View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12194_low_6 (Length: 616)
Name: NF12194_low_6
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12194_low_6 |
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| [»] scaffold0171 (3 HSPs) |
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| [»] scaffold0181 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 22 - 598
Target Start/End: Original strand, 36735127 - 36735703
Alignment:
| Q |
22 |
atagaatagtagaagaatcagacattatcaaccttccttacctacaagcaatagtcaaagaaacactaaggattcacccaacaggtccattaattgttag |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735127 |
atagaatagtagaagaatcagacattatcaaccttccttacctacaagcaatagtcaaagaaacactaaggattcacccaacaggtccattaattgttag |
36735226 |
T |
|
| Q |
122 |
agaatcatctgaaaagtgcacaatccaaggctatgagataccagcaaagacacaattgtttgttaatatatggtctattggaagggaccctaattattgg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735227 |
agaatcatctgaaaagtgcacaatccaaggctatgagataccagcaaagacacaattgtttgttaatatatggtctattggaagggaccctaattattgg |
36735326 |
T |
|
| Q |
222 |
gataatccacttgagtttaggccagaaaggtttattaatgaagttggaaatttagatgtgaggggtcaacattttcatttgattccatttgggagtggaa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735327 |
gataatccacttgagtttaggccagaaaggtttattaatgaagttggaaatttagatgtgaggggtcaacattttcatttgattccatttgggagtggaa |
36735426 |
T |
|
| Q |
322 |
gaagagcatgccctggaacatcattggctttgcatgttgtgcaaacaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgg |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735427 |
gaagagcatgccctggaacatcattggctttgcatgttgtgcaaacaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgg |
36735526 |
T |
|
| Q |
422 |
gattgttaatatggaagagaaacctgggttgaccctttcaagggctcatcctttaatttgtgtccctgtgcctagatttaatccttttccttctatgtga |
521 |
Q |
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| T |
36735527 |
gattgttaatatggaagagaaacctgggttgaccctttcaagggctcatcctttaatttgtgtccctgtgcctagatttaatcattttccttctatgtga |
36735626 |
T |
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| Q |
522 |
ttttgatcatgtttaggggaggnnnnnnnntgcaacttcatattgaaaatttatatttttagtcctcttgttgcttt |
598 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36735627 |
ttttgatcatgtttaggggaggaaaaaaaatgcaacttcatattgaaaatttatatttttagtcctcttgttgcttt |
36735703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 366 - 493
Target Start/End: Original strand, 25169599 - 25169723
Alignment:
| Q |
366 |
acaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaaggg |
465 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||| ||| | |||||||||||||| | |||||||| |||||| |
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| T |
25169599 |
acaaatcttgctgcaatgattcagtgttttgaatggaatgttga---tggtaatgggaaagttgacatggaagagaaaccggccgtgacccttccaaggg |
25169695 |
T |
|
| Q |
466 |
ctcatcctttaatttgtgtccctgtgcc |
493 |
Q |
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|||||||||| |||||||| |||||||| |
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| T |
25169696 |
ctcatcctttgatttgtgttcctgtgcc |
25169723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 366 - 493
Target Start/End: Original strand, 24941163 - 24941287
Alignment:
| Q |
366 |
acaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaaggg |
465 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||| | ||||||||||| ||||| |||||||||||| | | | |||||| |||||| |
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| T |
24941163 |
acaaatcttgctgcaatgattcagtgttttgaatggaatgtt---gatggtaatgggaaagttaacatggaagagaaatccgctgtaacccttccaaggg |
24941259 |
T |
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| Q |
466 |
ctcatcctttaatttgtgtccctgtgcc |
493 |
Q |
| |
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|||||||||| |||||||| |||||||| |
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| T |
24941260 |
ctcatcctttgatttgtgttcctgtgcc |
24941287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 337
Target Start/End: Complemental strand, 38807755 - 38807637
Alignment:
| Q |
219 |
tgggataatccacttgagtttaggccagaaaggttt-attaatgaagttggaaatttagatgtgaggggtcaacattttcatttgattccatttgggagt |
317 |
Q |
| |
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||||| |||||||||||||||||||| || |||||| || | |||||| || |||||||||||||| ||| |||| || || || |||||||| | | |
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| T |
38807755 |
tgggagaatccacttgagtttaggcc-gagaggttttatgagtgaagtgaataagttagatgtgaggggacaaaatttccaatttataccatttggaact |
38807657 |
T |
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| Q |
318 |
ggaagaagagcatgccctgg |
337 |
Q |
