View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12194_high_22 (Length: 317)

Name: NF12194_high_22
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12194_high_22
NF12194_high_22
[»] chr1 (5 HSPs)
chr1 (9-204)||(235229-235424)
chr1 (31-300)||(8814168-8814440)
chr1 (19-260)||(251252-251484)
chr1 (31-257)||(246905-247122)
chr1 (9-104)||(231597-231692)
[»] chr6 (13 HSPs)
chr6 (154-239)||(7012987-7013072)
chr6 (154-239)||(9170969-9171054)
chr6 (31-124)||(7029851-7029944)
chr6 (154-226)||(7029980-7030052)
chr6 (11-103)||(7041514-7041606)
chr6 (154-224)||(212966-213036)
chr6 (31-124)||(7025794-7025887)
chr6 (31-103)||(7012858-7012930)
chr6 (31-103)||(7046877-7046949)
chr6 (156-239)||(7025925-7026008)
chr6 (168-239)||(9159374-9159445)
chr6 (31-124)||(9170855-9170948)
chr6 (31-124)||(9159480-9159573)
[»] chr5 (2 HSPs)
chr5 (154-251)||(33541810-33541907)
chr5 (154-228)||(18571269-18571343)
[»] chr3 (5 HSPs)
chr3 (154-240)||(9494695-9494784)
chr3 (31-104)||(9343883-9343956)
chr3 (31-104)||(9448352-9448425)
chr3 (31-91)||(41985666-41985726)
chr3 (31-96)||(9695629-9695694)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 204
Target Start/End: Original strand, 235229 - 235424
Alignment:
Q  9 agcagagaacgaacatagcaatcccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgtta 108  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  235229 agcagaaaacgaacatagcaaccccaagaagaaaactctatcccctaaatttgccaacttcacccacttcttctccttttcattaagcttaaacacgtta 235328  T
Q  109 atccttgcacgatcataatcatcagcatcttcatgaatctcatggtcataaacatctgctaacaacaaatcaccgtcgctctccactaagaattta 204  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  235329 atccttgcacgatcataatcatcagcatcttcatcaatctcatggtcataaacatctgctaacaacaaatcaccgtcgctctccactaagaattta 235424  T

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Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 31 - 300
Target Start/End: Complemental strand, 8814440 - 8814168
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgttaatcctt---------gcacgat 121  Q
    ||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| || ||||||          |||||||    
T  8814440 cccaaaaacaaaactctatcccctaaattcgccaacttcacccacttcttctccttttcgttaagcttaaacatgtcaatcctgccaatcctggcacgat 8814341  T
Q  122 cataatcatcagcatcttcatgaatctcatggtcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaac 221  Q
    ||||||||| | ||||      ||| ||| |||  |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| ||| |||     
T  8814340 cataatcataatcatc------aatatcacggttgtaaacatctgctaacaacaaatcacccttgctctccactaggaatttaatatccccgccagcaag 8814247  T
Q  222 caaagatacagcaactaaccggacagtggaatcatcaggacaaacagtaacagtccgcccagttttatcaaccacataa 300  Q
    ||||||| |||| |||||| | ||||| || ||||| || | ||||||||||||| | |||||||| || |||||||||    
T  8814246 caaagattcagccactaactgaacagttgagtcatccggtccaacagtaacagtctgtccagttttgtctaccacataa 8814168  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 251484 - 251252
Alignment:
Q  19 gaacatagcaatcccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgttaatccttgcac 118  Q
    ||||||||| | |||||||| |||||||||||||||| ||| |||||||| | ||||||||| |||||||||||||||||||||||||||||||||        
T  251484 gaacatagccaccccaagaacaaaactctatcccctatattcgccaactttacccacttcttttccttttcattaagcttaaacacgttaatcctt---- 251389  T
Q  119 gatcataatcatcagcatcttcatgaatctcatggtcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccacc 218  Q
     || ||  ||||||| | | |||  || |||  | |  ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||    
T  251388 -at-atgttcatcaggagcatca--aacctcc-gctggtaaacatctgctaacaacaaatcactgtcgctctccaccaagaatttaatatctccaccacc 251294  T
Q  219 aaccaaagatacagcaactaaccggacagtggaatcatcagg 260  Q
    ||||||||||  ||| |||||| ||||||||||||| |||||    
T  251293 aaccaaagattgagccactaactggacagtggaatcctcagg 251252  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 246905 - 247122
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgttaatccttgcacgatcataatcat 130  Q
    |||||||| |||||| |||| |||||||| |||||||||| ||| ||||||||| || ||||||||||||||| || ||||||| |||          ||    
T  246905 cccaagaacaaaactgtatctcctaaattagccaacttcacccatttcttctcccttgcattaagcttaaacaagtcaatccttacac----------at 246994  T
Q  131 cagc-atcttcatgaatctcatggtcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagata 229  Q
    | || ||| |||| || |  ||| || |||||||||  ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||     
T  246995 ccgcgatcatcatcaaacctatgttcgtaaacatctattaacaacaaatcacccttgctctccactaagaatttaatatctccaccaccaaccaaagatt 247094  T
Q  230 cagcaactaaccggacagtggaatcatc 257  Q
    ||||||||||||||||||||||||||||    
T  247095 cagcaactaaccggacagtggaatcatc 247122  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 231597 - 231692
Alignment:
Q  9 agcagagaacgaacatagcaatcccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacac 104  Q
    |||||| || ||||||||  | |||||||| |||||| ||||||||||||| |||||||||| ||||||| |||||||| |||| |||||||||||    
T  231597 agcagaaaatgaacatagggaccccaagaacaaaactatatcccctaaattagccaacttcacccacttcatctcctttgcattgagcttaaacac 231692  T

