View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12194_low_24 (Length: 343)
Name: NF12194_low_24
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 7 - 333
Target Start/End: Complemental strand, 34658514 - 34658188
Alignment:
| Q |
7 |
ccaacatgtcagttttcagtgttgtaaccatgatggcaggagtaattctttatgaacgcgtattcgtcccaatcgtccgtaaattcacaaataatccggt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34658514 |
ccaacatgtcagttttcagtgttgtaaccatgatggcaggagtaattctttatgaacgcgtattcatcccaatcgtccgtaaattcacaaataatccggt |
34658415 |
T |
|
| Q |
107 |
tggaatcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgct |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658414 |
tggaatcacgtgcatacaaagaatgggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgct |
34658315 |
T |
|
| Q |
207 |
gctaagtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtacctcaatattgttttcatggacttgctgatgttttta |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34658314 |
gctaagtataacttattggatgatccaaaagcaattattccaataagtgtattttggttggtacctcaatattgttttcatggacttgctgatgttttta |
34658215 |
T |
|
| Q |
307 |
tgtctgttggactttttgaatttctct |
333 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
34658214 |
tgtctgttggactttttgaatttctct |
34658188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 31 - 333
Target Start/End: Complemental strand, 34645463 - 34645161
Alignment:
| Q |
31 |
taaccatgatggcaggagtaattctttatgaacgcgtattcgtcccaatcgtccgtaaattcacaaataatccggttggaatcacgtgcatacaaagaat |
130 |
Q |
| |
|
||||||||||| |||||| || || ||||||||| | ||||| ||| ||| ||||| ||||||||| ||||| | ||||||||| || |||||||||| |
|
|
| T |
34645463 |
taaccatgatgataggagttatgctatatgaacgctttttcgttccattcgcccgtagattcacaaagaatcctgctggaatcacatgtttacaaagaat |
34645364 |
T |
|
| Q |
131 |
gggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgctgctaagtataacttattggatgat |
230 |
Q |
| |
|
|||| | || ||| | | ||||||||||| || || | ||||||| ||| |||| ||||||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
34645363 |
gggagtagggtttgtggttaacattatagctactatagtttcagcactagtggaaacgaaaagaaaaacagttgctgcaaagtttaacttattggatgat |
34645264 |
T |
|
| Q |
231 |
ccaaaagcaattattccaataagtgtattttggttggtacctcaatattgttttcatggacttgctgatgtttttatgtctgttggactttttgaatttc |
330 |
Q |
| |
|
||||||||||| || || | |||||||||||||| ||||||||||||||| |||||||| | ||||| ||||| ||||||||||||| ||| ||||||| |
|
|
| T |
34645263 |
ccaaaagcaataatcccttttagtgtattttggttagtacctcaatattgtcttcatggagtggctgaagttttcatgtctgttggacatttggaatttc |
34645164 |
T |
|
| Q |
331 |
tct |
333 |
Q |
| |
|
||| |
|
|
| T |
34645163 |
tct |
34645161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 31 - 333
Target Start/End: Complemental strand, 34665163 - 34664861
Alignment:
| Q |
31 |
taaccatgatggcaggagtaattctttatgaacgcgtattcgtcccaatcgtccgtaaattcacaaataatccggttggaatcacgtgcatacaaagaat |
130 |
Q |
| |
|
||||||||||| |||| || ||||| || |||||| ||||||| ||| || |||||| ||||||||| ||||| | ||||||||| || | |||||||| |
|
|
| T |
34665163 |
taaccatgatgacaggtgttattctatacgaacgcttattcgttccattcatccgtagattcacaaagaatcctgctggaatcacatgtttgcaaagaat |
34665064 |
T |
|
| Q |
131 |
gggaattggatttataatcaacattatagccacattaatctcagcaccagttgaaatcaaaagaaaagaagttgctgctaagtataacttattggatgat |
230 |
Q |
| |
|
|||||| || ||| | || |||||||||||||| || | |||||| || ||||||||||||||| |||||||| | || || ||||||| ||| | |
|
|
| T |
34665063 |
gggaataggctttgtgattaacattatagccactatagtttcagcattggtggaaatcaaaagaaaaaaagttgcttccaaataccacttattagatagt |
34664964 |
T |
|
| Q |
231 |
ccaaaagcaattattccaataagtgtattttggttggtacctcaatattgttttcatggacttgctgatgtttttatgtctgttggactttttgaatttc |
330 |
Q |
| |
|
|||||||||||||| || |||||||| ||||||||||||||||| |||| ||| |||||| | ||||| ||||| ||| |||||||| ||| ||||||| |
|
|
| T |
34664963 |
ccaaaagcaattatccctataagtgtgttttggttggtacctcagtattttttgcatggagtggctgaagttttcatgaatgttggacatttagaatttc |
34664864 |
T |
|
| Q |
331 |
tct |
333 |
Q |
| |
|
||| |
|
|
| T |
34664863 |
tct |
34664861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University