View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12194_low_19 (Length: 402)

Name: NF12194_low_19
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12194_low_19
NF12194_low_19
[»] chr7 (19 HSPs)
chr7 (49-389)||(19309143-19309492)
chr7 (49-389)||(12934611-12934959)
chr7 (57-389)||(16538950-16539293)
chr7 (57-389)||(16626369-16626712)
chr7 (109-389)||(42572159-42572439)
chr7 (113-389)||(17495617-17495880)
chr7 (113-389)||(17557334-17557597)
chr7 (174-385)||(43893087-43893298)
chr7 (144-389)||(21080675-21080920)
chr7 (217-389)||(2234332-2234511)
chr7 (210-361)||(47176852-47177003)
chr7 (274-387)||(32212419-32212532)
chr7 (262-386)||(33238286-33238410)
chr7 (262-386)||(47994084-47994208)
chr7 (262-386)||(47999259-47999383)
chr7 (262-386)||(33243463-33243587)
chr7 (57-207)||(32212258-32212421)
chr7 (49-152)||(43893295-43893406)
chr7 (49-102)||(47176760-47176812)
[»] scaffold0060 (1 HSPs)
scaffold0060 (70-389)||(37224-37553)
[»] chr6 (15 HSPs)
chr6 (49-382)||(34142310-34142651)
chr6 (49-382)||(34154926-34155267)
chr6 (109-389)||(31981777-31982057)
chr6 (57-387)||(2817687-2818026)
chr6 (203-385)||(34376147-34376329)
chr6 (216-380)||(24191080-24191244)
chr6 (259-380)||(24192220-24192341)
chr6 (262-386)||(22697930-22698054)
chr6 (49-159)||(24190947-24191066)
chr6 (49-159)||(24192056-24192175)
chr6 (262-389)||(22703106-22703236)
chr6 (259-316)||(6728190-6728247)
chr6 (262-389)||(21401966-21402096)
chr6 (291-389)||(29491005-29491106)
chr6 (345-389)||(21396924-21396968)
[»] chr4 (21 HSPs)
chr4 (57-389)||(9763556-9763898)
chr4 (49-385)||(13710887-13711233)
chr4 (62-389)||(13695376-13695710)
chr4 (109-389)||(41393459-41393738)
chr4 (109-382)||(47045919-47046180)
chr4 (57-389)||(53797843-53798185)
chr4 (124-389)||(51019003-51019254)
chr4 (262-386)||(39999353-39999477)
chr4 (262-386)||(40004311-40004435)
chr4 (262-386)||(54343487-54343611)
chr4 (262-386)||(54348641-54348765)
chr4 (262-386)||(36354426-36354550)
chr4 (262-386)||(36359612-36359736)
chr4 (262-389)||(8985145-8985275)
chr4 (262-389)||(13700735-13700865)
chr4 (262-389)||(21304693-21304823)
chr4 (262-389)||(8980025-8980155)
chr4 (262-389)||(21299573-21299703)
chr4 (262-389)||(54991701-54991831)
chr4 (262-389)||(54990550-54990680)
chr4 (193-258)||(4205911-4205976)
[»] scaffold0166 (2 HSPs)
scaffold0166 (49-385)||(13270-13616)
scaffold0166 (57-389)||(18746-19073)
[»] chr3 (17 HSPs)
chr3 (49-385)||(3476476-3476822)
chr3 (109-382)||(54270866-54271139)
chr3 (49-386)||(3481940-3482290)
chr3 (109-389)||(34128771-34129050)
chr3 (124-363)||(30338368-30338607)
chr3 (44-389)||(17358052-17358408)
chr3 (57-313)||(30341510-30341771)
chr3 (231-389)||(10321657-10321815)
chr3 (229-382)||(4117312-4117465)
chr3 (262-386)||(15762717-15762841)
chr3 (262-386)||(15767878-15768002)
chr3 (262-386)||(20090349-20090473)
chr3 (262-386)||(20095474-20095598)
chr3 (262-389)||(17368944-17369074)
chr3 (262-389)||(55129015-55129145)
chr3 (287-332)||(10321816-10321861)
chr3 (49-104)||(4117226-4117280)
[»] chr5 (15 HSPs)
chr5 (49-389)||(36254050-36254386)
chr5 (57-389)||(24776363-24776690)
chr5 (57-389)||(1413629-1413933)
chr5 (57-389)||(24770908-24771235)
chr5 (57-389)||(26709317-26709637)
chr5 (57-389)||(26979051-26979371)
chr5 (262-389)||(17505178-17505308)
chr5 (262-389)||(17510283-17510413)
chr5 (262-389)||(42019798-42019928)
chr5 (262-389)||(41858818-41858941)
chr5 (262-389)||(42024578-42024708)
chr5 (262-389)||(43579885-43580015)
chr5 (166-234)||(1413444-1413512)
chr5 (196-245)||(1413507-1413556)
chr5 (57-104)||(1413363-1413411)
[»] scaffold0594 (1 HSPs)
scaffold0594 (62-387)||(8755-9087)
[»] chr1 (11 HSPs)
chr1 (67-389)||(3584815-3585148)
chr1 (57-389)||(5730319-5730664)
chr1 (217-389)||(48246392-48246564)
chr1 (262-386)||(34317972-34318096)
chr1 (262-386)||(36684402-36684526)
chr1 (262-389)||(27711548-27711678)
chr1 (262-389)||(37404158-37404286)
chr1 (262-389)||(37409277-37409407)
chr1 (262-389)||(27716668-27716798)
chr1 (262-389)||(11250863-11250993)
chr1 (49-93)||(48246238-48246282)
[»] chr2 (10 HSPs)
chr2 (57-389)||(4163129-4163458)
chr2 (109-389)||(28751352-28751610)
chr2 (262-386)||(42728307-42728431)
chr2 (262-386)||(42723138-42723262)
chr2 (262-386)||(44096586-44096710)
chr2 (262-389)||(40392544-40392674)
chr2 (263-389)||(40518213-40518341)
chr2 (262-386)||(44754293-44754407)
chr2 (262-386)||(44759459-44759573)
chr2 (263-325)||(40519925-40519987)
[»] chr8 (17 HSPs)
chr8 (175-389)||(21642934-21643147)
chr8 (175-389)||(21642559-21642772)
chr8 (175-389)||(21643309-21643522)
chr8 (175-389)||(21641434-21641647)
chr8 (175-389)||(21641809-21642022)
chr8 (175-389)||(21642184-21642397)
chr8 (198-389)||(24884927-24885118)
chr8 (175-389)||(21643749-21643962)
chr8 (227-389)||(43998949-43999111)
chr8 (44-277)||(17955382-17955602)
chr8 (262-386)||(32010810-32010934)
chr8 (262-386)||(32015984-32016108)
chr8 (268-333)||(42514180-42514245)
chr8 (333-389)||(17955614-17955670)
chr8 (262-334)||(2165553-2165625)
chr8 (112-152)||(42514139-42514179)
chr8 (49-92)||(24885142-24885185)
[»] scaffold0055 (1 HSPs)
scaffold0055 (262-386)||(3308-3432)
[»] scaffold0052 (1 HSPs)
scaffold0052 (262-386)||(81103-81227)
[»] scaffold0014 (2 HSPs)
scaffold0014 (262-386)||(26657-26781)
scaffold0014 (262-386)||(31829-31953)
[»] scaffold0517 (1 HSPs)
scaffold0517 (262-389)||(3788-3918)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 49 - 389
Target Start/End: Original strand, 19309143 - 19309492
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcacac 138  Q
    ||||||| |||||||||||||||||| ||| ||||||||||||| ||||||||||||||||          |||||||||||| |||||||||| | |||    
T  19309143 gggccttaaagaaatatattttttggcgcttagaaaatgaaaaa-taattttttatttgctgctccgagtttcccgcacgcggcggaccaagtcccgcac 19309241  T
Q  139 gtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcgg 238  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||    
T  19309242 gtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcgcgagccgggtcggcgg 19309341  T
Q  239 agaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccct 338  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  19309342 agaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcaaatcctcttctctggttttctcccct 19309441  T
Q  339 tctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  19309442 tctcatctccctcggtttgtgttgacgaactgttcttttcctcctccttct 19309492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 49 - 389
Target Start/End: Complemental strand, 12934959 - 12934611
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct---------tcccgcacgcggaggaccaagtctcacacg 139  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  12934959 gggccttatagaaatatattttttggtgctcagaaaat-aaaaaataattttttatttgctctccgatattcccgcacgcggaggaccaagtctcacacg 12934861  T
Q  140 tttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcgga 239  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  12934860 tttttcacacgcgcaagcttccgctccacgtttccgcgccgtggttaccgttacgtgggtcgtgggctgagtttgccgggtcgcgaaccgggtcggcgga 12934761  T
Q  240 gaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccctt 339  Q
    |||||| |||   |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12934760 gaaaacgaggtcgaaacatctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctcccctt 12934661  T
Q  340 ctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12934660 ctcatctccctcggtttgtgttgatgaaccgttcttttcttcctccttct 12934611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 16538950 - 16539293
Alignment:
Q  57 aagaaatatatttttt-ggtgctcagaaaatgaaaaaa-taattttttatttgct----------tcccgcacgcggaggaccaagtctcacacgttttt 144  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  16538950 aagaaatatatttttttggtgctcagaaaatgaaaaaaataattttttatttgctgctccgcgattcccgcacgcggaggaccaagtctcacacgttttt 16539049  T
Q  145 cacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaa 244  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||  |||||||||||||||    
T  16539050 cacacgcgcaagcttcagctccacgtttccgcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccaggtcggcggagaaaa 16539148  T
Q  245 caaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcat 344  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||| |||||||    
T  16539149 cgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctcccattctcat 16539248  T
Q  345 ctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  16539249 ctccctcggtttgtgttgacgaacagttcttttcttcctccttct 16539293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 57 - 389
Target Start/End: Complemental strand, 16626712 - 16626369
Alignment:
Q  57 aagaaatatatttttt-ggtgctcagaaaatgaaaaaa-taattttttatttgct----------tcccgcacgcggaggaccaagtctcacacgttttt 144  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||          |||||||||||||||||||||||||||||||||||    
T  16626712 aagaaatatatttttttggtgctcagaaaatgaaaaaaataattttttatttgctgctccgcgattcccgcacgcggaggaccaagtctcacacgttttt 16626613  T
Q  145 cacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaa 244  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||  |||||||||||||||    
T  16626612 cacacgcgcaagcttcagctccacgtttccgcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccaggtcggcggagaaaa 16626514  T
Q  245 caaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcat 344  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||| |||||||    
T  16626513 cgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaattaaatcctcttctctggttttctcccattctcat 16626414  T
Q  345 ctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  16626413 ctccctcggtttgtgttgacgaacagttcttttcttcctccttct 16626369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 109 - 389
Target Start/End: Complemental strand, 42572439 - 42572159
Alignment:
Q  109 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  42572439 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttctgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctg 42572340  T
Q  209 agtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgaga 308  Q
    |||||| |||||||||||| ||||||||||||||||| |||   |  || ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42572339 agtttgccgggtcgcgaaccgggtcggcggagaaaacgaggtcgaaacctctctataaatagagaactcgggaatgggattcttcactccaaaaccgaga 42572240  T
Q  309 atcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42572239 atcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcctcctccttct 42572159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 113 - 389
Target Start/End: Complemental strand, 17495880 - 17495617
Alignment:
Q  113 cgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtt 212  Q
    |||||||||||||||||||||||||||||||||||||| |||             |||||||||||  |||||||||||| |||||||||||||||||||    
T  17495880 cgcacgcggaggaccaagtctcacacgtttttcacacgagca-------------cgtttccgcgtggtggttaccgttatgtgggtcgtgggctgagtt 17495794  T