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Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 7012987 - 7013072
Alignment:
Q  154 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 239  Q
    ||||||||||||||||||||||||||  | |||||||||||||||||||| || ||||| ||||||||||||| | |||| |||||    
T  7012987 tcataaacatctgctaacaacaaatcctcctcgctctccactaagaatttcatgtccccgccaccaaccaaaggttcagccactaa 7013072  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 239
Target Start/End: Original strand, 9170969 - 9171054
Alignment:
Q  154 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 239  Q
    |||||||| || |||||||||||||| || |||||||||||||||||||| || | ||||||||||||||||| | ||||||||||    
T  9170969 tcataaacgtccgctaacaacaaatctccctcgctctccactaagaatttcatgttcccaccaccaaccaaaggttcagcaactaa 9171054  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 7029851 - 7029944
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgttaatccttgcacgatcat 124  Q
    |||||||| ||||| |||||||| ||| | | |||||||| ||||||||||||||| ||||||||||||||||  | ||||||| |||||||||    
T  7029851 cccaagaacaaaaccctatccccgaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacacgatcat 7029944  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 226
Target Start/End: Original strand, 7029980 - 7030052
Alignment:
Q  154 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaag 226  Q
    ||||||||||| |||||||||||||| || |||||||||||||||||||| | ||  ||||||||||||||||    
T  7029980 tcataaacatccgctaacaacaaatccccctcgctctccactaagaatttcacatttccaccaccaaccaaag 7030052  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 7041514 - 7041606
Alignment:
Q  11 cagagaacgaacatagcaatcccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaaca 103  Q
    |||||||||||||||    ||||||||| ||||| |||||||||||| | | |||||||| ||||||||||||||| |||||||| |||||||    
T  7041514 cagagaacgaacatacttctcccaagaacaaaaccctatcccctaaactagtcaacttcacccacttcttctccttctcattaagtttaaaca 7041606  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 224
Target Start/End: Complemental strand, 213036 - 212966
Alignment:
Q  154 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaa 224  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||| ||  | |||||| |||||||    
T  213036 tcataaacatctactaacaacaaatcaccctcgctctccactaagaatttcatgcctccaccatcaaccaa 212966  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 7025794 - 7025887
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgttaatccttgcacgatcat 124  Q
    |||||||| ||||| ||||| |||||| | | |||||||| ||||||||||||||| ||||||||||||||||  | ||||||| ||| |||||    
T  7025794 cccaagaacaaaaccctatctcctaaactcgtcaacttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacacaatcat 7025887  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 7012858 - 7012930
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaaca 103  Q
    |||||||| ||||  ||||| |||||| ||| |||||||| ||||||||||||||| ||||||||||||||||    
T  7012858 cccaagaacaaaatcctatctcctaaacttgtcaacttcacccacttcttctccttctcattaagcttaaaca 7012930  T

