View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_high_12 (Length: 467)
Name: NF12194_high_12
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 32 - 449
Target Start/End: Original strand, 43065296 - 43065717
Alignment:
| Q |
32 |
aaactctcacaattcttattccttgctagggtttcagcag-----cgcagccttttcttcttcgtctcaaggtaacaaaccaactctaaatccttcaatt |
126 |
Q |
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| T |
43065296 |
aaactctcacaattctcattccttgctagggtttcagcagcgcagcgcagccttttctccttcgtctcaaggtaacaaaccaactctaaatccttcaatt |
43065395 |
T |
|
| Q |
127 |
tcttttcttatcaatcgatcgatcaatgtattcttatcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacatta |
226 |
Q |
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| T |
43065396 |
tcttttcttatcaatcgatcgatcaatgtattcttatcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacatta |
43065495 |
T |
|
| Q |
227 |
taatgcttttgtttttctattcatgcacgtgtttaatcgcaattctgaatcctatcgnnnnnnnatttatgaatcgctagttttaaaatagtcgatggtt |
326 |
Q |
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| T |
43065496 |
taatgcttttgtttttcgattcatgcacatgtttaatcgcaattctgaatcctatcgtttttttatttatgaatcgctagttttaaaatagttgatggtt |
43065595 |
T |
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| Q |
327 |
ctgtgttctcatatatacttcattcttgcattttaacattaccatgccattattatattatcgtaatgnnnnnnnnnagttgttattattacatacttgt |
426 |
Q |
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| T |
43065596 |
ctgtgttctcatatatacttcattcttgcattttaacattaccatgccattattatattatcgtaatg-ttttttttagttgttattattacatacttgt |
43065694 |
T |
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| Q |
427 |
ttgtttggtattcaattatttgg |
449 |
Q |
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| T |
43065695 |
ttgtttggtattcaattatttgg |
43065717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 43047583 - 43047402
Alignment:
| Q |
57 |
ctagggtttcagcagcgcagccttttcttcttcgtctcaaggtaacaaaccaactctaaatccttcaatttcttttcttatcaatcgatcgatcaatgta |
156 |
Q |
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| T |
43047583 |
ctagggtttccgcagcgcagccttttctccttcgtctcaaggtaacaaaccaaccctaaatccttcaatttcttttcttatcaatcgatcgatcaatgta |
43047484 |
T |
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| Q |
157 |
ttcttatcatcatcgattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
243 |
Q |
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| T |
43047483 |
ttcata-----atcaattcattcataggttattcgtgttgtttactttacatctgcgattgattacattataatgcttttgtttttc |
43047402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 334 - 384
Target Start/End: Complemental strand, 43047289 - 43047239
Alignment:
| Q |
334 |
ctcatatatacttcattcttgcattttaacattaccatgccattattatat |
384 |
Q |
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|||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
43047289 |
ctcatacattcttcattcatgcattttaacattaccatgccattattatat |
43047239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 42159107 - 42159055
Alignment:
| Q |
186 |
tattcgtgttgtttactttacatctgcgattgattacattataatgcttttgt |
238 |
Q |
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||||||||| |||||||||||||| ||| |||||||| ||||||||||||| |
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| T |
42159107 |
tattcgtgtactttactttacatctttgatcgattacataataatgcttttgt |
42159055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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