Q  213 tggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcg 312  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  17495793 tggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattctttactccaaaaccgagaattg 17495694  T
Q  313 aatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17495693 aatcctcttctctggttttctcgccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 17495617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 113 - 389
Target Start/End: Original strand, 17557334 - 17557597
Alignment:
Q  113 cgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtt 212  Q
    |||||||||||||||||||||||||||||||||||||| |||             |||||||||||  |||||||||||| |||||||||||||||||||    
T  17557334 cgcacgcggaggaccaagtctcacacgtttttcacacgagca-------------cgtttccgcgtggtggttaccgttatgtgggtcgtgggctgagtt 17557420  T
Q  213 tggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcg 312  Q
    ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  17557421 tggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattctttactccaaaaccgagaattg 17557520  T
Q  313 aatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17557521 aatcctcttctctggttttctcgccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 17557597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 174 - 385
Target Start/End: Complemental strand, 43893298 - 43893087
Alignment:
Q  174 cgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagaga 273  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  43893298 cgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattccccgctataaatagaga 43893199  T
Q  274 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttc 373  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43893198 gctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaatcgttc 43893099  T
Q  374 ttttcttcctcc 385  Q
    ||||||||||||    
T  43893098 ttttcttcctcc 43893087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 144 - 389
Target Start/End: Original strand, 21080675 - 21080920
Alignment:
Q  144 tcacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaa 242  Q
    ||||||||||||||||| | ||||||||||| |||| ||| |||||||| | ||||||||||||| |  |||||||||||||||| ||||||| ||||||    
T  21080675 tcacacgcgcaagcttcagttccacgtttccacgtcgtgggttaccgttgc-tgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggtggagaa 21080773  T
Q  243 aacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctc 342  Q
    ||| |||  || ||||||||||||||||||||||||||| | | |||||||||| |||||| |||||||||||| |||||||||||||||||||||||||    
T  21080774 aacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcacttcaaaactgagaatcgaatcctcttctctggttttctccccttctc 21080873  T
Q  343 atctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  21080874 atcttcctcggtttgtgttgacgaaccgttcttttcttcctccttct 21080920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 217 - 389
Target Start/End: Original strand, 2234332 - 2234511
Alignment:
Q  217 gggtcgcgaactgggtcggcggagaaaacaaggaa-------aattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaa 309  Q
    ||||||||||| ||||||||||||||||| || ||       || ||||||||||||||||||||||||||| | | |||||||||||||||||||||||    
T  2234332 gggtcgcgaaccgggtcggcggagaaaacgagaaacgaggtcaaatcccctctataaatagagagctcgggattagtattcttcactccaaaaccgagaa 2234431  T
Q  310 tcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2234432 tcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 2234511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 210 - 361
Target Start/End: Original strand, 47176852 - 47177003
Alignment:
Q  210 gtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaa 309  Q
    |||||||||||||||||| |||||||||||||||||||||   |  || |||||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  47176852 gtttggcgggtcgcgaaccgggtcggcggagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgagattcttcactccaaaaccgataa 47176951  T
Q  310 tcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  47176952 tcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgtt 47177003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 32212419 - 32212532
Alignment:
Q  274 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttc 373  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  32212419 gctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctgattttctccccttctcatctccctcggtttgtgttgatgaaccgttc 32212518  T
Q  374 ttttcttcctcctt 387  Q
    ||||||||||||||    
T  32212519 ttttcttcctcctt 32212532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 33238410 - 33238286
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  33238410 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 33238311  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  33238310 gacgaatcgttcttttcctcctcct 33238286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 47994208 - 47994084
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  47994208 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 47994109  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  47994108 gacgaatcgttcttttcctcctcct 47994084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 47999383 - 47999259
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  47999383 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 47999284  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  47999283 gacgaatcgttcttttcctcctcct 47999259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 33243587 - 33243463
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  33243587 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 33243488  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    ||| || |||||||||| |||||||    
T  33243487 gacaaatcgttcttttcctcctcct 33243463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 57 - 207
Target Start/End: Original strand, 32212258 - 32212421
Alignment:
Q  57 aagaaatatatttttt-ggtgctcag-aaaatgaaaaaa-taattttttatttgct----------tcccgcacgcggaggaccaagtctcacacgtttt 143  Q
    |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||          |||||||||||||||| |||||||||||||||||    
T  32212258 aagaaatatatttttttggtgctcaggaaaatgaaaaaaataattttttatttgctacttcgagattcccgcacgcggaggatcaagtctcacacgtttt 32212357  T
Q  144 tcacacgcgcaagcttccgctccacgtttccgcgtcat-ggttaccgttacgtgggtcgtgggct 207  Q
     |||||||||||||||| |||||||||||||||||| | |||||||||||| ||||||| |||||    
T  32212358 ccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgagggct 32212421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 152
Target Start/End: Complemental strand, 43893406 - 43893295
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgc---------ttcccgcacgcggaggaccaagtctcacacg 139  Q
    |||||||  ||||||||||||||||| ||||||||||||| |||||||||||||||||||         ||||||||||||||||| |||||| | ||||    
T  43893406 gggccttatagaaatatattttttggcgctcagaaaatga-aaaataattttttatttgctctccgagattcccgcacgcggaggatcaagtcccgcacg 43893308  T
Q  140 tttttcacacgcg 152  Q
    |||||||||||||    
T  43893307 tttttcacacgcg 43893295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 47176760 - 47176812
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataatttttt 102  Q
    |||||||  ||||||||| ||||||| |||||||||||| ||||||||||||||    
T  47176760 gggccttatagaaatataatttttggcgctcagaaaatg-aaaaataatttttt 47176812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 70 - 389
Target Start/End: Complemental strand, 37553 - 37224
Alignment:
Q  70 tttggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagctt 159  Q
    ||||||||||| |||||||||||| |||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  37553 tttggtgctcataaaatgaaaaaagaattttttatttgctgctccgagattcccgcacgcggaggaccaagtctcacacgtttttcacacgcggaagctt 37454  T
Q  160 ccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccc 259  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||  || ||| |    
T  37453 ccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaaccaggtcggcggagaaaacgaggtcaaatcctc 37354  T
Q  260 tctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtg 359  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  37353 tctataaatagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttctcatcttcctcggtttgtg 37254  T
Q  360 ttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||||||||||||||||||    
T  37253 ttgacgaaccgttcttttcttcctccttct 37224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 49 - 382
Target Start/End: Complemental strand, 34142651 - 34142310
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct---------tcccgcacgcggaggaccaagtctcacacg 139  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||||||         |||||||| ||||||||||| || ||||||    
T  34142651 gggccttatagatatatattttttggtgctcagaaaatgaaaaaata-ttttttatttgctctccgagtttcccgcacacggaggaccaaatcccacacg 34142553  T
Q  140 tttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcgga 239  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34142552 tttttcacacgtgcaagcttcctctccacgtttccgcgtcgtggttaccattacgtgggtcgtgggctgagtttggcgggtcgcgaaccgggtcggcgga 34142453  T
Q  240 gaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccctt 339  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34142452 gaaaacgaggaaaattcccctctataaataaagtgctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctcccctt 34142353  T
Q  340 ctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34142352 ctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 34142310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 49 - 382
Target Start/End: Complemental strand, 34155267 - 34154926
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct---------tcccgcacgcggaggaccaagtctcacacg 139  Q
    |||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||||||         |||||||| ||||||||||| || ||||||    
T  34155267 gggccttatagatatatattttttggtgctcagaaaatgaaaaaata-ttttttatttgctctccgagtttcccgcacacggaggaccaaatcccacacg 34155169  T
Q  140 tttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcgga 239  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34155168 tttttcacacgtgcaagcttcctctccacgtttccgcgtcgtggttaccattacgtgggtcgtgggctgagtttggcgggtcgcgaaccgggtcggcgga 34155069  T
Q  240 gaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccctt 339  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34155068 gaaaacgaggaaaattcccctctataaataaagtgctcgggaattggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctcccctt 34154969  T
Q  340 ctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  34154968 ctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 34154926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 109 - 389
Target Start/End: Complemental strand, 31982057 - 31981777
Alignment:
Q  109 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctg 208  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||    
T  31982057 ttcccgcacgcggaggaccaagtctcacacatttttcacacgtgcaagcttccgctccacgttttcgcgtcgtggttaccgttacgtgggtcgtgggatg 31981958  T
Q  209 agtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgaga 308  Q
