View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_10 (Length: 553)
Name: NF12194_low_10
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 509; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 1 - 541
Target Start/End: Complemental strand, 26993351 - 26992811
Alignment:
| Q |
1 |
ccagaggacgaagattaacttcccggtgataaacctcatcttcataacacttgatggtagcgcgaagttttgcacctttatccggcaattttttagcaac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26993351 |
ccagaggacgaagattaacttcccggtgataaacctcatcttcataacacttgatggtagcgcgaagttttgcacctttatccggcaatttttcagcaac |
26993252 |
T |
|
| Q |
101 |
cttttctagaagcatcttctttctcttaatgtgttcctgaagctcgtaatcattgaggaggtcgaggccgtcgatcaagagatgagactcctgatcggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26993251 |
cttttctagaagcatcttctttctcttaatgtgttcctcaagctcgtaatcatcgaggaggtcgaggccgtcgatcaagagatgagactcctgatcggaa |
26993152 |
T |
|
| Q |
201 |
gtcatagcagttgtcgatgagggtgttcctatcaagagagaatgaaacggttactcatgttatgggaagaagtgattattatgtgtgatagaaatctgag |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
26993151 |
gtcatagcagttgtcgatgagggtgttcctatcaagagagaatgaaacggttactcatgtaatgggaagaagtgattattatgcatgatagaaatctgag |
26993052 |
T |
|
| Q |
301 |
actatacataaaagaaagtgaacaagtactccaaaatttttgcaaaccaaatgccaaggaggaaagagaagcaagccaagcgcaattggtttaactccca |
400 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26993051 |
actatgcataaaagaaagtgaacaaatactccaaaatttttgcaaaccaaatgccaaggaggaaagagaagcaagccaagcgcaattggtttaactccca |
26992952 |
T |
|
| Q |
401 |
cgactacttttggaatcccgctctccaccaagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaa |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992951 |
cgactacttttggaatcccgctctccaccaagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaa |
26992852 |
T |
|
| Q |
501 |
atctaggtatggtaggttggacgaaattgctattctctgct |
541 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26992851 |
atctaggtatggtaggttggacgaaattgctattctctgct |
26992811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 4 - 204
Target Start/End: Complemental strand, 26993626 - 26993426
Alignment:
| Q |
4 |
gaggacgaagattaacttcccggtgataaacctcatcttcataacacttgatggtagcgcgaagttttgcacctttatccggcaattttttagcaacctt |
103 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26993626 |
gaggacgaagattaatttcccggtgataaacctcatcttcataacacttgatggtagcgcaaagttttgcacctttatccggcaattttttagcaacctt |
26993527 |
T |
|
| Q |
104 |
ttctagaagcatcttctttctcttaatgtgttcctgaagctcgtaatcattgaggaggtcgaggccgtcgatcaagagatgagactcctgatcggaagtc |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||| |||||| |||||||||||||||||||| |
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| T |
26993526 |
ttctagaagcatcttctttctcttaatgtgttcctcaagctcgtaatcattgaggcggtcgaggccatcgataaagagaggagactcctgatcggaagtc |
26993427 |
T |
|
| Q |
204 |
a |
204 |
Q |
| |
|
| |
|
|
| T |
26993426 |
a |
26993426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 4 - 172
Target Start/End: Complemental strand, 27028377 - 27028209
Alignment:
| Q |
4 |
gaggacgaagattaacttcccggtgataaacctcatcttcataacacttgatggtagcgcgaagttttgcacctttatccggcaattttttagcaacctt |
103 |
Q |
| |
|
|||||||| | ||||||| |||| ||| |||||||||||| || | |||||| |||||||||||||| ||||||||||||||||| || ||| | | |
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|
| T |
27028377 |
gaggacgagggttaactttccggcgatgaacctcatcttcgtagctcttgatagtagcgcgaagtttcgcacctttatccggcaacttcttaccggaggt |
27028278 |
T |
|
| Q |
104 |
ttctagaagcatcttctttctcttaatgtgttcctgaagctcgtaatcattgaggaggtcgaggccgtc |
172 |
