View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12194_low_9 (Length: 581)

Name: NF12194_low_9
Description: NF12194
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12194_low_9
NF12194_low_9
[»] chr7 (24 HSPs)
chr7 (11-295)||(46091817-46092101)
chr7 (292-581)||(46091493-46091782)
chr7 (11-273)||(46086737-46086998)
chr7 (482-547)||(12835011-12835076)
chr7 (483-538)||(5006584-5006639)
chr7 (483-541)||(35536044-35536102)
chr7 (483-581)||(39539836-39539934)
chr7 (483-544)||(24973878-24973939)
chr7 (332-411)||(44808228-44808307)
chr7 (487-553)||(30496629-30496695)
chr7 (502-544)||(33894557-33894599)
chr7 (483-533)||(39591542-39591592)
chr7 (497-555)||(40191414-40191472)
chr7 (342-403)||(8094384-8094445)
chr7 (483-532)||(22759132-22759181)
chr7 (484-533)||(28178914-28178963)
chr7 (488-533)||(43152982-43153027)
chr7 (483-556)||(45593794-45593867)
chr7 (483-539)||(1417203-1417259)
chr7 (501-533)||(5715131-5715163)
chr7 (484-544)||(15328540-15328600)
chr7 (499-539)||(35007543-35007583)
chr7 (483-543)||(45813255-45813315)
chr7 (355-403)||(46086519-46086567)
[»] chr4 (19 HSPs)
chr4 (483-561)||(30024617-30024695)
chr4 (488-581)||(3662246-3662338)
chr4 (483-580)||(42321954-42322051)
chr4 (496-560)||(2980559-2980623)
chr4 (501-581)||(14011131-14011211)
chr4 (327-382)||(32420974-32421029)
chr4 (329-379)||(29600942-29600992)
chr4 (342-412)||(49003973-49004042)
chr4 (501-555)||(51555960-51556014)
chr4 (488-541)||(7601696-7601749)
chr4 (484-544)||(25548182-25548240)
chr4 (484-544)||(51044534-51044595)
chr4 (517-581)||(9843775-9843839)
chr4 (488-532)||(17884014-17884058)
chr4 (501-581)||(19422315-19422395)
chr4 (483-543)||(30338667-30338727)
chr4 (329-397)||(36462101-36462169)
chr4 (504-544)||(47970252-47970292)
chr4 (424-472)||(50400493-50400541)
[»] chr1 (23 HSPs)
chr1 (55-225)||(37476477-37476647)
chr1 (483-560)||(40304129-40304206)
chr1 (496-542)||(172277-172323)
chr1 (333-445)||(10199330-10199445)
chr1 (484-540)||(50319230-50319286)
chr1 (487-533)||(37841943-37841989)
chr1 (484-558)||(38651485-38651559)
chr1 (329-382)||(37416904-37416957)
chr1 (485-574)||(40357963-40358052)
chr1 (483-556)||(44032074-44032147)
chr1 (347-388)||(45769692-45769733)
chr1 (483-520)||(47877080-47877117)
chr1 (484-557)||(48748659-48748731)
chr1 (501-541)||(2194451-2194491)
chr1 (332-400)||(3319867-3319935)
chr1 (486-542)||(4549802-4549858)
chr1 (484-532)||(14737781-14737829)
chr1 (483-539)||(23895275-23895331)
chr1 (484-536)||(26293182-26293234)
chr1 (504-576)||(33339516-33339588)
chr1 (487-539)||(36151584-36151636)
chr1 (488-544)||(46499934-46499990)
chr1 (485-533)||(49517015-49517063)
[»] chr8 (18 HSPs)
chr8 (483-555)||(7026654-7026726)
chr8 (485-540)||(42597339-42597394)
chr8 (332-411)||(9700071-9700150)
chr8 (488-559)||(14482121-14482192)
chr8 (486-560)||(10727115-10727189)
chr8 (489-533)||(30627983-30628027)
chr8 (486-544)||(1112787-1112845)
chr8 (483-541)||(14280476-14280534)
chr8 (487-541)||(37444494-37444548)
chr8 (484-554)||(40280281-40280351)
chr8 (483-560)||(3645891-3645968)
chr8 (483-544)||(4558732-4558793)
chr8 (483-560)||(13652133-13652210)
chr8 (483-560)||(13710776-13710853)
chr8 (489-554)||(29592254-29592319)
chr8 (483-528)||(35374448-35374493)
chr8 (501-541)||(26215433-26215473)
chr8 (506-554)||(27320240-27320288)
[»] chr3 (22 HSPs)
chr3 (506-580)||(25185891-25185965)
chr3 (501-581)||(52450145-52450225)
chr3 (484-555)||(16790432-16790503)
chr3 (483-533)||(15304422-15304472)
chr3 (484-554)||(44374720-44374790)
chr3 (483-544)||(1395605-1395666)
chr3 (501-581)||(24235776-24235856)
chr3 (501-577)||(25964343-25964419)
chr3 (483-531)||(36783409-36783457)
chr3 (501-581)||(41159006-41159086)
chr3 (332-412)||(50211804-50211884)
chr3 (488-539)||(2128331-2128382)
chr3 (483-533)||(10101551-10101601)
chr3 (483-533)||(10212476-10212526)
chr3 (483-533)||(36646457-36646507)
chr3 (483-533)||(42809246-42809296)
chr3 (483-533)||(49586991-49587041)
chr3 (483-544)||(20192681-20192742)
chr3 (485-579)||(48364956-48365046)
chr3 (500-581)||(48528475-48528556)
chr3 (483-539)||(32703077-32703133)
