacatttttcgattttgaaaaacattgtgcaatgtttcttctaccaactgaaacattgctaggcaacaaaccttgtaaga |
52547389 |
T |
|
| Q |
401 |
ccatttctgttgtgacaagtctctggtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccatgtctc |
484 |
Q |
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| T |
52547390 |
ccatttctgttgtgacaagtctctggtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccatgtctc |
52547473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 481
Target Start/End: Complemental strand, 5232540 - 5232446
Alignment:
| Q |
387 |
caaaccttgtaagaccatttctgttgtgacaagtctctggtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccatgt |
481 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||| | ||||||||| | | | ||||||||||||||||| |||||||||| |
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| T |
5232540 |
caaaccttgtaagaccatttctgccaagacaagtctcttgtcccctcatctagacccttcaatcttactgggcctaacaccccaacattccatgt |
5232446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 5232788 - 5232740
Alignment:
| Q |
38 |
taccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgt |
86 |
Q |
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| T |
5232788 |
taccttgtaccatgtcaaaggttgttttttagccaatgatgatccttgt |
5232740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 17128472 - 17128380
Alignment:
| Q |
387 |
caaaccttgtaagaccatttctgttgtgacaagtctctggtcccctcgtttagacccttgagtgtgactgggcctaacaccccggcattccat |
479 |
Q |
| |
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|||||||||||||||||||| |||| ||||| |||| |||||||||||||||||||| | || |||||||||||||| || |||||||| |
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| T |
17128472 |
caaaccttgtaagaccatttttgtttagacaaatctcgtgtcccctcgtttagacccttcaaagttactgggcctaacacaccaacattccat |
17128380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 17128727 - 17128594
Alignment:
| Q |
21 |
tgttgaaaatttaatcataccttgtaccatgtcaaaggttgtcttttagccaatgatggtccttgtacccattgaactgatgaacttccacttacagtgg |
120 |
Q |
| |
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| T |
17128727 |
tgttgaaaactcattcttaccttgtaccatgtcaaaggttgttttttagataaaaatgatccttgtgtccatttaacagaagaacttccacttgtggtat |
17128628 |
T |
|
| Q |
121 |
gaagttttaaggtttcacccttgagaccaatctg |
154 |
Q |
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|||| ||||||| |||||| || || |||||||| |
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| T |
17128627 |
gaaggtttaaggattcacctttcagtccaatctg |
17128594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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