View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_21 (Length: 382)
Name: NF12194_low_21
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 6 - 365
Target Start/End: Original strand, 26752296 - 26752655
Alignment:
| Q |
6 |
acttctggtaccactaccagctgcaccattgcttgtagtccaaggatctggccaataaatgctagatactctcggtccttgatataaaagacgaagaatg |
105 |
Q |
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| T |
26752296 |
acttcttgtaccactaccagctgcaccattgcttgtagtccaaggatctggccaataaatgctagatactctcggtccttgatataaaagacgaagaatg |
26752395 |
T |
|
| Q |
106 |
ttatcattgtcaaaaaatagtttgtagaagccagacgaatagttcgtctgacttcttgatgaaacgaggttcgtgaacctcgttaaggtttggtcgggta |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
26752396 |
ttatcattgtcaaaaaatagtttgtagaagccagacgaatagttcgtctgacttcttgatgaaacgaggttcgtgaacctcgttagggtttggtcaggta |
26752495 |
T |
|
| Q |
206 |
aaagtgtatctgttgggaagtcaaaactttgccatagaatattgttttttcttgaaccatttctgctttgttcttgaagaacaaggttacctgtttcctg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26752496 |
aaagtgtatctgttgggaagtcaaaactttgccatagaatattgttttttcttgaaccatttctgctttgttcttgaagaacaaggttacctgtttcatg |
26752595 |
T |
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| Q |
306 |
taatagtagttcaagtggttttgttgaggtggtttcagtggaccaaacaatggactgagc |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26752596 |
taatagtagttcaagtggttttgttgaggtggtttcagtggaccaaacaatggactgagc |
26752655 |
T |
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