View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12194_high_3 (Length: 699)

Name: NF12194_high_3
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12194_high_3
NF12194_high_3
[»] chr7 (18 HSPs)
chr7 (10-481)||(3677530-3678001)
chr7 (479-683)||(3676267-3676474)
chr7 (135-364)||(12975595-12975824)
chr7 (26-135)||(339231-339340)
chr7 (26-135)||(351638-351747)
chr7 (16-110)||(5849406-5849501)
chr7 (26-135)||(28421158-28421267)
chr7 (26-110)||(20238827-20238911)
chr7 (26-135)||(3811368-3811477)
chr7 (26-135)||(3817510-3817619)
chr7 (61-110)||(5979408-5979457)
chr7 (479-526)||(3684682-3684729)
chr7 (479-526)||(3695958-3696005)
chr7 (59-110)||(35148241-35148292)
chr7 (525-562)||(35198636-35198673)
chr7 (46-110)||(15843823-15843887)
chr7 (46-110)||(15860932-15860996)
chr7 (59-135)||(18656885-18656961)
[»] chr5 (13 HSPs)
chr5 (135-364)||(29273258-29273487)
chr5 (47-135)||(19066332-19066420)
chr5 (26-135)||(12686378-12686487)
chr5 (26-135)||(12692480-12692589)
chr5 (59-135)||(30772133-30772209)
chr5 (26-110)||(7389746-7389830)
chr5 (59-135)||(14610020-14610096)
chr5 (59-135)||(19060003-19060079)
chr5 (59-135)||(30384618-30384694)
chr5 (26-110)||(32094420-32094504)
chr5 (26-110)||(32097221-32097305)
chr5 (25-97)||(41297172-41297244)
chr5 (57-105)||(20500020-20500068)
[»] chr8 (12 HSPs)
chr8 (135-364)||(29229622-29229852)
chr8 (26-110)||(5542359-5542443)
chr8 (26-110)||(32890765-32890849)
chr8 (26-110)||(32896889-32896973)
chr8 (59-135)||(42033652-42033728)
chr8 (26-110)||(42993202-42993286)
chr8 (26-103)||(36818855-36818932)
chr8 (26-122)||(10699894-10699990)
chr8 (59-135)||(14417792-14417868)
chr8 (59-110)||(22219959-22220010)
chr8 (26-135)||(9935132-9935239)
chr8 (26-110)||(10705714-10705798)
[»] chr4 (12 HSPs)
chr4 (135-364)||(6800718-6800948)
chr4 (193-356)||(27067554-27067717)
chr4 (26-135)||(33458466-33458575)
chr4 (26-110)||(6257404-6257488)
chr4 (59-135)||(10733584-10733660)
chr4 (46-110)||(10739558-10739622)
chr4 (59-135)||(10947353-10947429)
chr4 (46-110)||(10953327-10953391)
chr4 (26-110)||(24287863-24287947)
chr4 (26-102)||(33461591-33461667)
chr4 (59-110)||(26957035-26957086)
chr4 (29-110)||(4632258-4632339)
[»] chr6 (8 HSPs)
chr6 (135-359)||(18811573-18811795)
chr6 (152-212)||(18625442-18625502)
chr6 (26-110)||(8651002-8651086)
chr6 (26-110)||(25343501-25343585)
chr6 (26-110)||(25354088-25354172)
chr6 (59-122)||(21770799-21770862)
chr6 (46-110)||(4580540-4580604)
chr6 (59-135)||(31756452-31756528)
[»] chr1 (9 HSPs)
chr1 (152-336)||(24189223-24189406)
chr1 (26-135)||(34739837-34739946)
chr1 (26-110)||(1078121-1078205)
chr1 (26-110)||(25381734-25381818)
chr1 (26-110)||(25387703-25387787)
chr1 (16-110)||(38152152-38152247)
chr1 (26-110)||(31051421-31051505)
chr1 (59-110)||(8093078-8093129)
chr1 (53-110)||(24926987-24927044)
[»] chr3 (19 HSPs)
chr3 (229-351)||(53834552-53834674)
chr3 (155-357)||(7137663-7137865)
chr3 (26-110)||(10769168-10769252)
chr3 (59-110)||(13444934-13444985)
chr3 (26-135)||(17055992-17056101)
chr3 (26-110)||(11839924-11840008)
chr3 (26-110)||(38449262-38449346)
chr3 (26-110)||(38455749-38455833)
chr3 (28-110)||(13837550-13837632)
chr3 (46-135)||(8331638-8331727)
chr3 (46-110)||(10238431-10238495)
chr3 (46-110)||(10244553-10244617)
chr3 (26-110)||(30051301-30051385)
chr3 (26-110)||(42191419-42191503)
chr3 (26-110)||(42197361-42197445)
chr3 (59-110)||(26429649-26429700)
chr3 (26-110)||(10760849-10760933)
chr3 (26-110)||(49151488-49151572)
chr3 (26-110)||(49157555-49157639)
[»] scaffold0208 (2 HSPs)
scaffold0208 (26-110)||(6399-6483)
scaffold0208 (26-110)||(12272-12356)
[»] chr2 (13 HSPs)
chr2 (26-110)||(13149883-13149967)
chr2 (26-110)||(44717004-44717088)
chr2 (59-110)||(23343430-23343481)
chr2 (26-135)||(28683144-28683253)
chr2 (61-110)||(31008231-31008280)
chr2 (26-110)||(13455976-13456060)
chr2 (26-110)||(13461917-13462001)
chr2 (59-135)||(35438937-35439013)
chr2 (26-110)||(36750291-36750375)
chr2 (59-110)||(35084911-35084962)
chr2 (59-110)||(35090884-35090935)
chr2 (61-110)||(30965204-30965253)
chr2 (61-110)||(31002253-31002302)
[»] scaffold2098 (1 HSPs)
scaffold2098 (272-344)||(764-836)
[»] scaffold0363 (1 HSPs)
scaffold0363 (59-135)||(851-927)
[»] scaffold0012 (1 HSPs)
scaffold0012 (26-110)||(173089-173173)
[»] scaffold0440 (1 HSPs)
scaffold0440 (26-110)||(1393-1477)


Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Complemental strand, 3678001 - 3677530
Alignment:
Q  10 cagagaggagaaactgtgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttaga 109  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3678001 cagagaggagaaactgtgatttgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctcttcaga 3677902  T
Q  110 ttgagaaaagagaatgtttgtcgtgtgaaatccaagcagagatgcaaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatggga 209  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3677901 tggagagaagagaatgtttgtcgtgtgaaatccaagcagagatgcaaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatgtga 3677802  T
Q  210 gtgaggaagtcattgattcacatacgcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagtt 309  Q
