View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_high_6 (Length: 583)
Name: NF12194_high_6
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Complemental strand, 52258165 - 52257616
Alignment:
| Q |
19 |
gttcatgtggcaactgccgaaaatttcaggcttcagtgtttagacttatagatatgccaatcttcacctcacctcgtcgtgatatatacatattgtagtg |
118 |
Q |
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| T |
52258165 |
gttcatgtggcaactgctgaaaatttcaggcttcagtgtttagacttatagatatgccaatcttcacctcacctcgtcgtgatatatacatattgtagtg |
52258066 |
T |
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| Q |
119 |
cacaatttaaactctatagatacggaatgggactattatacatttggaacgtagtaggtgagatatattctgttttcatgttgtagcgcgctatttaaac |
218 |
Q |
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| T |
52258065 |
cacaatttaaactctatagatacggaatgggactattatacatttggaacgtagtaggtgagatatattctgttttcatgttgtagcgcgctatttaaac |
52257966 |
T |
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| Q |
219 |
tctagatatggaatcccactgatactcatttggaacgtagttagatgagaaatcttttgtttgtgccgaaatgggaccatcaactggacattatatcatg |
318 |
Q |
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| T |
52257965 |
tctagatatggaatcccactgatacacatttggaacgtagttagatgagaaatcttttgtttgtgccgaaatgggaccatcaactggacattatatcatg |
52257866 |
T |
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| Q |
319 |
aat--agattgcagtttatttaggtttactagcagttattagccttgcatgaagggttgtatattctcaaacatttctcttttagcttgcatgatgcacc |
416 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52257865 |
aatagagattgcagtttatttaggtttactagcagttattagccttgcatgaagggttgtatattctcaaacatttctcttttagcttgcatgatgcacc |
52257766 |
T |
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| Q |
417 |
agtaaattttggggttcaatcatatgtgataataatatactctacgaactagttgagttcaatcatataaagtctgtttagtgtgggttcatttatttat |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52257765 |
agtaaattttggggttcaatcatatgtgataataatata--ctacgaactagttgagttcaatcatataaagtctgtttagtgtgggttcatttattcat |
52257668 |
T |
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| Q |
517 |
tacaggtaaatttgaacgtcaagtttcaaagccacgacgggtatgtgagcac |
568 |
Q |
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| T |
52257667 |
tacaggtaaatttgaacgtcaagtttcaaagccacgacgggtatgtgagcac |
52257616 |
T |
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