     |||||||||||||||||| ||||||||||||||||| | |   | ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  31981957 ggtttggcgggtcgcgaaccgggtcggcggagaaaacgaagtcgaatcccctctataaatagagagctcgggattggtattcttcactccaaaaccgaga 31981858  T
Q  309 atcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31981857 atcgaatactcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcctcctccttct 31981777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 57 - 387
Target Start/End: Original strand, 2817687 - 2818026
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaatgaaaaaataattttttattt----------gcttcccgcacgcggaggaccaagtctcacacgtttttca 146  Q
    ||||||||||||||| |||||||||||||   ||||||||||||||||||          | ||||| ||||||||| |||||||||||| |||||| ||    
T  2817687 aagaaatatattttt-ggtgctcagaaaaatgaaaaataattttttattttttgctccgagattcccacacgcggag-accaagtctcacccgttttcca 2817784  T
Q  147 cacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaac 245  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |  |||||||||||||||| |||||||||||||||||    
T  2817785 cacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggagaaaac 2817884  T
Q  246 aaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatc 345  Q
     |||  || |||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  2817885 gaggtcaaatcccctctataaatagagagctcgggaatgagattctttactccaaaaccaagaatcgaatcctcttctctggttttctccccttctcatc 2817984  T
Q  346 tccctcggtttgtgttgacgaaccgttcttttcttcctcctt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2817985 tccctcggtttgtgttgacgaaccgttcttttcttcctcctt 2818026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 203 - 385
Target Start/End: Complemental strand, 34376329 - 34376147
Alignment:
Q  203 gggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaa 302  Q
    |||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376329 gggctgggtttggcgggtcgcgaaccgggtcggcggagaaaacgaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaa 34376230  T
Q  303 ccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctcc 385  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34376229 ccgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctcc 34376147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 216 - 380
Target Start/End: Original strand, 24191080 - 24191244
Alignment:
Q  216 cgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaat 315  Q
    |||||||||||| |||||| || ||||||| |||   |  || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24191080 cgggtcgcgaaccgggtcgacgaagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaat 24191179  T
Q  316 catcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttctt 380  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  24191180 cctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgtttttttctt 24191244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 259 - 380
Target Start/End: Original strand, 24192220 - 24192341
Alignment:
Q  259 ctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  24192220 ctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgt 24192319  T
Q  359 gttgacgaaccgttcttttctt 380  Q
    |||||||||||||| |||||||    
T  24192320 gttgacgaaccgtttttttctt 24192341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 22697930 - 22698054
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  22697930 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 22698029  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  22698030 gacgaatcgttcttttcctcctcct 22698054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 24190947 - 24191066
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct---------tcccgcacgcggaggaccaagtctcacacg 139  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  24190947 gggccttatagaaatatattttttggtgctcagaaaataaaaaaataattttttatttgctctccgagattcccgcacgcggaggaccaagtctcacacg 24191046  T
Q  140 tttttcacacgcgcaagctt 159  Q
    ||||||||||||||||||||    
T  24191047 tttttcacacgcgcaagctt 24191066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 24192056 - 24192175
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct---------tcccgcacgcggaggaccaagtctcacacg 139  Q
    |||||||  ||||||||||||||||||||||| ||||| ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  24192056 gggccttatagaaatatattttttggtgctcaaaaaataaaaaaataattttttatttgctctccgagattcccgcacgcggaggaccaagtctcacacg 24192155  T
Q  140 tttttcacacgcgcaagctt 159  Q
    ||||||||||||||||||||    
T  24192156 tttttcacacgcgcaagctt 24192175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 22703106 - 22703236
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  22703106 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 22703204  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  22703205 tgttgacgaaccgttctttctttcctccttct 22703236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 259 - 316
Target Start/End: Original strand, 6728190 - 6728247
Alignment:
Q  259 ctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6728190 ctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatc 6728247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 21402096 - 21401966
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctc----ggtttg 357  Q
    ||||||| ||||||| |||||| | |||| |||||| |||||  ||||||||||  |||||| |||||||||| ||| ||| ||||||||    ||||||    
T  21402096 tataaattgagagcttgggaatagtattcatcactcaaaaactaagaatcgaatactcttctttggttttctctcct-ctcttctccctcctgcggtttg 21401998  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  21401997 tgttgacgaaccgttctttctttcctccttct 21401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 29491005 - 29491106
Alignment:
Q  291 ttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttgtgttgacgaaccgttcttttcttcctcct 386  Q
    ||||||||||||| ||||||| |||  ||||||||| |||| || || |||| |||||||    ||||||||||||||||||||||||||| ||||||||    
T  29491005 ttcactccaaaactgagaatcaaatactcttctctgattttatctcc-tctcttctccctcccgcggtttgtgttgacgaaccgttctttttttcctcct 29491103  T
Q  387 tct 389  Q
    |||    
T  29491104 tct 29491106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 389
Target Start/End: Complemental strand, 21396968 - 21396924
Alignment:
Q  345 ctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||    
T  21396968 ctcccgcggtttgtgttgacgaaccgttctttctttcctccttct 21396924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 9763556 - 9763898
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaatg-aaaaaataattttttatttgc----------ttcccgcacgcggaggaccaagtctcacacgtttttc 145  Q
    |||||||| ||||||||| |||||||||||| |||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  9763556 aagaaata-attttttggcgctcagaaaatggaaaaaataattttttatttgccgctccgagattcccgcacgcggaggaccaagtctcacacgtttttc 9763654  T
Q  146 acacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaac 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||||    
T  9763655 acacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgggtttggcgggtcgcgaaccgggtcggaggagaaaac 9763754  T
Q  246 aaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatc 345  Q
     | |   | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9763755 gaagtcgaatcccctctataaatagagagctcgggattggtattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttctcatc 9763854  T
Q  346 tccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  9763855 tcccgcggtttgtgttgacgaaccgttcttttcttcctccttct 9763898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 49 - 385
Target Start/End: Complemental strand, 13711233 - 13710887
Alignment:
Q  49 gggcctttaagaaatatatttttt-ggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcaca 137  Q
    |||||||  ||||||||||||||| || ||||||||||||||||| ||||||||||||||||          ||||||||||||||||||||||| ||||    
T  13711233 gggccttatagaaatatatttttttggcgctcagaaaatgaaaaa-taattttttatttgctgctccgagtttcccgcacgcggaggaccaagtcccaca 13711135  T
Q  138 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcg 237  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||    
T  13711134 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcgcgaaccgggtcagcg 13711035  T
Q  238 gagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccc 337  Q
    ||||||||||||   |  || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  13711034 gagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctcccc 13710935  T
Q  338 ttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctcc 385  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  13710934 ttctcatctccctcggtttgtgttgacgaaccattcttttcttcctcc 13710887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 62 - 389
Target Start/End: Complemental strand, 13695710 - 13695376
Alignment:
Q  62 atatattttttggtgctcagaaaatgaaaaaataattttttatttgct---------tcccgcacgcggaggaccaagtctcacacgtttttcacacgcg 152  Q
    ||||||||||||||||||||||||| |||||||| |||||| ||||||         ||||||||||||||||||||||| |||||||||||||||||||    
T  13695710 atatattttttggtgctcagaaaat-aaaaaatattttttt-tttgctctccgagattcccgcacgcggaggaccaagtcccacacgtttttcacacgcg 13695613  T
Q  153 caagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaa 252  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||||||  |||       
T  13695612 caagtttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgagtttgccgggtcgcgaaccggttcgacggagaaaatgaggtcg 13695513  T
Q  253 attcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcg 352  Q
    |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  13695512 aaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatactcttctctggttttctccccttctcatctccctcg 13695413  T
Q  353 gtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||| |||| |||||||| ||||||||||    
T  13695412 gtttgtgttgacaaaccattcttttcctcctccttct 13695376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 109 - 389
Target Start/End: Complemental strand, 41393738 - 41393459
Alignment:
Q  109 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggct 207  Q
    |||| |||||||||||||||||||||||||||||| |||| ||| ||||||| |||||||||||||||||| ||| ||||||||   |||||||||||||    
T  41393738 ttcctgcacgcggaggaccaagtctcacacgttttccacatgcgtaagcttcagctccacgtttccgcgtcgtgggttaccgtttactgggtcgtgggct 41393639  T
Q  208 gagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgag 307  Q
     ||||||||||||||||||| ||||||||||||||||| |||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41393638 aagtttggcgggtcgcgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgag 41393539  T
Q  308 aatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||| ||||||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41393538 aatcgaatcctcttctctggttttctcccc--ctcatctccatcggtttgtgttgacgaaccgttcttttcttcctccttct 41393459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 109 - 382
Target Start/End: Original strand, 47045919 - 47046180
Alignment:
Q  109 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctg 208  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  47045919 ttcccgcacgcggaggaccaagtcccgcacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctg 47046018  T