    |||  ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3677801 gtggtgaagtcactgattcacatacgcaatgaggttcatagagattataatctcaccgacattctagtgggtcaaatttcatttgctctatgtgctagtt 3677702  T
Q  310 cataatccaaaagacactagtgtttatgcattgatctttcacgctcttgggaacagctattgggaacaccaaaaatttaaaataaataacggttgaggat 409  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||    
T  3677701 cataatccaaaagacactagtgtttatgcattgatctttcacactcttgggaaccgttattgggaacatcaaaaatttaaaatcaataacggttgaggat 3677602  T
Q  410 tgtagaaatttttaattgattaattatttattatcagtactactgtaatcaattagtcttccttttgacaaa 481  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||    
T  3677601 tgtagaaatttttaattgattaattatttattattagtactattgtaatcaattagtctttcttttgacaaa 3677530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 479 - 683
Target Start/End: Complemental strand, 3676474 - 3676267
Alignment:
Q  479 aaaatcctttaattccttgcttgtggtgaataatgaata---gaataagttattgaatagtgctaacaacactctcttatcaacactatttacaaatgag 575  Q
    ||||||||||||||  |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3676474 aaaatcctttaatttgttgcttgtggtgaataatgaataatagaataagttattgaatagtgctaacaacactctcttatcaacactatttacaaatgag 3676375  T
Q  576 ttataattaaaatggtgggtcatgcattgatttcatccgatnnnnnnnttagtgttgaataatcaacctaacaatggttgatactatggctacatgtacc 675  Q
    |||||||||||||||||||||||||||||||||||||||||       | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3676374 ttataattaaaatggtgggtcatgcattgatttcatccgataagaaaatgagtgttgaataaacaacctaacaatggttgatactatggctacatgtacc 3676275  T
Q  676 gtaaaaag 683  Q
     |||||||    
T  3676274 ctaaaaag 3676267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 135 - 364
Target Start/End: Original strand, 12975595 - 12975824
Alignment:
Q  135 tgaaatccaagcagagatgcaaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatgggagtgaggaagtcattgattcacatac 234  Q
    ||||||||| ||| || ||||||||||||||||| ||| | | |||||||||||||||||||||| |||||| |||||| || |||| ||||||||||||    
T  12975595 tgaaatccaggcataggtgcaaggccaaaatgcatcacactgcgttgaacaactttggacgagaggtcaatgtgagtgatgaggtcactgattcacatac 12975694  T
Q  235 gcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacactagtgttt 334  Q
    | |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  12975695 ggaatgaggttcatagaggttataatctcaccgacattctagtaggtcaaatttcatttgctctatgtgctagttcatagtccaaaagacactagtgctt 12975794  T
Q  335 atgcattgatctttcacgctcttgggaaca 364  Q
    |||||||||| |||||||||||| ||||||    
T  12975795 atgcattgatttttcacgctcttcggaaca 12975824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 339340 - 339231
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  339340 tgatctgaaacacacaatagagttagcggcggctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagag 339241  T
Q  126 tttgtcgtgt 135  Q
    ||||||||||    
T  339240 tttgtcgtgt 339231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 351747 - 351638
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  351747 tgatctgaaacacacaatagagttagcggcggctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagag 351648  T
Q  126 tttgtcgtgt 135  Q
    ||||||||||    
T  351647 tttgtcgtgt 351638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 5849501 - 5849406
Alignment:
Q  16 ggagaaactgtgatctgaaatacacgacata-gttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||||| ||||||||||||||| ||||| |||| ||||   ||||||| |||||||||||||| ||| |||||||||||| || |||| ||||    
T  5849501 ggagaaactatgatctgaaatacacaacatatgttagcggcgtctgatttggttcttcctcaaccggtacctttatgcctcaagttatcttcagat 5849406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 28421158 - 28421267
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  28421158 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagag 28421257  T
Q  126 tttgtcgtgt 135  Q
    |||| |||||    
T  28421258 tttgccgtgt 28421267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 20238911 - 20238827
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  20238911 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 20238827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 3811368 - 3811477
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||  ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  3811368 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagag 3811467  T
Q  126 tttgtcgtgt 135  Q
    |||| |||||    
T  3811468 tttgccgtgt 3811477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 3817510 - 3817619
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||  ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  3817510 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagag 3817609  T
Q  126 tttgtcgtgt 135  Q
    |||| |||||    
T  3817610 tttgccgtgt 3817619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 5979408 - 5979457
Alignment:
Q  61 atttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  5979408 atttggttcttcctcaaccggtacttttatgcctcaagttctcttcagat 5979457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 526
Target Start/End: Complemental strand, 3684729 - 3684682
Alignment:
Q  479 aaaatcctttaattccttgcttgtggtgaataatgaatagaataagtt 526  Q
    ||||| |||| ||||||||||| ||||||||| |||||||||||||||    
T  3684729 aaaattctttgattccttgcttttggtgaatattgaatagaataagtt 3684682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 479 - 526