chr3 (484-540)||(40122828-40122884)
[»] chr5 (14 HSPs)
chr5 (483-560)||(6733968-6734044)
chr5 (499-544)||(13224363-13224408)
chr5 (485-521)||(36157912-36157948)
chr5 (501-544)||(7096220-7096263)
chr5 (485-532)||(10363696-10363743)
chr5 (501-560)||(20982228-20982287)
chr5 (483-560)||(9202823-9202901)
chr5 (485-539)||(12407738-12407792)
chr5 (500-554)||(26516222-26516276)
chr5 (536-581)||(1084234-1084279)
chr5 (483-528)||(12975297-12975342)
chr5 (483-544)||(29588814-29588874)
chr5 (490-543)||(39128574-39128627)
chr5 (484-560)||(37618915-37618991)
[»] chr6 (16 HSPs)
chr6 (483-553)||(1810378-1810445)
chr6 (483-542)||(29274304-29274363)
chr6 (483-533)||(281923-281973)
chr6 (483-553)||(10452435-10452505)
chr6 (483-533)||(24782004-24782054)
chr6 (483-544)||(4006648-4006709)
chr6 (505-581)||(4247731-4247807)
chr6 (516-576)||(8010259-8010319)
chr6 (331-403)||(26559159-26559231)
chr6 (487-541)||(9093635-9093689)
chr6 (483-581)||(9668060-9668158)
chr6 (483-529)||(30537021-30537067)
chr6 (329-382)||(12111066-12111119)
chr6 (502-575)||(27889937-27890010)
chr6 (487-539)||(24836278-24836330)
chr6 (486-542)||(33068639-33068695)
[»] chr2 (22 HSPs)
chr2 (484-544)||(11344360-11344420)
chr2 (499-581)||(7936923-7937005)
chr2 (483-560)||(3673725-3673802)
chr2 (481-554)||(35809857-35809929)
chr2 (422-550)||(25609724-25609852)
chr2 (488-544)||(36114603-36114659)
chr2 (483-558)||(18962113-18962188)
chr2 (487-533)||(656856-656902)
chr2 (483-560)||(11393440-11393518)
chr2 (483-560)||(11410101-11410179)
chr2 (332-382)||(15370244-15370294)
chr2 (483-581)||(17952776-17952874)
chr2 (484-542)||(32098384-32098442)
chr2 (483-533)||(40837503-40837553)
chr2 (501-542)||(5133708-5133749)
chr2 (483-544)||(28902011-28902072)
chr2 (487-560)||(35459828-35459901)
chr2 (504-540)||(21280489-21280525)
chr2 (517-581)||(26484193-26484257)
chr2 (334-378)||(33931493-33931537)
chr2 (501-569)||(35329912-35329980)
chr2 (504-540)||(44064393-44064429)
[»] scaffold0024 (1 HSPs)
scaffold0024 (483-544)||(27510-27571)
[»] scaffold0590 (1 HSPs)
scaffold0590 (501-553)||(1167-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (501-553)||(2756-2808)
[»] scaffold0020 (1 HSPs)
scaffold0020 (501-543)||(160065-160107)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 46092101 - 46091817
Alignment:
Q  11 cctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttc 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46092101 cctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttc 46092002  T
Q  111 cttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46092001 cttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctg 46091902  T
Q  211 cattttttagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaatgacctccatagtcaaagatag 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091901 cattttttagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaatgacctccatagtcaaagatag 46091817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 292 - 581
Target Start/End: Complemental strand, 46091782 - 46091493
Alignment:
Q  292 atagtcgttaaactaattatcacatcacaccaaatgtctatttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatag 391  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091782 atagtcgttatactaattatcacatcacaccaaatgtctatttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatag 46091683  T
Q  392 aacttatgaaaataatttatattttcatccgttgttttcaacttattttcataaacttttcattataatttctgaaaacaaactatggtaaatatgaaaa 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  46091682 aacttatgaaaataatttatattttcatccgttgttttcaacttattttcataaacttttcatgataatttctgaaaacaaactatggtaaatatgaaaa 46091583  T
Q  492 caattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46091582 caattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 46091493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 46086998 - 46086737
Alignment:
Q  11 cctgtgaagcagcatctacaagagcagataggattgcattatctcttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttc 110  Q
    |||||||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  46086998 cctgtgaagcagcatcaacaagagcagattggattgcatcatgtcttgctttttcaacatgagcagatctaatattgttaacatagagcttcacactttc 46086899  T
