View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_18 (Length: 419)
Name: NF12194_low_18
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 36874090 - 36873686
Alignment:
| Q |
16 |
tgagcaaaacatatttatgttacaaaacttaataaatcttcattcttctggtttaaac-------acatcatgtgcaggaagagatttagattcggtgtt |
108 |
Q |
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| T |
36874090 |
tgagcaaaacatatttatgttacaaaacttaataaatcttcattcttctggtgtaaactgtaaacacatcatgtgcagtaagagatttagattcggtgtt |
36873991 |
T |
|
| Q |
109 |
ttgtatattgtatttcatatgctaaacaaatacatcacatgtgcaactcggataagaaacacaaacaacatcattagaacaatctataaaaataaaaaca |
208 |
Q |
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| T |
36873990 |
ttgtatattgtatttcacatgctaaacaaatacatcacatgtgcaactcggataagaaacacaaacaacatcattagaacaatctataaaaataaaaaca |
36873891 |
T |
|
| Q |
209 |
tcattattagaacaaagactattttccttgaccaactaaaatggaatatataaactttatttttataagtttcaaccaattaagtaattccaaatctagc |
308 |
Q |
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| T |
36873890 |
tcattattagaacaaagactattttccttgaccaactaaaatggaatatataaactttatttttataagtttcaaccaattaagtaattccaaatcgagc |
36873791 |
T |
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| Q |
309 |
ttaaatattaatcgaattga-------------atatcaagataccattaatgagcatttcatttcacaccaattctttagaagctcaagccattccgta |
395 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36873790 |
ttaaatattaatcgaattgaatatgcatataccatatcaagataccattaatgagcatttcatttcacaccaattctttagaagctcaagccattccgta |
36873691 |
T |
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| Q |
396 |
caagt |
400 |
Q |
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| T |
36873690 |
caagt |
36873686 |
T |
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