Target Start/End: Complemental strand, 3696005 - 3695958
Alignment:
Q  479 aaaatcctttaattccttgcttgtggtgaataatgaatagaataagtt 526  Q
    ||||| |||| ||||||||||| ||||||||| |||||||||||||||    
T  3696005 aaaattctttgattccttgcttttggtgaatattgaatagaataagtt 3695958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 35148241 - 35148292
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  35148241 tgatttggttcttcctcaaccggtacctttatgcctcaaattctcttcagat 35148292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 562
Target Start/End: Original strand, 35198636 - 35198673
Alignment:
Q  525 ttattgaatagtgctaacaacactctcttatcaacact 562  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  35198636 ttattgagtagtgctaacaacactctcttctcaacact 35198673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 15843887 - 15843823
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||| | ||||||| |||||||||||| | ||| |||||||||||| ||||||| ||||    
T  15843887 agttagcggcggctgatttggttcttcctcaactggtacatttatgcctcaagttctcttcagat 15843823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 15860996 - 15860932
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||| | ||||||| |||||||||||| | ||| |||||||||||| ||||||| ||||    
T  15860996 agttagcggcggctgatttggttcttcctcaactggtacatttatgcctcaagttctcttcagat 15860932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 18656885 - 18656961
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||| | |||||||||| ||  | ||||||| |||  |||| ||||||| |||||||||||    
T  18656885 tgatttggttcttcctcaactgttacttttatgtctttagttctcttcagacggagagaagagaaagtttgtcgtgt 18656961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 1e-83; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 135 - 364
Target Start/End: Original strand, 29273258 - 29273487
Alignment:
Q  135 tgaaatccaagcagagatgcaaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatgggagtgaggaagtcattgattcacatac 234  Q
    |||| |||| ||| || ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||  || ||||||||    
T  29273258 tgaattccaggcataggtgcaaggccaaaatgcaccacaccgcgttgaacaactttggacgagagatcaatgtgagtgatgaagtcaccgactcacatac 29273357  T
Q  235 gcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacactagtgttt 334  Q
    | |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  29273358 ggaatgaggttcatagaggttataatctcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcatagtccaaaagacactagtgctt 29273457  T
Q  335 atgcattgatctttcacgctcttgggaaca 364  Q
    |||||||||| |||||||||||||| ||||    
T  29273458 atgcattgatttttcacgctcttggaaaca 29273487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 19066332 - 19066420
Alignment:
Q  47 gttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    |||| |||||| ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |||||||||||    
T  19066332 gttagcggcagctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtttgtcgtgt 19066420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 12686378 - 12686487
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  12686378 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagag 12686477  T
Q  126 tttgtcgtgt 135  Q
    |||| |||||    
T  12686478 tttgccgtgt 12686487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 12692480 - 12692589
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  12692480 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagag 12692579  T
Q  126 tttgtcgtgt 135  Q
    |||| |||||    
T  12692580 tttgccgtgt 12692589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 30772209 - 30772133
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |||||||||||    
T  30772209 tgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtttgtcgtgt 30772133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 7389746 - 7389830
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| ||||   ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  7389746 tgatctgaaacacacaatagagttagcggcgactgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 7389830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 14610096 - 14610020
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||| ||||||||||||| || ||||||| |||| | || || |||| ||||| |||||    
T  14610096 tgatttggttcttcctcaaccggtacttttatgcctaaagttctcttcagatggggagaaaagaaagtttgccgtgt 14610020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 19060003 - 19060079
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||| | |||||||||||||||| ||||||| | || | || ||||||  |||||||||||    
T  19060003 tgatttggttcttcctcaactggtacttttatgcctcaagttctcttcatatcgggagaagagagagtttgtcgtgt 19060079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 30384618 - 30384694
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||| ||| ||||| |||| | ||||||| |||| | || ||||||||||||| |||||    
T  30384618 tgatttggttcttcctcaaccggtacctttatacctcgagttctcttcagatggggagaagagaatgtttgccgtgt 30384694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 32094420 - 32094504
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | | ||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  32094420 tgatctgaaacacacaatagagttagcggcggctaatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 32094504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 32097221 - 32097305
