View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12194_low_14 (Length: 479)
Name: NF12194_low_14
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 12 - 463
Target Start/End: Original strand, 8035875 - 8036326
Alignment:
| Q |
12 |
acagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8035875 |
acagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaaca |
8035974 |
T |
|
| Q |
112 |
catgacagttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8035975 |
catgacagttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
8036074 |
T |
|
| Q |
212 |
tggacactttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacac |
311 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8036075 |
tggacactttgtatccgtgttattcctactataacaaagatcaagaaatgtcaaagaatgagagccaaagattaaagggagtaactcagattttggacac |
8036174 |
T |
|
| Q |
312 |
ttcccatacccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagat |
411 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8036175 |
ttcccatacccattaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagat |
8036274 |
T |
|
| Q |
412 |
taagcagtgaatatgagtgatctctattggacagaacccaagacataaattg |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8036275 |
taagcagtgaatatgagtgatctctattggacagaacccaagacataaattg |
8036326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 462
Target Start/End: Original strand, 8041297 - 8041739
Alignment:
| Q |
20 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacag |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8041297 |
tatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacgtgacag |
8041396 |
T |
|
| Q |
120 |
ttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacact |
219 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8041397 |
tttggaaaagggtcagcacaatgattgtgagttgcaacaaatctgaaaaaattaagatgcaaggttcttaatgcaggtaagtgaagagattttggacact |
8041496 |
T |
|
| Q |
220 |
ttgtatctgtgttattcctact---ataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttccc |
316 |
Q |
| |
|
||| || || || || ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |
|
|
| T |
8041497 |
ttgcatacccgtcataccaactataataacaaagctcaagaaatgtcaaagagtgagagccaaagattaaaggaagtaactcagattttggacaccttcc |
8041596 |
T |
|
| Q |
317 |
atacccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagattaagc |
416 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| | | | |||||||||| ||||||||||||||| |
|
|
| T |
8041597 |
atacccattaattttcaaagagagtagcggatttatattaatgagtttacatagc---tcttcatcttcctgtatccaagcatcaatagtaagattaagt |
8041693 |
T |
|
| Q |
417 |
agtgaatatgagtgatctctattggacagaacccaagacataaatt |
462 |
Q |
| |
|
|| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8041694 |
agggaatatgagtgatctctactggacagaacccaagacataaatt |
8041739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 460
Target Start/End: Complemental strand, 8411301 - 8410855
Alignment:
| Q |
20 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatc-gagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||| | |||| ||||||||| |
|
|
| T |
8411301 |
tatagtcaaactggataatgtctgattagatatgcagaggacttgtgcatcttcaatcaaagaacaa-tacctgagcaccaaagtcttcagcacatgaca |
8411203 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
218 |
Q |
| |
|
||| |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8411202 |
ttttggaaaagggtcagcacaatgattgtgagttgcaacaaagttgaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggacac |
8411103 |
T |
|
| Q |
219 |
tttgtatctgtgttattcctactataa---caaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacacttcc |
315 |
Q |
| |
|
|||| || || || |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8411102 |
tttgcatgcccgtcatacctactataataacaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattttggacactttc |
8411003 |
T |
|
| Q |
316 |
catacccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctctt---cttcaccaccacgcatccaagcattaatagtaagatt |
412 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | | | ||||||||||||||||||||||| |
|
|
| T |
8411002 |
catacccattaattttcaaagagagtagtggatttatattaatgagtttgcatagctcttcttcttcatcttcctgtatccaagcattaatagtaagatt |
8410903 |
T |
|
| Q |
413 |
aagcagtgaatatgagtgatctctattggacagaacccaagacataaa |
460 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8410902 |
aagcagtgaatatgagtgatctctactggacagaacccaagacataaa |
