View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_33 (Length: 242)
Name: NF12194_low_33
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 31870434 - 31870221
Alignment:
| Q |
24 |
taagtatactcatgtttgttataaaattgagaaaccattattcctcggtaaaaaggttcctaggaataacgtaatttttcacaactttcaatact----- |
118 |
Q |
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| T |
31870434 |
taagtatactcatgtttgttataaaattgagaaaccagtattcctcggtaaaaaggttcttaggaataacgtaacttttcacaactttcaatactcccat |
31870335 |
T |
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| Q |
119 |
--aacaaacatggcaactaggacggtggaagctccggacgacccttgcatggctgaagcgctgggtgtgaagtttgctctggattggatcgaagtaaatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| |
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| T |
31870334 |
gtaacaaacatggcaactaggacggtggaagctccgaacgacccttgcatggctgaagcgctgggtgtgaagtttgatctggataggatagaagtaaatg |
31870235 |
T |
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| Q |
217 |
gttggcgatctgtg |
230 |
Q |
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|||| ||||||||| |
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| T |
31870234 |
gttgacgatctgtg |
31870221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 30264677 - 30264776
Alignment:
| Q |
127 |
tggcaactaggacggtggaagctccggacgacccttgcatggctgaagcgctgggtgtgaagtttgctctggattggatcgaagtaaatggttggcgatc |
226 |
Q |
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| T |
30264677 |
tggcaactaggacagtagaagcaccagacgatccctgcatggctgaagcgatgggagtaaaggttgcgctggattggatcgaagtaaatggttggagatc |
30264776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 26674352 - 26674290
Alignment:
| Q |
28 |
tatactcatgtttgttataaaattgagaaaccattattcctcggtaaaaaggttcctaggaat |
90 |
Q |
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| T |
26674352 |
tatacccatgtttgttatgagattgagaaaaaaatattcctgggtataaaggttcctaggaat |
26674290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 90
Target Start/End: Complemental strand, 26945958 - 26945896
Alignment:
| Q |
28 |
tatactcatgtttgttataaaattgagaaaccattattcctcggtaaaaaggttcctaggaat |
90 |
Q |
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||||| |||||||||||| | ||||||||| | ||||||| |||| |||||||||||||||| |
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| T |
26945958 |
tatacccatgtttgttatgagattgagaaaaaaatattcctgggtataaaggttcctaggaat |
26945896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 114
Target Start/End: Original strand, 32498172 - 32498257
Alignment:
| Q |
28 |
tatactcatgtttgttataaaattgagaaaccattattcctcggtaaaaaggttcctaggaataacgtaatttttcacaactttcaa |
114 |
Q |
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||||| |||||||||||| | ||| ||||| ||||||||||| |||| ||||||||| |||||| |||||| ||| ||||||||| |
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| T |
32498172 |
tatacacatgtttgttatgagatttagaaatcattattcctc-gtaacaaggttcctgagaataaaataatttctcaaaactttcaa |
32498257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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