Q  209 agtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgaga 308  Q
     |||||||||||||            ||||||||||| |||   |  || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47046019 ggtttggcgggtcg------------gcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgaga 47046106  T
Q  309 atcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  47046107 atcgaatcatcttctctggttttctccccttctcatctccctcaggttgtgttgacgaaccgttcttttcttcc 47046180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 57 - 389
Target Start/End: Complemental strand, 53798185 - 53797843
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaatgaaaaaataattttttattt-----------gcttcccgc-acgcggaggaccaagtctcacacgttttt 144  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||           | ||||||| |||| ||| |||||||||||||||||||     
T  53798185 aagaaatatattttttggtgctcagaaaaatgaaaaattattttttatttttttgctccgagattcccgccacgcagag-accaagtctcacacgttttc 53798087  T
Q  145 cacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaa 243  Q
    |||||||||| ||||| |||||||||||||||||| ||| |||||||||||  ||||||||||| |  |||||||||||||||| ||||||||||| |||    
T  53798086 cacacgcgcatgcttcagctccacgtttccgcgtcgtgggttaccgttacg--ggtcgtgggctaacgttggcgggtcgcgaaccgggtcggcggataaa 53797989  T
Q  244 acaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctca 343  Q
    || |||  || ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  53797988 acgaggtcaaatcccctctataaatagagagctcgggattagcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttctca 53797889  T
Q  344 tctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  53797888 tctccctcggtttgtgttgacgaactgttcttttcttcctccttct 53797843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 124 - 389
Target Start/End: Original strand, 51019003 - 51019254
Alignment:
Q  124 gaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcg 222  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||||| ||||| ||||||      
T  51019003 gaccaagtctcacacgttt--cacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctaagtttcgcgggt-- 51019097  T
Q  223 cgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttc 322  Q
              ||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  51019098 ----------cggcggagaaaacaaggtaaaatcctctctataaatagagacctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttc 51019187  T
Q  323 tctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51019188 tctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 51019254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 39999477 - 39999353
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  39999477 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 39999378  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  39999377 gacgaatcgttcttttcctcctcct 39999353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 40004435 - 40004311
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  40004435 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 40004336  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  40004335 gacgaatcgttcttttcctcctcct 40004311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 54343611 - 54343487
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  54343611 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 54343512  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  54343511 gacgaatcgttcttttcctcctcct 54343487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 54348765 - 54348641
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  54348765 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 54348666  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  54348665 gacgaatcgttcttttcctcctcct 54348641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 36354550 - 36354426
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||| | ||| | |||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  36354550 tataaattgagagctcagaaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 36354451  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  36354450 gacgaatcgttcttttcctcctcct 36354426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 36359736 - 36359612
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||| ||||| | |||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  36359736 tataaattgagagctcaggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 36359637  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
     ||||| |||||||||| |||||||    
T  36359636 aacgaatcgttcttttcctcctcct 36359612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 8985145 - 8985275
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  8985145 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 8985243  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  8985244 tgttgacgaaccgttctttctttcctccttct 8985275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 13700865 - 13700735
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  13700865 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 13700767  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  13700766 tgttgacgaaccgttctttctttcctccttct 13700735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 21304693 - 21304823
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  21304693 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 21304791  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  21304792 tgttgacgaaccgttctttctttcctccttct 21304823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 8980025 - 8980155
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| ||||||||| |||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  8980025 tataaattgagagctcgagaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 8980123  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  8980124 tgttgacgaaccgttctttctttcctccttct 8980155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 21299573 - 21299703
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | |||||| |||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  21299573 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 21299671  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  21299672 tgttgacgaaccgttctttctttcctccttct 21299703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 54991831 - 54991701
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| || ||||||||||| | |||||||||| |||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  54991831 tataaattgaaagctcgggaatagtattcttcacttcaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 54991733  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  || ||||||||    
T  54991732 tgttgacgaaccgttctttcttttctccttct 54991701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 54990550 - 54990680
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccct-tctcat--ctccctcggtttgt 358  Q
    ||||||| ||||||||||| || | ||||||||||||||||| ||||||| |||  |||||||| |||||||| ||| |||  |  ||||| ||||||||    
T  54990550 tataaattgagagctcgggtatagtattcttcactccaaaactgagaatcaaatactcttctcttgttttctctcctctctactccctcccgcggtttgt 54990649  T
Q  359 gttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||||||  |||||||||||    
T  54990650 gttgacgaaccgttctttctttcctccttct 54990680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 4205976 - 4205911
Alignment:
Q  193 cgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattccc 258  Q
    |||||||||||||||| |||| |||||||| |||| ||||||||||||||||  ||||||||||||    
T  4205976 cgtgggtcgtgggctgggtttagcgggtcgtgaaccgggtcggcggagaaaatgaggaaaattccc 4205911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 49 - 385
Target Start/End: Original strand, 13270 - 13616
Alignment:
Q  49 gggcctttaagaaatatatttttt-ggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcaca 137  Q
    |||||||  ||||||||||||||| || ||||||||||||||||| ||||||||||||||||          ||||||||||||||||||||||| ||||    
T  13270 gggccttatagaaatatatttttttggcgctcagaaaatgaaaaa-taattttttatttgctgctccgagtttcccgcacgcggaggaccaagtcccaca 13368  T
Q  138 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcg 237  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||    
T  13369 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcgcgaaccgggtcagcg 13468  T
Q  238 gagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccc 337  Q
    ||||||||||||   |  || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  13469 gagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccaagaatcgaatcctcttctctggttttctcccc 13568  T
Q  338 ttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctcc 385  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  13569 ttctcatctccctcggtttgtgttgacgaaccattcttttcttcctcc 13616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 18746 - 19073
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcacacgtttttca 146  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||          ||||||| |||||||||||||||||||              
T  18746 aagaaatatattttttggcgctcagaaaatgaaaaaataattttttatttgctgctccgagattcccgcatgcggaggaccaagtctcac---------- 18835  T
Q  147 cacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaaca 246  Q
         |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||||     
T  18836 -----gcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcacgaaccgggtcgacggagaaaacg 18930  T
Q  247 aggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatct 346  Q
    | |   | ||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  18931 aagtcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctccccttctcatct 19030  T
Q  347 ccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  19031 ccctcggtttgtgttgacgaaccgttcttttcctcctccttct 19073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 49 - 385
Target Start/End: Original strand, 3476476 - 3476822
Alignment:
Q  49 gggcctttaagaaatatatttttt-ggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcaca 137  Q
    |||||||  ||||||||||||||| || ||||||||||||||||| ||||||||||||||||          ||||||||||||||||||||||| ||||    
T  3476476 gggccttatagaaatatatttttttggcgctcagaaaatgaaaaa-taattttttatttgctgctccgagtttcccgcacgcggaggaccaagtcccaca 3476574  T
Q  138 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcg 237  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||    
T  3476575 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcgcgaaccgggtcagcg 3476674  T
Q  238 gagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctcccc 337  Q
    ||||||||||||   |  || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||    
T  3476675 gagaaaacaaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaacaagaatcgaatcctcttctctggttttctcccc 3476774  T
Q  338 ttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctcc 385  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||    
T  3476775 ttctcatctccctcggtttgtgttgacgaaccattcttttcttcctcc 3476822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 109 - 382