8410855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 463
Target Start/End: Original strand, 9138481 - 9138927
Alignment:
| Q |
20 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaaca-gctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| |||||||||| ||||| |
|
|
| T |
9138481 |
tatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaagcaat-gagaaccaaagtattcaacacgtgaca |
9138579 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
218 |
Q |
| |
|
|||| |||||||||||||||| |||| ||||||||||||||| | ||| ||| ||||||||||||||||||||| || | ||||||||||||||||||| |
|
|
| T |
9138580 |
gtttggaaaggggtcagcacagtgatcgtgagttgcaacaaagtggaaccattgaagatgcaaggttcttaatgctggtatgtgaagagattttggacac |
9138679 |
T |
|
| Q |
219 |
tttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggag---taactcagattttggacacttcc |
315 |
Q |
| |
|
|||| || ||| ||| ||| |||| |||| |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
9138680 |
tttgcatacccgtttttcatacaataagaaaggtcaagaaatgtcaaagagcgagagccaaagagtaaagggagtaataactcagattttggacactttg |
9138779 |
T |
|
| Q |
316 |
catacccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagattaag |
415 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| | || ||| ||||||| |||||||||||||| |
|
|
| T |
9138780 |
catacccaaaaattttcaaagagagaagtggatttattttaatgagtttatataggtcttcttccgctccgtccatacaagcatggatagtaagattaag |
9138879 |
T |
|
| Q |
416 |
cagtgaatatgagtgatctctattggacagaacccaagacataaattg |
463 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
9138880 |
tagtgaagatgagtgatctctactcgacagaacccaagacataaattg |
9138927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 18 - 300
Target Start/End: Complemental strand, 8416905 - 8416620
Alignment:
| Q |
18 |
gatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgac |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||| |||||| |||||||| |
|
|
| T |
8416905 |
gatatagtcaaattggataatgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacaaccactgataaccaaagtattcagcacatgac |
8416806 |
T |
|
| Q |
118 |
agttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggaca |
217 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8416805 |
agtttgaaaagggctcagcacaatgatcgtgagttgcaacaaagttaaaaaatttaagatgcaaggttcttaatgcaggtaagtgaagagattttggaca |
8416706 |
T |
|
| Q |
218 |
ctttgtatctgtgttattcctact---ataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag |
300 |
Q |
| |
|
||| | || || || |||||| |||| |||| ||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
8416705 |
cttcgcataccagtcatacctactataataagaaagctcaagaaatgtcaaagagtgagagccaaagattaacgggagtatctcag |
8416620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 8359045 - 8359325
Alignment:
| Q |
18 |
gatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgac |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| | ||| |||| | ||||||||||||| |
|
|
| T |
8359045 |
gatatagtcaaattggataatgtctgattagatatgcagaggatttgtgcatcatcaatcaaagaacaatacttgagctgcaaagtgttcaacacatgac |
8359144 |
T |
|
| Q |
118 |
agttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggaca |
217 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||| |||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8359145 |
agtttgaaaaggggtcagcacagtgatagtgagttgtaacaaagttgaagcatttaagatgcaaggttcttaatgcaggcaggtgaagagattttggaca |
8359244 |
T |
|
| Q |
218 |
ctttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt |
304 |
Q |
| |
|
||| | || |||| |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
8359245 |
cttcgcatacccgtta-----acta-aagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggaggaactcatattt |
8359325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 141 - 304
Target Start/End: Original strand, 8354614 - 8354777
Alignment:
| Q |
141 |
tgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctac |
240 |
Q |
| |
|
|||| ||||||||||||||| |||| | |||| |||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
8354614 |
tgatggtgagttgcaacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtctccgtgttattcctac |
8354713 |
T |
|
| Q |
241 |
tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8354714 |
tataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcggattt |
8354777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 43144349 - 43144641
