View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_25 (Length: 337)
Name: NF12194_low_25
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_25 |
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| [»] scaffold0018 (4 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 75840 - 75651
Alignment:
| Q |
16 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctg |
115 |
Q |
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| T |
75840 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaacatgtgggagttgtggtcacaatgccagaggttgcaaaagtcagacagtgaaccctg |
75741 |
T |
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| Q |
116 |
aagcacaaaaaagaaaggtattttactgctgtcaaaatattgatcatatttcttgtcagtttatttgtaactatattactttaaaatttg |
205 |
Q |
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| T |
75740 |
aagcacaaaagagaaaggtattttacttctgtcaaaatattgatcatatttcttgtcagtttatctctaactatattgatttataatttg |
75651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 75603 - 75516
Alignment:
| Q |
250 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacccaaagtgctcaagcaagtgaaattgaggagaccaatccagttcaaac |
337 |
Q |
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| T |
75603 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacacaaagtgctcaagcaagtcaaagtggggagaccaatccagttcaaac |
75516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 76118 - 76028
Alignment:
| Q |
16 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacag |
106 |
Q |
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| T |
76118 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaacatgtgggagctgtggtcacaatggcagaggttgcaaaagtcagacag |
76028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 76396 - 76306
Alignment:
| Q |
16 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacag |
106 |
Q |
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| T |
76396 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaacatgtgggagctgtggtcacaatggcagaggttgcaaaagtcagacag |
76306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 21974816 - 21974626
Alignment:
| Q |
16 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctg |
115 |
Q |
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| T |
21974816 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaagatgtgggagttgtggtcacaatgctagaggttgcaaaagtcagacaatgaacccag |
21974717 |
T |
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| Q |
116 |
aagcacaaaaaagaaaggtattttactgctgtcaaaatattgatc-atatttcttgtcagtttatttgtaactatattactttaaaatttg |
205 |
Q |
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| T |
21974716 |
aagcacaaaaaagaaaggtattttacttctgtcaaaatattgatcaatatttcttgtcagtttatctctaactatattgatttataatttg |
21974626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 337
Target Start/End: Complemental strand, 21974578 - 21974491
Alignment:
| Q |
250 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacccaaagtgctcaagcaagtgaaattgaggagaccaatccagttcaaac |
337 |
Q |
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| T |
21974578 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacacaaagtgctcaagcaagtcaaagtggggagaccaatccagttcaaac |
21974491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 44479362 - 44479552
Alignment:
| Q |
16 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaaaatgtggaagttgtggtcacaatgcaagaggttgtaaatgtcagacagtgaaccctg |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||| |||||||| ||||||| | |
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| T |
44479362 |
tgtgggaaatttagcagaggtgctagtaagtacaagtgcacaagatgtgggagttgtggtcacaatgctagaggttgcaaaagtcagacaatgaacccag |
44479461 |
T |
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| Q |
116 |
aagcacaaaaaagaaaggtattttactgctgtcaaaatattgatc-atatttcttgtcagtttatttgtaactatattactttaaaatttg |
205 |
Q |
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| T |
44479462 |
aagcacaaaaaagaaaggtattttacttctgtcaaaatattgatcaatatttcttgtcagtttatctctaactatattgatttataatttg |
44479552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 250 - 337
Target Start/End: Original strand, 44479600 - 44479687
Alignment:
| Q |
250 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacccaaagtgctcaagcaagtgaaattgaggagaccaatccagttcaaac |
337 |
Q |
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| T |
44479600 |
gtgctcaagtctctcaagaacagtctgctcaacatgaaacacaaagtgctcaagcaagtcaaagtggggagaccaatccagttcaaac |
44479687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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