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||  |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  32097221 tgatctgaaacacacaatagagttagcggcggctgatttagttcttcctcaaccggtacctttatgcctcaagttctcttcagat 32097305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 41297244 - 41297172
Alignment:
Q  25 gtgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaa 97  Q
    ||||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| ||||||||||||    
T  41297244 gtgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaa 41297172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 20500068 - 20500020
Alignment:
Q  57 gttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctt 105  Q
    ||||||||| |||||||| ||||| ||| |||||||||||| |||||||    
T  20500068 gttgatttggttcttccttaaccggtacatttatgcctcaagttctctt 20500020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 3e-65; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 135 - 364
Target Start/End: Complemental strand, 29229852 - 29229622
Alignment:
Q  135 tgaaatccaagcagagatgcaaggccaaaatgcaccacgccgtgttgaacaa-ctttggacgagagatcaatgggagtgaggaagtcattgattcacata 233  Q
    |||||| || ||| || ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||| |   |||||||||||||||    
T  29229852 tgaaattcaggcataggtgcaaggccaaaatgcaccacaccgcgttgaacaaactttggacgagagatcaatgtgagtgatgggatcattgattcacata 29229753  T
Q  234 cgcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacactagtgtt 333  Q
    || |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| |||| |    
T  29229752 cggaatgaggttcatagaggttataatctcaccgacattctagtgggtcaaatttcatttgctctatgtactagttcataatccaaaaatcacgagtgct 29229653  T
Q  334 tatgcattgatctttcacgctcttgggaaca 364  Q
    |||||| |||| | |||||||  ||||||||    
T  29229652 tatgcactgatttctcacgcttatgggaaca 29229622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 5542359 - 5542443
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  5542359 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 5542443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 32890849 - 32890765
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  32890849 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 32890765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 32896973 - 32896889
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  32896973 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 32896889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 42033728 - 42033652
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| |||| ||||||  ||||| |||||    
T  42033728 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggagagaagagagagtttgccgtgt 42033652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 42993202 - 42993286
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  42993202 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 42993286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Complemental strand, 36818932 - 36818855
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctc 103  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| |||||    
T  36818932 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctc 36818855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 122
Target Start/End: Complemental strand, 10699990 - 10699894
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagaga 122  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| || || | |||| |||| ||||||    
T  10699990 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttttcgtcagatggagagaagaga 10699894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 14417868 - 14417792
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  ||||| |||||    
T  14417868 tgatttggttcttcctcaaccggtacgtttatgcctcaagttctcttcagatggggagaagagagagtttgccgtgt 14417792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 22219959 - 22220010
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  22219959 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 22220010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 9935239 - 9935132
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | | ||| |||| | ||||||| ||||||||||| || ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  9935239 tgatctgaaacacacaatagatttagcggcggctgatttggttcttcctcaatcggtacctttatgcctcaagttctcttcagatggggagaagaga--g 9935142  T
Q  126 tttgtcgtgt 135  Q
    ||||||||||    
T  9935141 tttgtcgtgt 9935132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 10705798 - 10705714
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||| || || ||||||| ||||    
T  10705798 tgatctgaaacacacaatagagttagcggcggctgatttgattcttcctcaaccggtacctttatggcttaagttctcttcagat 10705714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 135 - 364
Target Start/End: Complemental strand, 6800948 - 6800718
Alignment:
Q  135 tgaaatccaagcagagatgcaaggccaaaatgcaccacgccgtgttgaacaa-ctttggacgagagatcaatgggagtgaggaagtcattgattcacata 233  Q
    ||||||||| ||| || ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||| |||||| ||  ||| ||||||||| |    
T  6800948 tgaaatccaggcataggtgcaaggccaaaatgcaccacaccgcgttgaacaagctttggacgagagatcaatgtgagtgatgagatcactgattcacaaa 6800849  T
