View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_29 (Length: 309)
Name: NF12194_low_29
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_29 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 13472036 - 13472344
Alignment:
| Q |
1 |
ttcaaaccctatcagtcagttcaaatttttgtggagatcaatgtgccaaaacagactactctccacattaagtagtagacgcgatagtagttataggtcc |
100 |
Q |
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| T |
13472036 |
ttcaaatcctatcagtcagttcaaatttttgtggagatcaatgtgccaaaacagactactctccacattaagtagtagatgcgacaatagttataggtct |
13472135 |
T |
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| Q |
101 |
tattctcattgttggccttcactgcagcgtctattccattttcaaacattttttccttgaaacatgctggcgattggaatatgacctataactaatatgg |
200 |
Q |
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| T |
13472136 |
tattctcattgttggccttcactgcagcgtctattccattttcaaacattttttccttgaaacatgctggtgattggaataggacctataactaatttgg |
13472235 |
T |
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| Q |
201 |
cgtctcctaaatgtggagcatagtttgttttggcgcattgatctccagagaaagaagaatacctcgttgtcttccgtgtcaaaggaaccttgcttctaca |
300 |
Q |
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| T |
13472236 |
cgtcttctaaatgtggagcatagtttgttttggcgcattgatctccagagaaagaagaatgcctcgttgtcttttgtgtcaaaggaaccttgcttctaca |
13472335 |
T |
|
| Q |
301 |
tataggact |
309 |
Q |
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||||||||| |
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| T |
13472336 |
tataggact |
13472344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 13467939 - 13468227
Alignment:
| Q |
1 |
ttcaaaccctatcagtcagttcaaatttttgtggagatcaatgtgccaaaacagactactctccacattaagtagtagacgcgatagtagttataggtcc |
100 |
Q |
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| T |
13467939 |
ttcaaaccatatcagtcagttcatatttatgtggagatcaatgtgccaaaacagactaagcttcatattcggtagtagatgccaca-tagttataggtcc |
13468037 |
T |
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| Q |
101 |
tattctcattgttggccttcactgcagcgtctattccattttcaaacattttttccttgaaacatgctggcgattggaatatgacctataactaatatgg |
200 |
Q |
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| T |
13468038 |
tattctcatagcgggccttcattgccacgtctattccattttcaaacattgtttccttgaaacatggcaatgatcagaataggacatataactaat-tga |
13468136 |
T |
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| Q |
201 |
cgtctcctaaatgtggagcatagtttgttttggcgcattgatctccagagaaagaagaatacctcgttgtcttccgtgtcaaaggaacctt |
291 |
Q |
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| T |
13468137 |
cgtcttctgaatgtggagcatagtctgttttggcacattgatctccagagaaagaagaatgtctcgttgactttggtgtcaaagcaacctt |
13468227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 13468183 - 13468146
Alignment:
| Q |
32 |
tggagatcaatgtgccaaaacagactactctccacatt |
69 |
Q |
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| T |
13468183 |
tggagatcaatgtgccaaaacagactatgctccacatt |
13468146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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