View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_high_19 (Length: 373)
Name: NF12194_high_19
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 369
Target Start/End: Complemental strand, 49993305 - 49992956
Alignment:
| Q |
21 |
ttcagtaacttcactctcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctggtggattagcagga |
120 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
49993305 |
ttcagtaacttcactttcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctggaggattagcagga |
49993206 |
T |
|
| Q |
121 |
cagtataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993205 |
cagtataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttt |
49993106 |
T |
|
| Q |
221 |
tcaaacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttt |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49993105 |
tcaaacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttt |
49993006 |
T |
|
| Q |
321 |
tgttatgcttctttgtactgctgtttctcttgtggggtct-gtgctgctc |
369 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
49993005 |
tgttatgcttctttgtactgctgtttctcttgtggggtctagtgctgctc |
49992956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 25798148 - 25797987
Alignment:
| Q |
21 |
ttcagtaacttcactctcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctggtggattagcagga |
120 |
Q |
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|||||| |||||| | |||||||||||||| |||||||| | | ||| ||||||||||| | ||||| ||||||||||| |||||| | |||||| |
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| T |
25798148 |
ttcagttacttcaatttcagtgacagttggactaatgaatttgatcggttgttggtttggttgtgtgccaacttgtcatggtgccggtggactcgcagga |
25798049 |
T |
|
| Q |
121 |
cagtataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggt |
182 |
Q |
| |
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|| |||||||||||||| || |||||||||||||||||| |||||||||| | ||||||||| |
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| T |
25798048 |
caatataaatttggtggaagaagtggagggtgtgtggcacttcttggtgcaggaaaattggt |
25797987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 21 - 323
Target Start/End: Original strand, 1875668 - 1875970
Alignment:
| Q |
21 |
ttcagtaacttcactctcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctggtggattagcagga |
120 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||| |||||| | | ||| ||||||||||||| ||||||| || ||||||||||||||| |||||||| |
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| T |
1875668 |
ttcagtcacttcactttcagtgacagttgggttgatgaatttggttggttgttggtttggtgcaatgccatcttgccatggtgctggtggactagcagga |
1875767 |
T |
|
| Q |
121 |
cagtataaatttggtgggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttt |
220 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||| ||||| || || || |||| ||| ||||| || ||| |
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| T |
1875768 |
cagtataaatttggtggaaggagtggagggtgtgtggcacttcttggtgttgcaaaattggtattgggattggtgttaggaacttctttggcacacattt |
1875867 |
T |
|
| Q |
221 |
tcaaacagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttt |
320 |
Q |
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| | |||||||| || || |||||||| || ||| | ||||||||||| ||||| | |||||| | |||||||||||||| |||||| ||||| || |
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| T |
1875868 |
taatgcagtttccagttgggattttaggtgttttgcttttgtttgctggtcttgaacttgctatgtgtgctagggatatgaatagcaaagaagattcctt |
1875967 |
T |
|
| Q |
321 |
tgt |
323 |
Q |
| |
|
||| |
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|
| T |
1875968 |
tgt |
1875970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 37 - 323
Target Start/End: Original strand, 1808080 - 1808366
Alignment:
| Q |
37 |
tcagtgacagttgggttaatgaatcttttgggtggttggtttggtgctatgccatgctgtcatggtgctggtggattagcaggacagtataaatttggtg |
136 |
Q |
| |
|
|||||||||||||| |||||||| | | ||| ||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||| | |
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|
| T |
1808080 |
tcagtgacagttggactaatgaatttagttggttcttggtttggtgctgtgccaacttgtcatggtgctggaggactagcaggacagtataaatttggag |
1808179 |
T |
|
| Q |
137 |
ggaggagtggagggtgtgtggcaattcttggtgctgcaaaattggttttgggttttgttttgggaagttcattggctcattttttcaaacagtttcctgt |
236 |
Q |
| |
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| ||||||||||||||||| ||| |||||||| |||||||||||| ||||| || ||||| |||| ||| ||||| || |||| |||| ||||| || |
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| T |
1808180 |
gaaggagtggagggtgtgttgcacttcttggttttgcaaaattggtattgggattggttttaggaacttctttggcacacattttgcaacaatttccagt |
1808279 |
T |
|
| Q |
237 |
gggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgt |
323 |
Q |
| |
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|| |||||||| ||||| | ||||||||||| |||||| | |||||| | |||||||||||||| ||||| ||||||||||| |
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| T |
1808280 |
tgggattttaggtgtgttacttttgtttgctggtattgaacttgctatgtgtgctagggatatgaatagtaaagaagattcttttgt |
1808366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 2862338 - 2862460
Alignment:
| Q |
226 |
cagtttcctgtgggaattttaggggtgttgttgttgtttgctgggattgaattagctatggcttgtagggatatgaataacaaagaggattcttttgtta |
325 |
Q |
| |
|
||||||||| | || || |||||||||||| | |||||||||||||||||||| |||||||||| || |||||||||| ||| | || |||||| ||| |
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| T |
2862338 |
cagtttcctattggcatattaggggtgttgcttttgtttgctgggattgaattggctatggcttctaaagatatgaatagtaaacaagagtcttttatta |
2862437 |
T |
|
| Q |
326 |
tgcttctttgtactgctgtttct |
348 |
Q |
| |
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|| || ||||| ||||||||||| |
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| T |
2862438 |
tgtttgtttgtgctgctgtttct |
2862460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 2862183 - 2862258
Alignment:
| Q |
71 |
gttggtttggtgctatgccatgctgtcatggtgctggtggattagcaggacagtataaatttggtgggaggagtgg |
146 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||||||||| || || ||||||| ||||| || |||||||| |
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| T |
2862183 |
gttggtttggtgctatgccttgttgccatggagctggtggattggctggtcagtataggtttggaggtaggagtgg |
2862258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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