Target Start/End: Complemental strand, 54271139 - 54270866
Alignment:
Q  109 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggct 207  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||||    
T  54271139 ttcccgcacgcggaggaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggct 54271041  T
Q  208 gagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgag 307  Q
     ||||||||| ||||||||| ||||||||||||||||| |||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54271040 aagtttggcgcgtcgcgaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgag 54270941  T
Q  308 aatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 382  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54270940 aatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 54270866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 49 - 386
Target Start/End: Original strand, 3481940 - 3482290
Alignment:
Q  49 gggcctttaagaaatatatttttt-ggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcaca 137  Q
    |||||||  ||||||||||||||| || ||| ||||||||||||| ||||||||||||||||          ||||||||||||||||||||||| | ||    
T  3481940 gggccttatagaaatatatttttttggcgcttagaaaatgaaaaa-taattttttatttgctgctccgagtttcccgcacgcggaggaccaagtcccgca 3482038  T
Q  138 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgg---gctgagtttggcgggtcgcgaactgggtcg 234  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||| |||| ||||||| ||||| ||||||    
T  3482039 cgtttttcacacgcgcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtggtgggctgggtttagcgggtcacgaaccgggtcg 3482138  T
Q  235 gcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctc 334  Q
    ||||||||||| |||   |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  3482139 gcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctc 3482238  T
Q  335 cccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctcct 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3482239 cccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctcct 3482290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 109 - 389
Target Start/End: Original strand, 34128771 - 34129050
Alignment:
Q  109 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggct 207  Q
    ||||||||| ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| |||| ||| |||||||| | |||||||||||||    
T  34128771 ttcccgcacacggag-accaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccacgtcgtgggttaccgttgc-tgggtcgtgggct 34128868  T
Q  208 gagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgag 307  Q
     |  |||||||||||||||| ||||||||||||||||| |||  || |||||||||||||||||||| |||||| | | ||||||||||||||||| |||    
T  34128869 aacgttggcgggtcgcgaaccgggtcggcggagaaaacgaggtgaaatcccctctataaatagagaggtcgggatttgcattcttcactccaaaactgag 34128968  T
Q  308 aatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  34128969 aatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcatccttct 34129050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 124 - 363
Target Start/End: Original strand, 30338368 - 30338607
Alignment:
Q  124 gaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcg 222  Q
    |||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||||||  |||||||||||||    
T  30338368 gaccaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctatgtttggcgggtcg 30338466  T
Q  223 cgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttc 322  Q
    | ||| ||||||||||||||||| |||  || ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||    
T  30338467 caaaccgggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttggattcttcactccaaaaccgagaatcgaatcctcttc 30338566  T
Q  323 tctggttttctccccttctcatctccctcggtttgtgttga 363  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30338567 tctggttttctccccttctcatctccctcggtttgtgttga 30338607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 44 - 389
Target Start/End: Complemental strand, 17358408 - 17358052
Alignment:
Q  44 ggctggggcctttaagaaatatatttttt-ggtgctcag-aaaatgaaaaaataattttttattt-----------gcttcccgcacgcggaggaccaag 130  Q
    |||| |||| || |||||||||||||||| ||||||||| |||||| ||||||||| ||||||||           | ||||||||| |||| |||||||    
T  17358408 ggcttgggctttaaagaaatatatttttttggtgctcagaaaaatggaaaaataatattttatttttttgctccgagattcccgcacacgga-gaccaag 17358310  T
Q  131 tctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcat-ggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactg 229  Q
    ||||||||||||| |||||||||||||||| |||||||||||||| ||| | |||||||||| | ||||||||||||| |  ||||||||||||||||      
T  17358309 tctcacacgttttccacacgcgcaagcttcagctccacgtttccgagtcgtgggttaccgttgc-tgggtcgtgggctaacgttggcgggtcgcgaac-c 17358212  T
Q  230 ggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggtt 329  Q
    ||||||| |||||||| |||  || ||||||||||||||||||||||||||| | | ||||||||||||||||| |||||||||||| ||||||||||||    
T  17358211 ggtcggcagagaaaacgaggtgaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaatcgaatcctcttctctggtt 17358112  T
Q  330 ttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17358111 ttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcttccttct 17358052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 57 - 313
Target Start/End: Original strand, 30341510 - 30341771
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaa-tgaaaaaataattttttattt----------gcttcccgcacgcggaggaccaagtctcacacgtttttc 145  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||          | ||||||||||||||| ||||||||||||||||||| |    
T  30341510 aagaaatatattttttggtgctcagaaaaatgaaaaaataattttttattttttgctccgagattcccgcacgcggag-accaagtctcacacgttttcc 30341608  T
Q  146 acacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaa 244  Q
    ||||||||||||||| ||||| |||     |||  ||| ||||| |||  ||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  30341609 acacgcgcaagcttcagctccgcgt-----cgtggtgggttacccttaa-tgggtcgtgggctaagtttggcgggtcgcgaacagggtcggcggagaaaa 30341702  T
Q  245 caaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcga 313  Q
    | |||  || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30341703 cgaggtcaaatcccctctataaatagagagctcgggattgggattcttcactccaaaaccgagaatcga 30341771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 231 - 389
Target Start/End: Complemental strand, 10321815 - 10321657
Alignment:
Q  231 gtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttt 330  Q
    ||||||||||||||| |||  || ||||||||||||||||||||||||||| | | |||||||||||||||||||||||| ||||| ||||||| |||||    
T  10321815 gtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaattgaatcctcttctcaggttt 10321716  T
Q  331 tctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10321715 tctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 10321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 4117312 - 4117465
Alignment:
Q  229 gggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggt 328  Q
    ||||||||||||||||| |||   |  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  4117312 gggtcggcggagaaaacgaggtcgaaacctctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggt 4117411  T
Q  329 tttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4117412 tttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcc 4117465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 15762717 - 15762841
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  15762717 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 15762816  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  15762817 gacgaatcgttcttttcctcctcct 15762841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 15767878 - 15768002
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  15767878 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 15767977  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  15767978 gacgaatcgttcttttcctcctcct 15768002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 20090349 - 20090473
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  20090349 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 20090448  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  20090449 gacgaatcgttcttttcctcctcct 20090473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 20095474 - 20095598
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  20095474 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 20095573  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  20095574 gacgaatcgttcttttcctcctcct 20095598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 17369074 - 17368944
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  17369074 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 17368976  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  17368975 tgttgacgaaccgttctttctttcctccttct 17368944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 55129145 - 55129015
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  55129145 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 55129047  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  55129046 tgttgacgaaccgttctttctttcctccttct 55129015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 10321861 - 10321816
Alignment:
Q  287 attcttcactccaaaaccgagaatcgaatcatcttctctggttttc 332  Q
    ||||||||| |||||||||||||||||||| |||||||||||||||    
T  10321861 attcttcaccccaaaaccgagaatcgaatcctcttctctggttttc 10321816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 49 - 104
Target Start/End: Original strand, 4117226 - 4117280
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaataattttttat 104  Q
    ||||||| |||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  4117226 gggccttaaagaaacatattttttggcgctcagaaaatg-aaaaataattttttat 4117280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 49 - 389
Target Start/End: Complemental strand, 36254386 - 36254050
Alignment:
Q  49 gggcctttaagaaatatatttttt-ggtgctcagaaaatgaaaaaataattttttattt---gcttcccgcacgcggaggaccaagtctcacacgttttt 144  Q
    ||||||| |||||||||||||||| |||||||||||||||||||| ||||||  |  |    | |||||||||||||| |||||||||||||||||||||    
T  36254386 gggccttaaagaaatatatttttttggtgctcagaaaatgaaaaa-taatttgctgctctgagattcccgcacgcggaagaccaagtctcacacgttttt 36254288  T
Q  145 cacacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaa 244  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||| | ||||||| ||||||||    
T  36254287 cacacgcgcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtggg-------ctgagtttggcgggtcgcgagccgggtcggtggagaaaa 36254195  T
Q  245 caaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcat 344  Q
      |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||    
T  36254194 tgaggaaaattcccctctataaatagagagcttgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctagttttctccctttctcat 36254095  T
Q  345 ctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  36254094 ctccctcagtttgtgttgacgaaccgttcttttcttcctccttct 36254050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 24776363 - 24776690
