View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_17 (Length: 438)
Name: NF12194_low_17
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 20 - 425
Target Start/End: Original strand, 52987751 - 52988156
Alignment:
| Q |
20 |
ttccatatggtaaacattaatgtgcataaacaagattgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataa |
119 |
Q |
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| T |
52987751 |
ttccatatggtaaacattaatttgcataaacaagattgctaactttgttgcttatgctgcctggagtcagttacacctattctgtaacaatttctgataa |
52987850 |
T |
|
| Q |
120 |
acctacaaaactaccagcccctgaatgtccatgcctgccacagcattccttcatgtagctcttgcaacatccaccaacttctctcttgtcaaaactaatg |
219 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52987851 |
acctacgaaactaccagcccctgaatgtccatgcctgccacagcattccttcatgtagctcttgcaacatccaccaacttctctcttgtcaaaactaatg |
52987950 |
T |
|
| Q |
220 |
caagcatgcataattgacgatccgatcgattcctttgaatagccctcattcttgcaacatggactaacttccctctcatttggaccctcacagccaccac |
319 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52987951 |
caagcatgcataattgacgattctatcgattcctttgaatagccctcattcttgcaacatggactaacttccctctcatttggaccctcacagccaccac |
52988050 |
T |
|
| Q |
320 |
acacaacaggcaatttggggcagtctgtacaagaatctttttctttctctgccagacttgaacaaccatgcatcgaggctaattcaacgtgctcggttat |
419 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52988051 |
acacaacaggcaatttggggcagtctttacaagaatctttttctttctctgccagatttgaacaaccatgcatcgaggctaattcaacgtgctcggttat |
52988150 |
T |
|
| Q |
420 |
gatgtc |
425 |
Q |
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|||||| |
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| T |
52988151 |
gatgtc |
52988156 |
T |
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