Q  111 cttgaccccacatgctaaagttccagagcccatatcaaagcaatttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctg 210  Q
     || ||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |  |||| ||||||||||||||||    
T  46086898 tttaaccccacatgctaaacttccagagcccaaatcaaagcaatttaataatgtaaacttcccacttttggatgacgcgttctcgccaacaagctccctg 46086799  T
Q  211 cattttttagctgaatagagaaaacattttatgagcataagcaaaaaattataattaatgaaa 273  Q
    ||||||| |||||||  ||||||||| | | ||| ||||| | | |||||||| |||||||||    
T  46086798 catttttcagctgaacggagaaaacagtgtgtgatcataaac-agaaattatagttaatgaaa 46086737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 547
Target Start/End: Original strand, 12835011 - 12835076
Alignment:
Q  482 aatatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcat 547  Q
    |||||||||||||||| | |||||||||||||| ||| ||| |||||| | |||||||||||||||    
T  12835011 aatatgaaaacaatttgactttattttatcttttgttgtagaaatagcatctgcataagcactcat 12835076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 538
Target Start/End: Original strand, 5006584 - 5006639
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcata 538  Q
    ||||||||||| ||| | |||||||||||||| |||||||||||||||||| ||||    
T  5006584 atatgaaaacagtttgactttattttatcttttgttataggaatagcttatacata 5006639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 541
Target Start/End: Complemental strand, 35536102 - 35536044
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 541  Q
    ||||||||||||||| | |||||||||||||  ||||||| |||||||||| |||||||    
T  35536102 atatgaaaacaatttgactttattttatcttatgttatagaaatagcttatacataagc 35536044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 581
Target Start/End: Original strand, 39539836 - 39539934
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||||||||||||| | ||||||||  ||||  |||| | |||||||||| || ||||| | || |||||| ||||| ||||| ||||||||||||||    
T  39539836 atatgaaaacaatttgaatttattttcacttttattatcgaaatagcttatacaaaagcagttatatgataagcacttaattaagttgtttatccaaac 39539934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 24973939 - 24973878
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||| ||||||||| | |||||||||||||| ||||||| |||||||| | ||||||||||    
T  24973939 atatggaaacaatttgaatttattttatcttttgttatagaaatagcttttacataagcact 24973878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 44808307 - 44808228
Alignment:
Q  332 tttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttat 411  Q
    ||||||| | |||||||||||| || || ||| ||||||| |||| |||||  |||||||| ||||||||||||| ||||    
T  44808307 tttggataaccttatttgagcttatttattagcataagcagttgtcagactgtttgatagaccttatgaaaataacttat 44808228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 553
Target Start/End: Complemental strand, 30496695 - 30496629
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 553  Q
    ||||||||||| | |||||||||| ||| ||||||| ||||| |||| ||||| |||| ||||||||    
T  30496695 gaaaacaatttgactttattttatattttgttatagaaatagtttatacataaacacttatgtgata 30496629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 544
Target Start/End: Complemental strand, 33894599 - 33894557
Alignment:
Q  502 ttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||||| ||||||| |||||||||| ||||||||||    
T  33894599 ttattttatcttttgttatagaaatagcttatacataagcact 33894557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 39591542 - 39591592
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||||| | |||||||||||||| ||||||| |||| |||||    
T  39591542 atatgaaaacaatttgactttattttatcttttgttatagaaataacttat 39591592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 555
Target Start/End: Original strand, 40191414 - 40191472
Alignment:
Q  497 ttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 555  Q
    |||||||||||||||||| ||| ||| ||||||||| |||| || |||||| |||||||    
T  40191414 ttattttattttatcttttgttttagaaatagcttaagcattagtactcatatgataaa 40191472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 8094445 - 8094384
Alignment:
Q  342 cttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaa 403  Q