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcacacgtttttca 146  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||          ||||||| |||||||||||||||||||              
T  24776363 aagaaatatattttttggcgctcagaaaatgaaaaaataattttttatttgctgctttgagattcccgcatgcggaggaccaagtctcac---------- 24776452  T
Q  147 cacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaaca 246  Q
         |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| |||||| ||||||||||     
T  24776453 -----gcaagcttccgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcacgaaccgggtcgacggagaaaacg 24776547  T
Q  247 aggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatct 346  Q
    | |   | ||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  24776548 aagtcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccgagaatcgaatactcttctctggttttctccccttctcatct 24776647  T
Q  347 ccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  24776648 ccctcggtttgtgttgacgaaccgttcttttcctcctccttct 24776690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 1413629 - 1413933
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaa-tgaaaaaataattttttatttgcttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaa 155  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||                ||||||||||||||||||||||| ||||||||||     
T  1413629 aagaaatatattttttggtgctcagaaaaatgaaaaaataattttttat----------------gaggaccaagtctcacacgttttccacacgcgca- 1413711  T
Q  156 gcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaat 254  Q
                |||||||||||| ||| |||||||||  ||||||||||||| ||||||||||||||||||| ||||||||| || |||| |||  ||     
T  1413712 ------------cgtttccgcgtcgtgggttaccgttat-tgggtcgtgggctaagtttggcgggtcgcgaaccgggtcggcgaagtaaacgaggtcaaa 1413798  T
Q  255 tcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggt 354  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  1413799 tcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttatctggttttctccccttctcatctccctcggt 1413898  T
Q  355 ttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||||||    
T  1413899 ttgtgttgacgaaccgttcttttcttcctccttct 1413933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 24770908 - 24771235
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaatgaaaaaataattttttatttgct----------tcccgcacgcggaggaccaagtctcacacgtttttca 146  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||          ||||||| |||||||||||||||||||              
T  24770908 aagaaatatattttttggcgctcagaaaatgaaaaaataattttttatttgctgctccgagattcccgcatgcggaggaccaagtctcac---------- 24770997  T
Q  147 cacgcgcaagcttccgctccacgtttccgcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaaca 246  Q
         |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||| |||||| | ||||||||     
T  24770998 -----gcaagctttcgctccacgtttccgcgtcgtggttaccgttacgtgggtcgtgggctgggtttggcgggtcacaaaccgggtcgacagagaaaacg 24771092  T
Q  247 aggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatct 346  Q
    | |   | ||||||||||||||||||||||| ||| ||| |||||| ||||||||||| |||||| ||   |||||||||||||||||||||||||||||    
T  24771093 aagtcgaatcccctctataaatagagagctcaggattggtattctttactccaaaaccaagaatcaaacactcttctctggttttctccccttctcatct 24771192  T
Q  347 ccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  24771193 ccctcggtttgtgttgacgaaccgttcttttcctcctccttct 24771235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 57 - 389
Target Start/End: Complemental strand, 26709637 - 26709317
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaa-tgaaaaaataatttt--ttatttgct-------tcccgcacgcggaggaccaagtctcacacgtttttca 146  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||  || ||||||       |||||||| ||||| ||||||||||||||||||| ||    
T  26709637 aagaaatatattttttggtgctcagaaaaatgaaaaaataatattatttttttgctccgagattcccgcacacggag-accaagtctcacacgttttcca 26709539  T
Q  147 cacgcgcaagcttccgctccacgtttccgcgtcat-ggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaac 245  Q
    |||||||||||||| |||||||||||| ||||| | ||||||||||             ||||         |||||||||| |||||||||||||||||    
T  26709538 cacgcgcaagcttcagctccacgtttctgcgtcgtgggttaccgtt-------------gctg---------ggtcgcgaaccgggtcggcggagaaaac 26709461  T
Q  246 aaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatc 345  Q
     |||  || ||||||||||||||||||||||||||| | | ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||    
T  26709460 gaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctccccttctcatc 26709361  T
Q  346 tccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  26709360 tccctcggtttgtgttgatgaaccattcttttcttcctccttct 26709317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 57 - 389
Target Start/End: Complemental strand, 26979371 - 26979051
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaa-tgaaaaaataatttt--ttatttgct-------tcccgcacgcggaggaccaagtctcacacgtttttca 146  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||  || ||||||       |||||||| ||||| ||||||||||||||||||| ||    
T  26979371 aagaaatatattttttggtgctcagaaaaatgaaaaaataatattatttttttgctccgagattcccgcacacggag-accaagtctcacacgttttcca 26979273  T
Q  147 cacgcgcaagcttccgctccacgtttccgcgtcat-ggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaac 245  Q
    |||||||||||||| |||||||||||| ||||| | ||||||||||             ||||         |||||||||| |||||||||||||||||    
T  26979272 cacgcgcaagcttcagctccacgtttctgcgtcgtgggttaccgtt-------------gctg---------ggtcgcgaaccgggtcggcggagaaaac 26979195  T
Q  246 aaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatc 345  Q
     |||  || ||||||||||||||||||||||||||| | | ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||    
T  26979194 gaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaactgagaattgaatcctcttctttggttttctccccttctcatc 26979095  T
Q  346 tccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  26979094 tccctcggtttgtgttgatgaaccattcttttcttcctccttct 26979051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 17505308 - 17505178
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  17505308 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 17505210  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  17505209 tgttgacgaaccgttctttctttcctccttct 17505178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 17510413 - 17510283
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  17510413 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 17510315  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  17510314 tgttgacgaaccgttctttctttcctccttct 17510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 42019928 - 42019798
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  42019928 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 42019830  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||| ||||||  |||||||||||    
T  42019829 tgttgacgaaccattctttctttcctccttct 42019798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 41858941 - 41858818
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||   |||||| ||| || |||||||||||    
T  41858941 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttct---cttctc-tcttccgcggtttgtgtt 41858846  T
Q  362 gacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||  |||||| ||||    
T  41858845 gacgaaccgttctttctttcctcattct 41858818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 42024708 - 42024578
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||  |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  42024708 tataaattgagagctcgggaatagtattcttcactccaaaattgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 42024610  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||| ||||||||  |||||||||||    
T  42024609 tgttgacgaatcgttctttctttcctccttct 42024578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 43580015 - 43579885
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||| ||||| ||||||| |||||||||||  ||||||||| ||||||| || |||| |||||||    |||||||    
T  43580015 tataaattgagagctcgggaatagtatttttcacaccaaaactgagaatcgaatactcttctctgattttctctcc-tctcttctccctcccgcggtttg 43579917  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  43579916 tgttgacgaaccgttctttctttcctccttct 43579885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 1413444 - 1413512
Alignment:
Q  166 cacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcg 234  Q
    |||||||||||||| ||| |||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  1413444 cacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctaagtttggcgggtcgcgaaccgggtcg 1413512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Original strand, 1413507 - 1413556
Alignment:
Q  196 gggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaac 245  Q
    |||||||||||| ||||||||||||||||||| |||||||||||| ||||    
T  1413507 gggtcgtgggctaagtttggcgggtcgcgaaccgggtcggcggagtaaac 1413556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 1413363 - 1413411
Alignment:
Q  57 aagaaatatattttttggtgctcag-aaaatgaaaaaataattttttat 104  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||    
T  1413363 aagaaatacattttttggtgctcagaaaaatgaaaaaataattttttat 1413411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 62 - 387
Target Start/End: Original strand, 8755 - 9087
Alignment:
Q  62 atatattttttggtgctcagaaaa-tgaaaaaataattttttatttgcttcc--cg-----cacgcggaggaccaagtctcacacgtttttcacacgcgc 153  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||  || |  ||     | ||||||| |||||||||||||| |||| |||||||||    
T  8755 atatattttttagtgctcagaaaaatgaaaaaataattttttatttttttgctccgagattcccgcggag-accaagtctcacacattttccacacgcgc 8853  T
Q  154 aagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaa 252  Q
    ||||||| |||||||||||||||||| ||| |||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||| |||  |    
T  8854 aagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgagtcgtgggctaagtttggcgggtcgcgaaccgggtcggcggagaaaacgaggtca 8952  T
Q  253 attcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcg 352  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  8953 aatcccctctataaatagagagctcgggaatgggattcttcactccaaaaacgagaatcgaatcctcttctctagttttctccccttctcatctccctcg 9052  T
Q  353 gtttgtgttgacgaaccgttcttttcttcctcctt 387  Q
    |||||||||||||||| ||||||||||||||||||    
T  9053 gtttgtgttgacgaactgttcttttcttcctcctt 9087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 67 - 389
Target Start/End: Complemental strand, 3585148 - 3584815
Alignment:
Q  67 ttttttggtgctcagaaaa-tgaaaaaataattttttattt----------gcttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaa 155  Q
    ||||||||||||||||||| ||||||||| |||||||||||          | ||||||||||| ||| ||||||||||||||||||| |||||||||||    
T  3585148 ttttttggtgctcagaaaaatgaaaaaattattttttattttttgctctgagattcccgcacgcagag-accaagtctcacacgttttccacacgcgcaa 3585050  T
Q  156 gcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaat 254  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |  |||||||||||||||| |||| ||| |||||||| |||  ||     
T  3585049 gcttcagctccacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcgcgaaccgggtaggcagagaaaacgaggtcaaa 3584950  T