Q |
| |
|
||| ||||| |||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||| |
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|
| T |
27028277 |
ttcaagaagattcttctttctcttaatgtgttcttcgagctcgtaatctctgaggcggtcgaggccgtc |
27028209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 62 - 204
Target Start/End: Complemental strand, 26993846 - 26993704
Alignment:
| Q |
62 |
gcgaagttttgcacctttatccggcaattttttagcaaccttttctagaagcatcttctttctcttaatgtgttcctgaagctcgtaatcattgaggagg |
161 |
Q |
| |
|
||||||||| |||||| | |||||||| | |||| | |||||| |||||| |||||||||||| ||||||||||| ||||| ||||| |||||| || |
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| T |
26993846 |
gcgaagtttggcacctctgtccggcaagtatttaccggacttttcgagaagcgtcttctttctctgaatgtgttcctcgagctcataatctttgaggcgg |
26993747 |
T |
|
| Q |
162 |
tcgaggccgtcgatcaagagatgagactcctgatcggaagtca |
204 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||| |||||||| |
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| T |
26993746 |
tcgaggccatcgataaagagaggagactcctgattggaagtca |
26993704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 236
Target Start/End: Complemental strand, 26991105 - 26990902
Alignment:
| Q |
36 |
tcatcttcataacacttgatggtagcgcgaagttttgcacctttatccggcaattttttagcaac---cttttctagaagcatcttctttctcttaatgt |
132 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||||||| ||||||||| || || || | |||||| ||||| ||||||||||| ||||| |
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|
| T |
26991105 |
tcatcttcataacacttgatgatagagcgaagttttgcacctctatccggcagattcttctcaccgcacttttcaagaagattcttctttctcagaatgt |
26991006 |
T |
|
| Q |
133 |
gttcctgaagctcgtaatcattgaggaggtcgaggccgtcgatcaagagatgagactcctgatcggaagtcatagcagttgtcgatgagggtgttcctat |
232 |
Q |
| |
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| || ||||||||||| || || |||| ||||| |||| || || || |||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
26991005 |
gatcaacgagctcgtaatcttttagacggtccaggccatcgacgaacggagcaggttcctgaccagaagtcatagcagttgtcgatgagggtgttcctat |
26990906 |
T |
|
| Q |
233 |
caag |
236 |
Q |
| |
|
|||| |
|
|
| T |
26990905 |
caag |
26990902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 410 - 541
Target Start/End: Original strand, 1755394 - 1755524
Alignment:
| Q |
410 |
ttggaatcccgctctccaccaagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggta |
509 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||| |||||||| ||||| |
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| T |
1755394 |
ttggaatctcgctctccaccaagctccaatactctttcgatctcaagagattttccatcaacatagaccaatgatcatagt-gaccatcaaatcaaggta |
1755492 |
T |
|
| Q |
510 |
tggtaggttggacgaaattgctattctctgct |
541 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
|
|
| T |
1755493 |
tggcaggttggacgaaattgctattctctgct |
1755524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 430 - 538
Target Start/End: Complemental strand, 12793938 - 12793831
Alignment:
| Q |
430 |
aagctccaatactctttcgatctcaagcgcttttccatcaacatagaccaatgatcataatggactatcaaatctaggtatggtaggttggacgaaattg |
529 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||| || |||||| |
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|
| T |
12793938 |
aagctccagtactctttcgatctcaagagattttccatcaacatagaccaatgatcataat-gaccatcgaatctaggtatggcaggttgaacaaaattg |
12793840 |
T |
|
| Q |
530 |
ctattctct |
538 |
Q |
| |
|
|||||||| |
|
|
| T |
12793839 |
ttattctct |
12793831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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