View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_high_5 (Length: 593)
Name: NF12194_high_5
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 14 - 569
Target Start/End: Complemental strand, 41700155 - 41699601
Alignment:
| Q |
14 |
tgtgccttatacttttcttgtgaaagttacttactcaaaattaattagacatcgacattaaaccaatcaagaataagttgaatcaaacatgaagccttaa |
113 |
Q |
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| T |
41700155 |
tgtgccttatacttttcttgtgaaagttacttactcaaaattaattagacattgatattaaaccaatcaagaataagttgaatcaaacatgaagccttaa |
41700056 |
T |
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| Q |
114 |
ctaatgagcttttcacaactaacaaaacttcatgagcagctacatttccctacaggcggcatataacaagctgatgggaaatgaattccattttgagaat |
213 |
Q |
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| T |
41700055 |
ctaatgagcttttcacaactaacaaaacttcatgagcagctacatttccctacaggcaacatataacaagctgatgggaaatgaattccattttgagaat |
41699956 |
T |
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| Q |
214 |
cagaatatgctcaagaacacaacagcatttctaatacaaatgtttaaccattaattgttcaaataacaaaactttatcattaaatcaagcaaccccatct |
313 |
Q |
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| T |
41699955 |
cagaatattgtcaagaacacaacagcatttctaatacaaatgtttaaccattaattgttcaaataacaaaactttatcattaaatcaagcaaccccatct |
41699856 |
T |
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| Q |
314 |
aacccattcaaacgaaatactatgaaatgaaataagaaaagactaaaacaacaacataaaatttatgttaaaactttatgaaaaataagttacaataatg |
413 |
Q |
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| T |
41699855 |
aacccattcaaacgaaatactatgaaatgaaataagaaaagactaaaacaacaacataaaatttatgtt-aaactttatgaaaaataagttccaataatg |
41699757 |
T |
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| Q |
414 |
ctcaatatgtaaaacatatattaaacatcataaatctgtaatttttgcacaattgagcaaatgcaaaatcaaatcatcacaaaagtgtatgagatacagc |
513 |
Q |
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| T |
41699756 |
ctcaatatgtaaaacatatattaaacatcataaatctgtaatttttgcacaattgagcaaatgcaaaatcaaatcatcacaaaagtgtatgagatacagc |
41699657 |
T |
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| Q |
514 |
ataatcaaatcgtgaaccggaaaataacaaatctttggattgcaatttccataaag |
569 |
Q |
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| T |
41699656 |
ataatcaaatcgtgaaccggaaaataacaaatctttggattgcaatttccataaag |
41699601 |
T |
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