Alignment:
| Q |
12 |
acagatgatatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaaca |
111 |
Q |
| |
|
||||| |||||||| ||| |||| |||| | |||||||||||| ||||||| |||||||| |||||||||||| || |||||| |||| ||| |
|
|
| T |
43144349 |
acagaagatatagttaaactggaaagtgcattattagatatgcaaaggacttttgcatcctgaatcaaagaacaatccctaagtaccaaattatttaact |
43144448 |
T |
|
| Q |
112 |
catgacagttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
211 |
Q |
| |
|
||||||||||| ||| ||||||||| | |||| ||| ||||||||||| |||| |||||| |||| ||| |||||||||||||||||| | |||||||| |
|
|
| T |
43144449 |
catgacagtttgaaaaagggtcagcatagtgatggtgtgttgcaacaaagttgacatatttgagatacaaagttcttaatgcaggcaagcgtagagattt |
43144548 |
T |
|
| Q |
212 |
tggacactttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt |
304 |
Q |
| |
|
||||||| || | | | ||||| || ||| |||| | ||||||||||||||||||||| | |||||||||||||||| |||||||| |
|
|
| T |
43144549 |
tggacacactgcaaccccgaaattccgaccatatgaaagcttgagaaatgtcaaagagtgagagactgagattaaagggagtaaatcagattt |
43144641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 8404254 - 8404062
Alignment:
| Q |
19 |
atatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| |||||||| ||||| |
|
|
| T |
8404254 |
atatagtcaaactggacagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaatcacaaaacctgagcaccaaagtattcaacgcatgaag |
8404155 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattt |
211 |
Q |
| |
|
|||| |||||| ||| || | |||| ||||||||||||||| |||| |||| |||||| || ||||||||| ||||||| |||| |||||| |
|
|
| T |
8404154 |
gtttgaaaagggatcaacatagtgatcgtgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatacaggcaaatgaaaagattt |
8404062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 46 - 304
Target Start/End: Original strand, 8356024 - 8356282
Alignment:
| Q |
46 |
tagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacagttttgaaaggggtcagcacaatgatt |
145 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||| ||| ||| || |||||| |||| ||| ||||||||||| ||| ||||| ||| | |||| |
|
|
| T |
8356024 |
tagatatgcaaaggacttgtgcgtcctcaatcaatttacaatcatcaagtaccaaagtatttaactcatgacagtttgaaaaagggtcggcatagtgatg |
8356123 |
T |
|
| Q |
146 |
gtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttattcctactataa |
245 |
Q |
| |
|
||||||||||||||| |||| | ||| |||||||| |||||||||||||| || |||||||||||||||||| | | | | || ||||||||| |
|
|
| T |
8356124 |
gtgagttgcaacaaagttgacacattcgagatgcaaagttcttaatgcaggaaattgaagagattttggacacactacaacccagccatgcctactatat |
8356223 |
T |
|
| Q |
246 |
caaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt |
304 |
Q |
| |
|
|||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8356224 |
gaaagcttgagaaatgtcaaagagtgagaggtcgagattaaagggagtaactcagattt |
8356282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 23 - 201
Target Start/End: Original strand, 9576894 - 9577072
Alignment:
| Q |
23 |
agtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacagttt |
122 |
Q |
| |
|
|||||||| || ||||| | ||||||||||||||||||||||| |||| ||||||| |||| | |||| ||||| |||||||||| ||||||| |
|
|
| T |
9576894 |
agtcaaatgtgaaagtgtataattagatatgcagaggacttgtgtttccttaatcaaacaacaataaccgagcaccaatgtattcaacacgagacagttc |
9576993 |
T |
|
| Q |
123 |
tgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagt |
201 |
Q |
| |
|
|||||| |||||||| ||| ||| ||||||| |||| | ||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
9576994 |
gaaaagggatcagcacagtgactgttagttgcagcaaagtagaagtattcaagatgcaaggttcttaatgcaggcaagt |
9577072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 462
Target Start/End: Complemental strand, 8416567 - 8416506
Alignment:
| Q |
401 |
aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaagacataaatt |
462 |
Q |
| |
|
|||||| |||||||| || |||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
8416567 |
aatagttagattaagtagggaatatgaatgatctctaatggacagaacccaagacataaatt |
8416506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 300
Target Start/End: Complemental strand, 8404031 - 8403967
Alignment:
| Q |
236 |
cctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag |
300 |
Q |
| |
|
||||| |||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| |
|
|
| T |
8404031 |
cctacgataagaaagctcaagaaatgtcaaagagtgagaggttaagattaaaggtagtaactcag |
8403967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 454