    |||||||||||| ||||| ||| ||||||| ||||||||||| |||| |||  |||||||||    
T  8094445 cttatttgagcttatctactagcataagcacttgtgagactatttgagagattttatgaaaa 8094384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 532
Target Start/End: Complemental strand, 22759181 - 22759132
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagctta 532  Q
    ||||||||||||||||  |||||||||||||| ||||||  |||||||||    
T  22759181 atatgaaaacaattttcctttattttatcttttgttatacaaatagctta 22759132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 533
Target Start/End: Complemental strand, 28178963 - 28178914
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    |||||||||||| | | |||||||||||||| ||||||| ||||||||||    
T  28178963 tatgaaaacaatatgactttattttatcttttgttatagaaatagcttat 28178914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 533
Target Start/End: Original strand, 43152982 - 43153027
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    |||||||||| | |||||||||||||| ||||||| ||||||||||    
T  43152982 aaaacaatttaactttattttatcttttgttatagaaatagcttat 43153027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 45593794 - 45593867
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaac 556  Q
    ||||||||||| ||| | |||||||||| ||| |||| || |||||||||| |||||||| | || ||||||||    
T  45593794 atatgaaaacagtttgactttattttatgttttgttacagaaatagcttatacataagcatttatatgataaac 45593867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 1417259 - 1417203
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataa 539  Q
    ||||||||||||||| | |||||||||||||| ||||||  ||||| |||| |||||    
T  1417259 atatgaaaacaatttgactttattttatcttttgttatataaatagtttatacataa 1417203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 533
Target Start/End: Original strand, 5715131 - 5715163
Alignment:
Q  501 tttattttatctttcgttataggaatagcttat 533  Q
    |||||||||||||||||||||| ||||||||||    
T  5715131 tttattttatctttcgttatagaaatagcttat 5715163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 544
Target Start/End: Complemental strand, 15328600 - 15328540
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||| |||| |||| | ||||||||||||||  |||||| ||||| |||||||||||||||    
T  15328600 tatgtaaacgatttaactttattttatcttttattatagaaatagattatgcataagcact 15328540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 35007583 - 35007543
Alignment:
Q  499 attttattttatctttcgttataggaatagcttatgcataa 539  Q
    |||||||||||||||| ||||||| |||||||||| |||||    
T  35007583 attttattttatctttagttatagaaatagcttatacataa 35007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 543
Target Start/End: Original strand, 45813255 - 45813315
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcac 543  Q
    |||||||||||| || | |||||||||||||| | ||||| ||||||||||  ||||||||    
T  45813255 atatgaaaacaagttgactttattttatcttttggtatagaaatagcttataaataagcac 45813315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 46086567 - 46086519
Alignment:
Q  355 atctaatagtataagcatttgtgagactaattgatagaacttatgaaaa 403  Q
    ||||||| |||||| |||||||||||||| |||| ||| ||||||||||    
T  46086567 atctaatggtataaacatttgtgagactatttgaaagagcttatgaaaa 46086519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 483 - 561
Target Start/End: Complemental strand, 30024695 - 30024617
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttc 561  Q
    ||||||||||||||||| |||||||||||||| ||||||| |||| |||||||||||| ||| || |||||||| ||||    
T  30024695 atatgaaaacaattttactttattttatcttttgttatagaaataacttatgcataagtacttatatgataaacgcttc 30024617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 488 - 581
Target Start/End: Complemental strand, 3662338 - 3662246
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    |||||| ||| | |||||||||||||| ||||||||||||| |||| |||||||||| |  |||||||||||| | |||  |||||| ||||||    
T  3662338 aaaacagtttgactttattttatcttttgttataggaatagtttat-cataagcactaacatgataaacacttaagtaagctgtttagccaaac 3662246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 580
Target Start/End: Original strand, 42321954 - 42322051
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaa 580  Q
