View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_26 (Length: 320)
Name: NF12194_low_26
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 28932127 - 28931820
Alignment:
| Q |
1 |
catgattcgtaaaataggtcgtcaataaaagttcatgtaagaagacttttctacacattagttgtgctttatgtatacctcaaacttgtttatccaattt |
100 |
Q |
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| T |
28932127 |
catgattcgtaaaataggtcgtcaataaaagttcatgtaagaagacttttctacacattagttgtgctttatgtatacctcaaacttgtttatccaattt |
28932028 |
T |
|
| Q |
101 |
tccaacaagactacagtgcttcagnnnnnnnntacaaataaaatttaattacaaattttgaatgatgataaactttgatttgatttgatgtttattatac |
200 |
Q |
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| T |
28932027 |
tccaacaagactacagtgcttcagaaaaaaaatacaaataaaatttaattacaaattttgaatgatgataaactttgatttgatttgatgtttattatac |
28931928 |
T |
|
| Q |
201 |
cttctttgccgcatcttcagcttctttccacatgccatcaaattgtctgtaaagctgctcagttgtctgctttgttctgcattcgccaatcaaccatctc |
300 |
Q |
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| T |
28931927 |
cttctttgccgcatcttcagcttctttccacatgccatcaaattgtctgtaaagctgctcagttgtctgctttgttctgcattcgccaatcaaccatctc |
28931828 |
T |
|
| Q |
301 |
aggcacag |
308 |
Q |
| |
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|||||||| |
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| T |
28931827 |
aggcacag |
28931820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 10186783 - 10186676
Alignment:
| Q |
195 |
ttataccttctttgccgcatcttcagcttctttccacatgccatcaaattgtctgtaaagctgctcagttgtctgctttgttctgcattcgccaatcaac |
294 |
Q |
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| T |
10186783 |
ttataccttctttgcagcagcttcagcttctttccacacactgtcaaattgtctgtacagctgctcagttgtctgctttgttctgcaatcgccaatcaac |
10186684 |
T |
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| Q |
295 |
catctcag |
302 |
Q |
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| T |
10186683 |
catctcag |
10186676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 35122173 - 35122327
Alignment:
| Q |
147 |
aattacaaattttgaatgatgataaactttgatttgatttgatgtttattataccttctttgccgcatcttcagcttctttccacatgccatcaaattgt |
246 |
Q |
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|||||| |||||||| ||||||||| ||||||||||||| |||| |||||||||||||| ||| |||||||||||||||||| |||||||||||| |
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| T |
35122173 |
aattaccaattttgagtgatgataacctttgatttgatt-----tttactataccttctttgcagcagcttcagcttctttccacacgccatcaaattgc |
35122267 |
T |
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| Q |
247 |
ctgtaaagctgctcagttgtctgctttgttctgcattcgccaatcaaccatctcaggcac |
306 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35122268 |
ttgtacagctgctcagttgtctgctttgttctgcattcgccaatcaaccatctcaggcac |
35122327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 35122082 - 35122146
Alignment:
| Q |
63 |
tgtgctttatgtatacctcaaacttgtttatc---caattttccaacaagactacagtgcttcag |
124 |
Q |
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|||||||| | |||||||||||| |||||||| |||||| ||| ||||||||||||||||||| |
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| T |
35122082 |
tgtgctttgtttatacctcaaacatgtttatctagcaatttcccatcaagactacagtgcttcag |
35122146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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