View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_high_17 (Length: 382)
Name: NF12194_high_17
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 12 - 363
Target Start/End: Original strand, 51044853 - 51045202
Alignment:
| Q |
12 |
cacagactataactaaacgtaagcagaggaaagcaaatacatacatcgcgataggtggttgtgttctttgcacgttcaccatggtaacgagaatcaaccg |
111 |
Q |
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| T |
51044853 |
cacagactataactaaacgtaagcagaggaaagcaaatacatacatcgcgataggtggttgcgttctttgcacgttcaccatggtaacgagaatcaaccg |
51044952 |
T |
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| Q |
112 |
aaattgttatatatcctcgcgaagcatatgcctgaaacacgaagaccaaaaatggaaaccaaagccccnnnnnnnttgacgattattataagctaatgaa |
211 |
Q |
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| T |
51044953 |
aaattgttatatatcctcgcgaagcatatgcctgaaacacgaagaccaaaaatggaaaccaaagcc--aaaaaaattgacgattattataagctaatgaa |
51045050 |
T |
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| Q |
212 |
tcatgataaatcatatttcataggactagaacaaaatgagtgatgattgaagctgagaaaatgtagtaagcaacctcaagcaacggacgcagatattctt |
311 |
Q |
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| T |
51045051 |
tcatgataaatcatatttcataggagtagaacaaaatgagtgatgattgaagctgagaaaatgtagtaagcaacctcaagcaacggacgcagatattctt |
51045150 |
T |
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| Q |
312 |
tatacttgtttgtactgtgaaggaaaacaactgcaggtcttcttgtctgctt |
363 |
Q |
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| T |
51045151 |
tatacttgtttgtactgtgaaggaaaacaactgcaggtcttcttgtctgctt |
51045202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 51036991 - 51037119
Alignment:
| Q |
47 |
aatacatacatcgcgataggtggttgtgttctttgcacgttcaccatggtaacgagaatcaaccgaaattgttatatatcctcgcgaagcatatgcctga |
146 |
Q |
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| T |
51036991 |
aatacatacatcacaataggtgtttatgtccttcgcacgttcaccatggtaacgagaatcaactgaaattgctatatatccccgcgaagcatatgcctga |
51037090 |
T |
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| Q |
147 |
aacacgaagaccaaaaatggaaaccaaag |
175 |
Q |
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| T |
51037091 |
aacaagaagcacaaaaatagaaaccaaag |
51037119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 219 - 363
Target Start/End: Original strand, 51037157 - 51037302
Alignment:
| Q |
219 |
aaatcatatttcataggactagaacaaaatgagtgatgattgaagctgagaaaatgtagta-agcaacctcaagcaacggacgcagatattctttatact |
317 |
Q |
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||||| |||||||||||| | |||||||||||| |||| |||||| | ||||||| ||| | |||||||||||| ||||||||| ||||||||| | |
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| T |
51037157 |
aaatcttatttcataggagttgaacaaaatgagcaatgagtgaagcagtgaaaatgcggtataataacctcaagcaatggacgcagagattctttatgcg |
51037256 |
T |
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| Q |
318 |
tgtttgtactgtgaaggaaaacaactgcaggtcttcttgtctgctt |
363 |
Q |
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| T |
51037257 |
aatttgtactgtgaaggaaaacaactgcaggtcttcttgtctgctt |
51037302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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