Target Start/End: Original strand, 8359437 - 8359490
Alignment:
| Q |
401 |
aatagtaagattaagcagtgaatatgagtgatctctattggacagaacccaaga |
454 |
Q |
| |
|
||||||||||||||| || ||| |||||||||||||| | ||| |||||||||| |
|
|
| T |
8359437 |
aatagtaagattaagtagggaacatgagtgatctctactagaccgaacccaaga |
8359490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 19 - 462
Target Start/End: Complemental strand, 33084454 - 33084019
Alignment:
| Q |
19 |
atatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | | |||||||||| |||||||||| ||||| |
|
|
| T |
33084454 |
atatagtcaaattggatagtgtctgattagacatgtagaggacttgtgcatcctcaatcaaagaacaaccactgagaaccaaagtattcaacacgtgaca |
33084355 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
218 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33084354 |
gtttggaaaggggtcagcacaatgattgtgagttgcaaagaagttgaaaaattgaagatgcaaggttcttaatgcaggcaagtgaagagattttggacac |
33084255 |
T |
|
| Q |
219 |
tttgtatctgtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaaggga----gtaactcagattttgga---cac |
311 |
Q |
| |
|
|||| |||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
33084254 |
tttg---------cattcctaccataagaaagctcaagaaatgtcaaagagtgagagccaaagattaaagggagtacgtaactcagattttggacagcac |
33084164 |
T |
|
| Q |
312 |
ttcccatacccgttaattttcaaagagagtagtggatttatattaatgagtttatatagctcttcttcaccaccacgcatccaagcattaatagtaagat |
411 |
Q |
| |
|
|| | ||| ||||||||||||||||| ||||||||||| |||| ||||||| |||| ||| ||| ||| |||||||| ||| || |||||||| |
|
|
| T |
33084163 |
gaccgacgcccattaattttcaaagagagaagtggatttattttaacgagtttacataggtctcctt--cca----gcatccaaccatcaacagtaagat |
33084070 |
T |
|
| Q |
412 |
taagcagtgaatatgagtgatctctattggacagaacccaagacataaatt |
462 |
Q |
| |
|
|||| |||||| | |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
33084069 |
taagtagtgaacaggagtgatctctactggacagaatccaagacataaatt |
33084019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 47 - 235
Target Start/End: Complemental strand, 24845504 - 24845317
Alignment:
| Q |
47 |
agatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgacagttttgaaaggggtcagcacaatgattg |
146 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||| || || | | || || ||| |||| ||||||||||||||| |||| |||||||| | |||| | |
|
|
| T |
24845504 |
agatatgcaaaggatttgtgcatcctcactcaatgagcacccagtaagtactaaagtatttaacacatgacagttt-gaaaaaggtcagcatagtgatgg |
24845406 |
T |
|
| Q |
147 |
tgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttggacactttgtatctgtgttatt |
235 |
Q |
| |
|
|||||||| ||||| |||| | |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
24845405 |
tgagttgctacaaagttgacacatttgagatgcaaggttcttactgcaggcaagtgaagagattttggacactttgtatccgtgttatt |
24845317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 24844665 - 24844593
Alignment:
| Q |
228 |
gtgttattcctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcag |
300 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||| |
|
|
| T |
24844665 |
gtgttattcctactataagaaagatcaagaaatgtcaaagaatgagagccaaagattgaagagagtaactcag |
24844593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 5476802 - 5476606
Alignment:
| Q |
19 |
atatagtcaaattggatagtgtctgattagatatgcagaggacttgtgcatcctcaatcaaagaacagctatcgagaaccaaaatattcaacacatgaca |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||| |||||| |||||||| ||||| |
|
|
| T |
5476802 |
atatagtcaaattggacagtgtctgattagatatgcagaggactagtgcatcctcaatcaaataacaacacctgagcaccaaagtattcaacgcatgaag |
5476703 |
T |
|
| Q |
119 |
gttttgaaaggggtcagcacaatgattgtgagttgcaacaaacttgaaatatttaagatgcaaggttcttaatgcaggcaagtgaagagattttgga |
215 |
Q |
| |
|
|||| |||||| ||| || | |||| | ||||||||||||| |||| |||| |||||| || ||||||||||||||||| || |||||||||||| |
|
|
| T |
5476702 |
gtttgaaaagggatcaacatagtgatcgcgagttgcaacaaagttgacgtattcaagatgtaaagttcttaatgcaggcaaatgtagagattttgga |
5476606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 5476570 - 5476502
Alignment:
| Q |
236 |
cctactataacaaagatcaagaaatgtcaaagagtgagagccaaagattaaagggagtaactcagattt |
304 |
Q |
| |
|
||||| |||| |||| ||||| |||||||| |||| |||| | || |||||||||||||| |||||||| |
|
|
| T |
5476570 |
cctacgataagaaagctcaaggaatgtcaaggagttagaggctaaaattaaagggagtaaatcagattt |
5476502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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