Q  234 cgcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacactagtgtt 333  Q
    || |||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||| |  |    
T  6800848 cggaatgaggttcatagaggttataatctcaccgacattctagtgagtcaaatttcatttgctctatgtactagttcatagtccaaaagacactattact 6800749  T
Q  334 tatgcattgatctttcacgctcttgggaaca 364  Q
    ||| ||||||| ||||| |||||| ||||||    
T  6800748 tatacattgatatttcaagctcttaggaaca 6800718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 193 - 356
Target Start/End: Original strand, 27067554 - 27067717
Alignment:
Q  193 acgagagatcaatgggagtgaggaagtcattgattcacatacgcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatt 292  Q
    |||||| ||||||| || ||| || |||| ||||||||||||| ||||||||||| |||| |||| || ||||| |||||||||| ||||||||||||||    
T  27067554 acgagatatcaatgtgactgatgaggtcactgattcacatacggaatgaggttcacagaggttatgatctcaccaacattctagtaggtcaaatttcatt 27067653  T
Q  293 tgctctatgtgctagttcataatccaaaagacactagtgtttatgcattgatctttcacgctct 356  Q
    ||||||||||||||||||||| ||||||||| ||||||| |||||||||| | ||||| |||||    
T  27067654 tgctctatgtgctagttcatagtccaaaagaaactagtgcttatgcattggtttttcatgctct 27067717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 33458466 - 33458575
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| ||||| |||||||||||| |||||||||||| ||||||| |||| | || ||||||| |    
T  33458466 tgatctgaaacacacaatagagttagcggcggctgatttggttctttctcaaccgatacctttatgcctcaagttctcttcagatggggagaagagaaag 33458565  T
Q  126 tttgtcgtgt 135  Q
    ||||||||||    
T  33458566 tttgtcgtgt 33458575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 6257404 - 6257488
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  6257404 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 6257488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 10733584 - 10733660
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||| |||| | || ||||||  ||||| |||||    
T  10733584 tgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaagagagagtttgccgtgt 10733660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 10739558 - 10739622
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||| | ||||||| |||||||||||||||||| |||||||||||| ||||||| ||||    
T  10739558 agttagcggcggctgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagat 10739622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 10947353 - 10947429
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||| |||| | || ||||||  ||||| |||||    
T  10947353 tgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaagagagagtttgccgtgt 10947429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 10953327 - 10953391
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||| | ||||||| |||||||||||||||||| |||||||||||| ||||||| ||||    
T  10953327 agttagcggcggctgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagat 10953391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 24287947 - 24287863
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  24287947 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 24287863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 33461591 - 33461667
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttct 102  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||    
T  33461591 tgatctgaaacacacaatagagttagcggcggctgatttgattcttcctcaaccggtacctttatgcctcaagttct 33461667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 26957035 - 26957086
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  26957035 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 26957086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 4632339 - 4632258
Alignment:
Q  29 tctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||  ||||||||| ||||   ||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||    
T  4632339 tctgaaacacaaaacatagttagcggcttctgatttggttcttcctcaaccggtatctttatgcctcaagttctcttcagat 4632258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 3e-53; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 135 - 359
Target Start/End: Complemental strand, 18811795 - 18811573
Alignment:
Q  135 tgaaatccaagcagagatgcaaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatgggagtgaggaagtcattgattcacatac 234  Q
    ||||||||| ||| || ||||||||||||||||||| |  ||||||||||||||||||||||||||||| || |||||| ||  ||| ||||    ||||    
T  18811795 tgaaatccaggcataggtgcaaggccaaaatgcaccgcatcgtgttgaacaactttggacgagagatcactgtgagtgatgagatcactgat----atac 18811700  T
Q  235 gcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgc--tagttcataatccaaaagacactagtgt 332  Q
      |||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||| || ||| |||||||||||||     
T  18811699 tgaatgaggttcatagaggttataattccactgacattctagtgggtcaaatttcatttgctctatgtgctatagttcgtagtccgaaagacactagtgc 18811600  T
Q  333 ttatgcattgatctttcacgctcttgg 359  Q
    |||||||||||| || |||||||||||    
T  18811599 ttatgcattgattttccacgctcttgg 18811573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 18625502 - 18625442
Alignment:
Q  152 tgcaaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatgggagtg 212  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||    