Q  255 tcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggt 354  Q
    ||||||||||||||||||||||| ||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3584949 tcccctctataaatagagagctcaggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttctcatctccctcggt 3584850  T
Q  355 ttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||||||||||||||||||    
T  3584849 ttgtgttgacgaaccgttcttttcttcctccttct 3584815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 57 - 389
Target Start/End: Complemental strand, 5730664 - 5730319
Alignment:
Q  57 aagaaatatatt--ttttggtgctc-agaaaatgaaaaaataattttttattt----------gcttcccgcacgcggaggaccaagtctcacacgtttt 143  Q
    ||||||||||||  ||||||||||| | |||||||||||||||||||||||||          | ||||||||| | || ||||||||||||||||||||    
T  5730664 aagaaatatattttttttggtgctcaaaaaaatgaaaaaataattttttattttttgctccgagattcccgcacacaga-gaccaagtctcacacgtttt 5730566  T
Q  144 tcacacgcgcaagcttccgctccacgtttccgcgtcat-ggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaa 242  Q
     |||||| ||||||||| ||| |||||||||||||| | |||||||||||||||||||||||||| |  |||||||||| ||||| ||||||||||||||    
T  5730565 ccacacgtgcaagcttcagctacacgtttccgcgtcgtgggttaccgttacgtgggtcgtgggctaacgttggcgggtcacgaaccgggtcggcggagaa 5730466  T
Q  243 aacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctc 342  Q
    ||  |||  || ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5730465 aatgaggtcaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttctc 5730366  T
Q  343 atctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  5730365 atctccctcggtttgtgttgacgaaccgttcttttattcctccttct 5730319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 217 - 389
Target Start/End: Original strand, 48246392 - 48246564
Alignment:
Q  217 gggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatc 316  Q
    ||||||||||| ||||||| ||||||||| |||  || ||| ||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||    
T  48246392 gggtcgcgaaccgggtcggtggagaaaaccaggtcaaatcctctctataaatagagacctcggaaatgggattcttcactacaaaaccgagaatcgaatc 48246491  T
Q  317 atcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48246492 ctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 48246564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 34317972 - 34318096
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||| ||||||||||||||| || ||||||||    
T  34317972 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctgcccttctcatctcccgcgatttgtgtt 34318071  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  34318072 gacgaatcgttcttttcctcctcct 34318096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 36684402 - 36684526
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | |||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  36684402 tataaattgagagctcgggaatagtattcttgactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 36684501  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  36684502 gacgaatcgttcttttcctcctcct 36684526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 27711678 - 27711548
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  27711678 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 27711580  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  27711579 tgttgacgaaccgttctttctttcctccttct 27711548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 37404158 - 37404286
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct--cggtttgtg 359  Q
    ||||||| |||||| ||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||  |||||||||    
T  37404158 tataaattgagagcccgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccggtttgtg 37404256  T
Q  360 ttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||| |||  |||||||||||    
T  37404257 ttgacgaaccgttatttctttcctccttct 37404286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 37409277 - 37409407
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  37409277 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 37409375  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||| |||  |||||||||||    
T  37409376 tgttgacgaaccgttttttctttcctccttct 37409407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 27716798 - 27716668
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| || ||||||||  |||| |||||||||||| || |||| |||||||    |||||||    
T  27716798 tataaattgagagctcgggaatagtattcttcactccaaaactgataatcgaatactcttatctggttttctctcc-tctcttctccctcccgcggtttg 27716700  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  27716699 tgttgacgaaccgttctttctttcctccttct 27716668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 389
Target Start/End: Original strand, 11250863 - 11250993
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| ||||||||| |||| | |||||| |||||||||  |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  11250863 tataaattgagagctcgtgaatagtattctttactccaaaattgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 11250961  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  11250962 tgttgacgaaccgttctttctttcctccttct 11250993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 48246238 - 48246282
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaaa 93  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  48246238 gggccttaaagaaatatattttttggtgctcagaaaaagaaaaaa 48246282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 57 - 389
Target Start/End: Original strand, 4163129 - 4163458
Alignment:
Q  57 aagaaatatattttttggtgctcagaaaatgaaaaaataattttttattt----------gcttcccgcacgcggaggaccaagtctcacacgtttttca 146  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||          | ||||||||||||||| ||||||||||||||||||| ||    
T  4163129 aagaaatatattttttggtgctcagaaaaatgaaaaattattttttattttttgctccgagattcccgcacgcggag-accaagtctcacacgttttcca 4163227  T
Q  147 cacgcgcaagcttccgctccacgtttccgcgtcatgg-ttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaac 245  Q
    |||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||||||| |  |||||||||            |||||||||||||    
T  4163228 cacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tgggtcgtgggctaacgttggcgggt------------cggcggagaaaac 4163314  T
Q  246 aaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatc 345  Q
    ||||  || ||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4163315 aaggttaaatcccctctataaatagagagctcgggatttgcattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttctcatc 4163414  T
Q  346 tccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  4163415 tccctcggtttgtgttgacgaaccgttcttttcttcctccttct 4163458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 109 - 389
Target Start/End: Original strand, 28751352 - 28751610
Alignment:
Q  109 ttcccgcacgcggaggaccaagtctcacacgtttttcacacgcgcaagcttccgctccacgtttccgcgtcat-ggttaccgttacgtgggtcgtgggct 207  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | |||||||||||| ||||             
T  28751352 ttcccgcacgcggag-accaagtctcacacgttttccacacgcgcaagcttcagctccacgtttccgcgtcgtgggttaccgttac-tggg--------- 28751440  T
Q  208 gagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgag 307  Q
                ||||||||  |||||||||||||||| |||  || |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28751441 ------------tcgcgaaccaggtcggcggagaaaacgaggtcaaatcccctctataaatagagagctcgggaatgagattcttcactccaaaaccgag 28751528  T
Q  308 aatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751529 aatcgaatcctcttctttggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 28751610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 42728307 - 42728431
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  42728307 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 42728406  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  42728407 gacgaatcgttcttttcctcctcct 42728431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 42723138 - 42723262
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  42723138 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 42723237  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||  |||||||||| |||||||    
T  42723238 gacgagtcgttcttttcctcctcct 42723262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 44096710 - 44096586
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | |||||| |||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  44096710 tataaattgagagctcgggaatagtattctttactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 44096611  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  44096610 gacgaatcgttcttttcctcctcct 44096586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 40392674 - 40392544
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  | ||||||| ||||||| || |||| |||||||    |||||||    
T  40392674 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatacttttctctgattttctctcc-tctcttctccctcccgcggtttg 40392576  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    |||||||||||||||||||  |||||||||||    
T  40392575 tgttgacgaaccgttctttctttcctccttct 40392544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 263 - 389
Target Start/End: Original strand, 40518213 - 40518341
Alignment:
Q  263 ataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttgt 358  Q
    |||||| ||||||||| |||| | ||||||||||||||||| |||||||||||  |||||||| |||||||| || |||| |||||||    ||||||||    
T  40518213 ataaattgagagctcgtgaatagtattcttcactccaaaactgagaatcgaatactcttctcttgttttctctcc-tctcttctccctccagcggtttgt 40518311  T
Q  359 gttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||| |||||||||||||||    
T  40518312 gttgacgaaccgttc-tttcttcctccttct 40518341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 44754293 - 44754407
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||          |||||||||||||||| || ||||||||    
T  44754293 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttct----------ccccttctcatctcccgcgatttgtgtt 44754382  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  44754383 gacgaatcgttcttttcctcctcct 44754407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 44759459 - 44759573
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||          |||||||||||||||| || ||||||||    
T  44759459 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttct----------ccccttctcatctcccgcgatttgtgtt 44759548  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  44759549 gacgaatcgttcttttcctcctcct 44759573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 40519987 - 40519925
Alignment:
Q  263 ataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctct 325  Q
    |||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||    
T  40519987 ataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctct 40519925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 21642934 - 21643147
Alignment:
Q  175 gcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagag 274  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||     
T  21642934 gcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagac 21643032  T