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||||||||||| |||||||| |
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| T |
38807656 |
ggaagaagagcttgccctgg |
38807637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 488
Target Start/End: Original strand, 25648 - 25914
Alignment:
| Q |
219 |
tgggataatccacttgagtttaggccagaaaggtttattaatgaagttggaaatttagatgtgaggggtcaacattttcatttgattccatttgggagtg |
318 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||||| | ||||| || || ||| | ||||| ||| |||| || || || |||||||| || |
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| T |
25648 |
tgggaaaatccacttgagtttaaaccagagaggtttatgagtgaagggaataagtttgatctaaggggacaaaatttccaatttataccatttggatttg |
25747 |
T |
|
| Q |
319 |
gaagaagagcatgccctggaacatcattggctttgcatgttgtgcaaacaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaa |
418 |
Q |
| |
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|||||||||| || ||||| || ||||| || | || ||||| | |||||||||||||||||| ||||| |||||||||| ||||||| |||||||| |
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| T |
25748 |
gaagaagagcttgtcctggtacctcattcgcgcttcaagttgttccaacaaatcttgctgctattattcagtgttttgaattgaaggtt---ggtggtaa |
25844 |
T |
|
| Q |
419 |
tgggattgttaatatggaagagaaacctgggttgaccctttcaagggctcatcctttaatttgtgtccct |
488 |
Q |
| |
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||| | |||| |||||||||||| || | ||||||| |||||||||||||||| || ||||||||| |
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| T |
25845 |
tggaacagttagcatggaagagaaagcttcgacgacccttccaagggctcatcctttgatgtgtgtccct |
25914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 365 - 488
Target Start/End: Original strand, 12159 - 12279
Alignment:
| Q |
365 |
aacaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaagg |
464 |
Q |
| |
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||||||||||||||| |||||||| |||||||||||||| ||| |||||| |||| | ||||| ||||||||||||||| |||||| ||||| |
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| T |
12159 |
aacaaatcttgctgcaatgattcagtgttttgaatggaaagtt---ggtggtgatggaacagttaacatggaagagaaaccttcaaccacccttccaagg |
12255 |
T |
|
| Q |
465 |
gctcatcctttaatttgtgtccct |
488 |
Q |
| |
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||||||||||| || ||||||||| |
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| T |
12256 |
gctcatcctttgatatgtgtccct |
12279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 487
Target Start/End: Original strand, 19946 - 20064
Alignment:
| Q |
366 |
acaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaaggg |
465 |
Q |
| |
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||||||||||| || |||||||| |||||||||||||||||| ||||||||||| | ||||| ||||| |||||| | | || |||| |||||| |
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| T |
19946 |
acaaatcttgccgcaatgattcagtgttttgaatggaaggtt---ggtggtaatggaaaagttaacatggatgagaaagcggccacgagccttccaaggg |
20042 |
T |
|
| Q |
466 |
ctcatcctttaatttgtgtccc |
487 |
Q |
| |
|
|||||||||| ||||||||||| |
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|
| T |
20043 |
ctcatcctttgatttgtgtccc |
20064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 365 - 488
Target Start/End: Complemental strand, 9688 - 9568
Alignment:
| Q |
365 |
aacaaatcttgctgctatgattcaatgttttgaatggaaggttaaaggtggtaatgggattgttaatatggaagagaaacctgggttgaccctttcaagg |
464 |
Q |
| |
|
||||||||||||||| ||||||||||||||| | |||||||||| ||||| |||| | ||||| |||||||||||||| | ||||||||| | ||| |
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| T |
9688 |
aacaaatcttgctgcaatgattcaatgtttttattggaaggtta---gtggtgatggaacagttaacatggaagagaaaccagctttgacccttcctagg |
9592 |
T |
|
| Q |
465 |
gctcatcctttaatttgtgtccct |
488 |
Q |
| |
|
||||||||||| || ||||||||| |
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|
| T |
9591 |
gctcatcctttgatgtgtgtccct |
9568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 265
Target Start/End: Complemental strand, 6026942 - 6026839
Alignment:
| Q |
162 |
ccagcaaagacacaattgtttgttaatatatggtctattggaagggaccctaattattgggataatccacttgagtttaggccagaaaggtttattaatg |
261 |
Q |
| |
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|||||||||||| |||||||||||| ||||| | ||||| || ||| | ||||||||||| ||||||||||||||| ||| ||||||||| |||| |
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| T |
6026942 |
ccagcaaagacaactttgtttgttaatttatgggcaattggtagagactcaaattattgggaaaatccacttgagtttcaaccactaaggtttataaatg |
6026843 |
T |
|
| Q |
262 |
aagt |
265 |
Q |
| |
|
|||| |
|
|
| T |
6026842 |
aagt |
6026839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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