T  18625502 tgcaaggccaaaatacaccacgccgtgttgaacaattttggacgagagatcaatgtgagtg 18625442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 8651002 - 8651086
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  8651002 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 8651086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 25343585 - 25343501
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  25343585 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 25343501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 25354172 - 25354088
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  25354172 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 25354088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 21770799 - 21770862
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagaga 122  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| ||||| |||||    
T  21770799 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggagaagagaga 21770862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 4580540 - 4580604
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  4580540 agttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 4580604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 31756452 - 31756528
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||| | ||| ||||| |||||| ||||||| |||| | || ||||||  |||||||||||    
T  31756452 tgatttggttcttcctcaacaggtacctttatacctcaagttctcttcagatggggagaagagagagtttgtcgtgt 31756528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 152 - 336
Target Start/End: Original strand, 24189223 - 24189406
Alignment:
Q  152 tgcaaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatgggagtgaggaagtcattgattcacatacgcaatgaggttcataga 251  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||| | || | || || ||||| |||| ||| |||||||||||    
T  24189223 tgcaaggccaaaatgcaccacatcgtgttgaacaactttggacgagagatcaatgtgagttatgaggccactggttcacgtacggaattaggttcataga 24189322  T
Q  252 gattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacactagtgtttat 336  Q
    | ||||||| |||| ||||||||| || ||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||    
T  24189323 ggttataatctcactgacattctaatgagtcaaatttcatttgctttatgtgctagttcatagtccaaaa-acactagtgtttat 24189406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 34739946 - 34739837
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||||| || ||||||  |    
T  34739946 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagattgggagaagagagag 34739847  T
Q  126 tttgtcgtgt 135  Q
    ||||||||||    
T  34739846 tttgtcgtgt 34739837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 1078205 - 1078121
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  1078205 tgatctgaaacacacaatagagttagcggccgctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 1078121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 25381734 - 25381818
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  25381734 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 25381818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 25387703 - 25387787
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  25387703 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 25387787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 38152152 - 38152247
Alignment:
Q  16 ggagaaactgtgatctgaaatacacgacata-gttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||||  ||||||||||||||| ||||| |||| |||||| | ||||| |||||| ||||||| ||| ||||||| |||| || |||||||||    
T  38152152 ggagaaaccatgatctgaaatacacaacatacgttagcggcagctaatttggttcttcttcaaccggtacctttatgcttcaagttttctttagat 38152247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 31051505 - 31051421
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||| ||||| ||| |||||||||||| ||||||| ||||    
T  31051505 tgatctgaaacacacaatagagttagcggcggctgatttggttcttccttaaccggtacctttatgcctcaagttctcttcagat 31051421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 8093078 - 8093129
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  8093078 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 8093129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 24926987 - 24927044
Alignment:
Q  53 ggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| ||||||| |||||||||||||| ||| | |||||||||| ||||||| ||||    
T  24926987 ggcagctgatttggttcttcctcaaccggtacctatatgcctcaagttctcttcagat 24927044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 6e-39; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 229 - 351
Target Start/End: Complemental strand, 53834674 - 53834552
Alignment:
Q  229 acatacgcaatgaggttcatagagattataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacacta 328  Q
    ||||||| |||||||||||||||| ||||||| |||| || ||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53834674 acatacggaatgaggttcatagaggttataatctcactgatattttagtggatcaaatttcatttgctctatgtgctagttcatagtccaaaagacacta 53834575  T
Q  329 gtgtttatgcattgatctttcac 351  Q
    ||| |||||||||||| ||||||    
T  53834574 gtgcttatgcattgatttttcac 53834552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 155 - 357
Target Start/End: Complemental strand, 7137865 - 7137663
Alignment:
Q  155 aaggccaaaatgcaccacgccgtgttgaacaactttggacgagagatcaatgggagtgaggaagtcattgattcacatacgcaatgaggttcatagagat 254  Q
    |||||||||||||| |||  || |||||||||||||||| |||| |||||||    | | ||  | | | ||||||||||| ||||||||| |||||| |    
T  7137865 aaggccaaaatgcatcacatcgcgttgaacaactttggatgagatatcaatgtagataatgagattactaattcacatacgaaatgaggtttatagaggt 7137766  T
Q  255 tataatttcaccgacattctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacactagtgtttatgcattgatctttcacgct 354  Q
    |||||| | ||| ||||||||||||||||||||| |||| ||||||||||||||||||| |||| ||| |||  ||| |||||||||||| ||||| |||    
T  7137765 tataatcttacccacattctagtgggtcaaattttattttctctatgtgctagttcatagtccagaagtcaccggtgcttatgcattgatttttcatgct 7137666  T
Q  355 ctt 357  Q
    |||    
T  7137665 ctt 7137663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 10769168 - 10769252
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||||||||||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  10769168 tgatctgaaatacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 10769252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 13444985 - 13444934
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||    
T  13444985 tgatttggttcttcctcaaccgatacttttatgcctcaagttctcttcagat 13444934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 17055992 - 17056101
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  17055992 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagag 17056091  T
Q  126 tttgtcgtgt 135  Q
    |||| |||||    
T  17056092 tttgccgtgt 17056101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 11839924 - 11840008
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  11839924 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 11840008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 38449262 - 38449346
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  38449262 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 38449346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 38455749 - 38455833
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  38455749 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 38455833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 13837632 - 13837550
Alignment:
Q  28 atctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  13837632 atctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 13837550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 135
Target Start/End: Complemental strand, 8331727 - 8331638
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  ||||| |||||    
T  8331727 agttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtttgccgtgt 8331638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 10238431 - 10238495
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  10238431 agttagcggcggctgatttggttcttcctcaaccggtacatttatgcctcaagttctcttcagat 10238495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 10244553 - 10244617
Alignment:
Q  46 agttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  10244553 agttagcggcggctgatttggttcttcctcaaccggtacatttatgcctcaagttctcttcagat 10244617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 30051301 - 30051385
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| || | | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  30051301 tgatctgaaacacacaatagagttagcgacggctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagat 30051385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 42191419 - 42191503
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||  | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  42191419 tgatctgaaacacacaatagagttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 42191503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 42197361 - 42197445
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||  | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  42197361 tgatctgaaacacacaatagagttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 42197445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 26429649 - 26429700
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  26429649 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 26429700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 10760849 - 10760933
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| ||||   ||||||| |||||||||||||  ||| |||||||||||| ||||||| ||||    
T  10760849 tgatctgaaacacacaatagagttagcggcgactgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagat 10760933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 49151572 - 49151488
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||  | ||||||| |||||||||||||| ||| |||||||||||  ||||||| ||||    
T  49151572 tgatctgaaacacacaatagagttagcggtggctgatttgattcttcctcaaccggtacctttatgcctcacgttctcttcagat 49151488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 49157639 - 49157555
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||  | ||||||| |||||||||||||| ||| |||||||||||  ||||||| ||||    
T  49157639 tgatctgaaacacacaatagagttagcggtggctgatttgattcttcctcaaccggtacctttatgcctcacgttctcttcagat 49157555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 6483 - 6399