Q  275 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 374  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21643033 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 21643132  T
Q  375 tttcttcctccttct 389  Q
    |||||||||||||||    
T  21643133 tttcttcctccttct 21643147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 21642559 - 21642772
Alignment:
Q  175 gcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagag 274  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||     
T  21642559 gcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagac 21642657  T
Q  275 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 374  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21642658 ctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 21642757  T
Q  375 tttcttcctccttct 389  Q
    |||||||||||||||    
T  21642758 tttcttcctccttct 21642772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 21643309 - 21643522
Alignment:
Q  175 gcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagag 274  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||     
T  21643309 gcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagac 21643407  T
Q  275 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 374  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21643408 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctttggttttctccccttctcatctccctcgatttgtgttgacgaaccgttct 21643507  T
Q  375 tttcttcctccttct 389  Q
    |||||||||||||||    
T  21643508 tttcttcctccttct 21643522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 21641434 - 21641647
Alignment:
Q  175 gcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagag 274  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||     
T  21641434 gcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagac 21641532  T
Q  275 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 374  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21641533 ctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctccccttctcatctccctcggtttatgttgacgaaccgttct 21641632  T
Q  375 tttcttcctccttct 389  Q
    |||||||||||||||    
T  21641633 tttcttcctccttct 21641647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 21641809 - 21642022
Alignment:
Q  175 gcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagag 274  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||     
T  21641809 gcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagac 21641907  T
Q  275 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 374  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21641908 ctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctccccttctcatctccctcggtttatgttgacgaaccgttct 21642007  T
Q  375 tttcttcctccttct 389  Q
    |||||||||||||||    
T  21642008 tttcttcctccttct 21642022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 21642184 - 21642397
Alignment:
Q  175 gcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagag 274  Q
    ||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||     
T  21642184 gcgtcgtggttaccgttac-tgggtcgtgggctaagtttcgcgggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagac 21642282  T
Q  275 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 374  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21642283 ctcgggaatgggattcttcactccaaaatcgagaatcgaatcctcttctttggttttctccccttctcatctccctcggtttatgttgacgaaccgttct 21642382  T
Q  375 tttcttcctccttct 389  Q
    |||||||||||||||    
T  21642383 tttcttcctccttct 21642397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 198 - 389
Target Start/End: Complemental strand, 24885118 - 24884927
Alignment:
Q  198 gtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactc 297  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||||| |||  || ||| ||||||||||||||||||||||||||| |||||||||||    
T  24885118 gtcgtgggctaagtttggtgggtcgcgaaccgggtcggcggagaaaacgaggtcaaatcctctctataaatagagagctcgggaatggaattcttcactc 24885019  T
Q  298 caaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24885018 caaaaccgagaatcgaatcctcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 24884927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 175 - 389
Target Start/End: Original strand, 21643749 - 21643962
Alignment:
Q  175 gcgtcatggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggagaaaacaaggaaaattcccctctataaatagagag 274  Q
    ||||| ||||||| ||||| | ||||||||||| ||||| || |||||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||     
T  21643749 gcgtcgtggttacagttac-taggtcgtgggctaagtttcgcaggtcgcgaaccgggtcggcggagaaaacgaggtaaattcctctctataaatagagac 21643847  T
Q  275 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgttgacgaaccgttct 374  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  21643848 ctcgggaatgggattcttcactccaaaaccgagaatcgaatcctcttctctggttttctccccttcccatctccctcggtttgtgttgatgaaccgttct 21643947  T
Q  375 tttcttcctccttct 389  Q
    ||| |||||||||||    
T  21643948 ttttttcctccttct 21643962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 227 - 389
Target Start/End: Original strand, 43998949 - 43999111
Alignment:
Q  227 ctgggtcggcggagaaaacaaggaaaattcccctctataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctg 326  Q
    ||||| ||||||||||||| |||  || ||||||||||||||||||||||||||| |   |||||| |||| ||||| |||||||||||| |||||||||    
T  43998949 ctggggcggcggagaaaacgaggtgaaatcccctctataaatagagagctcgggatttacattctttactctaaaactgagaatcgaatcctcttctctg 43999048  T
Q  327 gttttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43999049 attttctccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 43999111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 44 - 277
Target Start/End: Original strand, 17955382 - 17955602
Alignment:
Q  44 ggctggggcctttaagaaatatattttttggtgctcagaaaa-tgaaaaaataattttttatttgcttcccgcacgcggaggaccaagtctcacacgttt 142  Q
    |||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||             ||||||| ||||||||||||||||||    
T  17955382 ggcttgggctttaaagaaatatattttttggtgctcagaaaaatgaaaaaataatttttta-------------cgcggag-accaagtctcacacgttt 17955467  T
Q  143 ttcacacgcgcaagcttccgctccacgtttccgcgtcat-ggttaccgttacgtgggtcgtgggctgagtttggcgggtcgcgaactgggtcggcggaga 241  Q
    | |||||||||||||||| ||||||| |||||||||| | |||||||||||| |||||| |||||| |  || ||| ||||||||| |||||||||||||    
T  17955468 tccacacgcgcaagcttcagctccacatttccgcgtcgtgggttaccgttac-tgggtcatgggctaacgttcgcgagtcgcgaaccgggtcggcggaga 17955566  T
Q  242 aaacaaggaaaattcccctctataaatagagagctc 277  Q
    |||| |||  || |||||||||||||||||||||||    
T  17955567 aaacgaggtcaaatcccctctataaatagagagctc 17955602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 32010934 - 32010810
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  32010934 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 32010835  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  32010834 gacgaatcgttcttttcctcctcct 32010810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 32016108 - 32015984
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  32016108 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 32016009  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  32016008 gacgaatcgttcttttcctcctcct 32015984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 42514180 - 42514245
Alignment:
Q  268 tagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttct 333  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42514180 tagagagctcgggaatgagattcttcactccaaaaccgagaatcgaatcctcttctctggttttct 42514245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 17955614 - 17955670
Alignment:
Q  333 tccccttctcatctccctcggtttgtgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17955614 tccccttctcatctccctcggtttgtgttgacgaatcgttcttttcttcctccttct 17955670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 2165553 - 2165625
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctc 334  Q
    ||||||| |||||||||||||| | ||||||||||||||||  ||||||| |||  |||||||| ||||||||    
T  2165553 tataaattgagagctcgggaatagtattcttcactccaaaattgagaatcaaatgctcttctctagttttctc 2165625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 42514139 - 42514179
Alignment:
Q  112 ccgcacgcggaggaccaagtctcacacgtttttcacacgcg 152  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  42514139 ccgcacgcggaggaccaagtctcacacatttttcacacgcg 42514179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 24885185 - 24885142
Alignment:
Q  49 gggcctttaagaaatatattttttggtgctcagaaaatgaaaaa 92  Q
    |||||||  |||||||||||||||||||||||||||| ||||||    
T  24885185 gggccttatagaaatatattttttggtgctcagaaaaagaaaaa 24885142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 3432 - 3308
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  3432 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 3333  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  3332 gacgaatcgttcttttcctcctcct 3308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 262 - 386
Target Start/End: Original strand, 81103 - 81227
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||| || ||||||||    
T  81103 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctccccttctcatctcccgcgatttgtgtt 81202  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  81203 gacgaatcgttcttttcctcctcct 81227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 26781 - 26657
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||| ||||||| |||||||||||  |||| ||||||||||||||||||||||||||| || ||||||||    
T  26781 tataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggttttctccccttctcatctcccgcgatttgtgtt 26682  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  26681 gacgaatcgttcttttcctcctcct 26657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 262 - 386
Target Start/End: Complemental strand, 31953 - 31829
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccctcggtttgtgtt 361  Q
    ||||||| |||||||||||||| | ||||||||| ||||||| |||||||||||  |||| ||||||||||||||||||||||||||| || ||||||||    
T  31953 tataaattgagagctcgggaatagtattcttcacaccaaaactgagaatcgaatactcttatctggttttctccccttctcatctcccgcgatttgtgtt 31854  T
Q  362 gacgaaccgttcttttcttcctcct 386  Q
    |||||| |||||||||| |||||||    
T  31853 gacgaatcgttcttttcctcctcct 31829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 262 - 389
Target Start/End: Complemental strand, 3918 - 3788
Alignment:
Q  262 tataaatagagagctcgggaatgggattcttcactccaaaaccgagaatcgaatcatcttctctggttttctccccttctcatctccct----cggtttg 357  Q
    ||||||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||||||||||||| || |||| |||||||    |||||||    
T  3918 tataaattgagagctcgggaatagtattcttcactccaaaactgagaatcgaatactcttctctggttttctctcc-tctcttctccctcccgcggtttg 3820  T
Q  358 tgttgacgaaccgttcttttcttcctccttct 389  Q
    ||||||||||||||| |||  |||||||||||    
T  3819 tgttgacgaaccgttttttctttcctccttct 3788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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