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Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 7046877 - 7046949
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaaca 103  Q
    |||||||| |||||| ||||||||||| | |  ||||||| ||||||||||||||| ||||||||||||||||    
T  7046877 cccaagaacaaaactttatcccctaaactcgttaacttcacccacttcttctccttctcattaagcttaaaca 7046949  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 7025925 - 7026008
Alignment:
Q  156 ataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 239  Q
    ||||||||| |||||||||||||| || |||||||||||||||||||| || ||||| || |||| ||||| | |||| |||||    
T  7025925 ataaacatccgctaacaacaaatccccctcgctctccactaagaatttcatgtccccgccgccaatcaaaggttcagccactaa 7026008  T

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Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 9159445 - 9159374
Alignment:
Q  168 taacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaa 239  Q
    |||||||||||| || |||||||||||||||||||| || | ||||||||||||||||| | |||| |||||    
T  9159445 taacaacaaatctccctcgctctccactaagaattttatgttcccaccaccaaccaaaggttcagccactaa 9159374  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 124
Target Start/End: Original strand, 9170855 - 9170948
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgttaatccttgcacgatcat 124  Q
    |||||||| ||||| |||||||||||| | |  || |||| ||||||||||||||| ||||||||||||||||  | ||||||| || ||||||    
T  9170855 cccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcattaagcttaaacaaatcaatccttacaggatcat 9170948  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 124
Target Start/End: Complemental strand, 9159573 - 9159480
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacacgttaatccttgcacgatcat 124  Q
    |||||||| ||||| |||||||||||| | |  || |||| ||||||||||||||| || |||||||||||||  | ||||||| || ||||||    
T  9159573 cccaagaacaaaaccctatcccctaaactcgttaatttcacccacttcttctccttctcgttaagcttaaacaaatcaatccttacaggatcat 9159480  T

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Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 251
Target Start/End: Original strand, 33541810 - 33541907
Alignment:
Q  154 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagatacagcaactaaccggacagtgga 251  Q
    |||||||||||  |||||||||||||||| | |||||||||||||||||| |  || |||||||||||||||||| |||| |||||| | ||||||||    
T  33541810 tcataaacatccactaacaacaaatcacccttgctctccactaagaatttgacgtctccaccaccaaccaaagattcagccactaactgaacagtgga 33541907  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 228
Target Start/End: Original strand, 18571269 - 18571343
Alignment:
Q  154 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccaccaaccaaagat 228  Q
    |||||||| || |||||||||| ||| || ||||||||||| |||||||| || | ||||||| |||||||||||    
T  18571269 tcataaacgtcagctaacaacagatcgccctcgctctccaccaagaatttcatgttcccaccaacaaccaaagat 18571343  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 9494784 - 9494695
Alignment:
Q  154 tcataaacatctgctaacaacaaatcaccgtcgctctccactaagaatttaatatccccaccacc---aaccaaagatacagcaactaac 240  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||||||| || ||||| |||||   |||||||||| |||| ||||||    
T  9494784 tcataaacatctactaacaacaaatcaccgtcactctcgactaagaatttgatgtcccccccaccagaaaccaaagattcagccactaac 9494695  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 9343883 - 9343956
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacac 104  Q
    |||||||| ||||| |||||||||||| |||  ||||||| ||||||||||||| | |||| ||||||||||||    
T  9343883 cccaagaacaaaacactatcccctaaagttgttaacttcacccacttcttctccatctcatcaagcttaaacac 9343956  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 9448352 - 9448425
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagcttaaacac 104  Q
    |||||||| ||||| |||||||||||| |||  ||||||| ||| ||||||||||| |||| ||||||||||||    
T  9448352 cccaagaacaaaacactatcccctaaagttgttaacttcacccatttcttctccttctcataaagcttaaacac 9448425  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 91
Target Start/End: Original strand, 41985666 - 41985726
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcat 91  Q
    |||||||| |||||||||||||||||| | |||||||| | ||| ||||||||||| ||||    
T  41985666 cccaagaacaaaactctatcccctaaactcgccaacttgacccatttcttctccttctcat 41985726  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 9695694 - 9695629
Alignment:
Q  31 cccaagaagaaaactctatcccctaaatttgccaacttcagccacttcttctccttttcattaagc 96  Q
    ||||| || ||||| |||||||||||||| | |||||| | ||||||||||||||| |||| ||||    
T  9695694 cccaaaaacaaaaccctatcccctaaattggtcaacttgacccacttcttctccttctcatcaagc 9695629  T

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