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  6483 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 6399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 12356 - 12272
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  12356 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 12272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 13149883 - 13149967
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  13149883 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 13149967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 44717004 - 44717088
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  44717004 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 44717088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 110
Target Start/End: Complemental strand, 23343481 - 23343430
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||||| ||||    
T  23343481 tgatttggttcttcctcaaccgatacctttatgcctcaagttctcttcagat 23343430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 28683144 - 28683253
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatg 125  Q
    |||||||||| |||| | | ||||| | || | ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  |    
T  28683144 tgatctgaaacacacaatagagttaacagcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagag 28683243  T
Q  126 tttgtcgtgt 135  Q
    |||| |||||    
T  28683244 tttgccgtgt 28683253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 31008280 - 31008231
Alignment:
Q  61 atttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||||||||||||| |||||||||||||||| ||||||| ||||    
T  31008280 atttggttcttcctcaaccggtacttttatgcctcaagttctcttcagat 31008231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 13456060 - 13455976
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||  | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  13456060 tgatctgaaacacacaatagagttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 13455976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 13462001 - 13461917
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||  | ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  13462001 tgatctgaaacacacaatagagttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 13461917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 35438937 - 35439013
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  ||||| |||||    
T  35438937 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtttgccgtgt 35439013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 36750375 - 36750291
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||| ||  |||||||||||| ||||||| ||||    
T  36750375 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccggtatctttatgcctcaagttctcttcagat 36750291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 35084911 - 35084962
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  35084911 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 35084962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 35090884 - 35090935
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  35090884 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 35090935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 30965253 - 30965204
Alignment:
Q  61 atttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  30965253 atttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 30965204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Complemental strand, 31002302 - 31002253
Alignment:
Q  61 atttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    ||||| |||||||||||||| ||| |||||||||||| ||||||| ||||    
T  31002302 atttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 31002253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2098 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 764 - 836
Alignment:
Q  272 tctagtgggtcaaatttcatttgctctatgtgctagttcataatccaaaagacactagtgtttatgcattgat 344  Q
    |||| ||| |||||||||||||| | ||| |||||||||||  ||||||||||| || | |||||||||||||    
T  764 tctaatggctcaaatttcatttgttttatatgctagttcattgtccaaaagacattaatatttatgcattgat 836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 851 - 927
Alignment:
Q  59 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagattgagaaaagagaatgtttgtcgtgt 135  Q
    ||||||| |||||||||||||| ||| |||||||||||| ||||||| |||| | || ||||||  ||||| |||||    
T  851 tgatttggttcttcctcaaccggtacgtttatgcctcaagttctcttcagatggggagaagagagagtttgccgtgt 927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 173089 - 173173
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| |||| | ||||||| |||||||||||||  ||| |||||||||||| ||||||| ||||    
T  173089 tgatctgaaacacacaatagagttagcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagat 173173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 1393 - 1477
Alignment:
Q  26 tgatctgaaatacacgacatagttaccggcagttgatttgtttcttcctcaaccgatacttttatgcctcaatttctctttagat 110  Q
    |||||||||| |||| | | ||||| ||||   ||||||| || ||||||||||| ||| |||||||||||| ||||||| ||||    
T  1393 tgatctgaaacacacaatagagttagcggcgactgatttggtttttcctcaaccggtacatttatgcctcaagttctcttcagat 1477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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