View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_12 (Length: 513)
Name: NF12194_low_12
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 38858768 - 38859264
Alignment:
| Q |
1 |
tacacaacagcagaaaaaagcgtttgtccagagcaaagacaactgaaaggaacataacaaaggaataaacattgtggatttcataggttccacatctaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
38858768 |
tacacaacagcagaaaaaagcgtttgtccagagcaaagacaactgaaaggaacataacaaaggaataaacattgtagatttcatgggttccacatctaaa |
38858867 |
T |
|
| Q |
101 |
ggaaaggaacctgagataatggccttattccttagaatcttgatgaccnnnnnnnn-ctaccagtaatcaacaaattgataatgttgatgtagaacttga |
199 |
Q |
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| T |
38858868 |
ggaaaggaacctgagataatggccttattccttagaatcttgatgaccaaaaaaaaactaccagtaatcaacaaattgataatgttgatgtagaacttga |
38858967 |
T |
|
| Q |
200 |
caaggcaccttcaagtgattgaatgaatttggagcaagacaacactcaactgaacatcaaggtgcataccataatatgtgaggtgatactaatttgccaa |
299 |
Q |
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| T |
38858968 |
caaggcaccttcaagtgattgaatgaatttggagcaagacaacactcaactgaacatcaaggtgcataccataatatgtgaggtgatactaatttgccaa |
38859067 |
T |
|
| Q |
300 |
gaaaaggaatgagatttttgaatttaacgattcaaatgatgaatataaatttgatgatgccactcaattacataatgatgatgaagattttgatgcaaac |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38859068 |
gaaaaggaatgagatttttgaatttaacgattcaaatgatgaatataaatttgatgatgccactcaattacataatgatgatgaagattttgatgcaaac |
38859167 |
T |
|
| Q |
400 |
caggaaaaaacttgcgatccgattccgatgaatattgtcgcatcaaatttgaagacatttaagcaagctttgaagtttgaagaacgctcttgaagat |
496 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
38859168 |
caggaaaaaacttgcgatccggttccgatgaatattgtcgcatcaaatttgaagacatttaagcaagctttgaagtttgaagaacactcttgaagat |
38859264 |
T |
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