    ||||||||||||||| | ||||||||||| || ||||||  |||||||||| ||||| |||| |||  |||| | | ||| ||| |||||||||||||    
T  42321954 atatgaaaacaatttgactttattttatcatttgttataaaaatagcttattcataaacacttatgctataagcgcctcactaagttgtttatccaaa 42322051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 496 - 560
Target Start/End: Original strand, 2980559 - 2980623
Alignment:
Q  496 tttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    |||||||| ||| || ||| ||||||| |||||||||| |||||||||| || ||||||||||||    
T  2980559 tttattttgtttcattttttgttatagaaatagcttatacataagcacttatatgataaacactt 2980623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 581
Target Start/End: Complemental strand, 14011211 - 14011131
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    |||||||||||||| ||||||  | |||||||| || || || | || |||||||||||| ||||| ||||||||||||||    
T  14011211 tttattttatcttttgttataaaactagcttatacacaatcatttatatgataaacacttaattaagttgtttatccaaac 14011131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 382
Target Start/End: Original strand, 32420974 - 32421029
Alignment:
Q  327 gtctatttggattaacttatttgagctcatctaatagtataagcatttgtgagact 382  Q
    ||||||||||||| ||||||||||||| | ||| ||| ||||||| ||||||||||    
T  32420974 gtctatttggattgacttatttgagcttacctactagcataagcacttgtgagact 32421029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 29600942 - 29600992
Alignment:
Q  329 ctatttggattaacttatttgagctcatctaatagtataagcatttgtgag 379  Q
    ||||||||||| ||||||||||||| || |  |||||||||||||||||||    
T  29600942 ctatttggatttacttatttgagcttatttgctagtataagcatttgtgag 29600992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 412
Target Start/End: Original strand, 49003973 - 49004042
Alignment:
Q  342 cttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttata 412  Q
    |||||||||||| ||||| |||  ||||  |||||||||||| |||| ||||||||||||||||| |||||    
T  49003973 cttatttgagcttatctactagcttaagt-tttgtgagactatttgagagaacttatgaaaataagttata 49004042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 555
Target Start/End: Original strand, 51555960 - 51556014
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 555  Q
    |||||||||||||| ||||||  |||||||||| |||||||||| || |||||||    
T  51555960 tttattttatcttttgttataataatagcttatacataagcacttatatgataaa 51556014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 541
Target Start/End: Complemental strand, 7601749 - 7601696
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 541  Q
    |||||||||| | ||||||||||| || | |||||||||||||||| |||||||    
T  7601749 aaaacaatttaactttattttatcctttgctataggaatagcttatacataagc 7601696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 544
Target Start/End: Original strand, 25548182 - 25548240
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||| || | ||||||||| |||  ||||||| |||||||||||||||||||||    
T  25548182 tatgaaaacaacttaactttattttacctt--gttatagaaatagcttatgcataagcact 25548240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 544
Target Start/End: Original strand, 51044534 - 51044595
Alignment:
Q  484 tatgaaaacaatttt-attttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||| ||| | |||||||||||||| ||||||| |||||||||| ||||| ||||    
T  51044534 tatgaaaacaagtttgactttattttatcttttgttatagaaatagcttatacataaacact 51044595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 581
Target Start/End: Original strand, 9843775 - 9843839
Alignment:
Q  517 ttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    |||||| |||||||||| |||||||| | || |||||| |||||  |||| ||||||||||||||    
T  9843775 ttatagaaatagcttatacataagcagttatatgataagcacttatttaagttgtttatccaaac 9843839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 532
Target Start/End: Complemental strand, 17884058 - 17884014
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagctta 532  Q
    |||||||||| | |||||||||||||| ||||||| |||||||||    
T  17884058 aaaacaatttaactttattttatcttttgttatagaaatagctta 17884014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 581
Target Start/End: Complemental strand, 19422395 - 19422315
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    |||||| ||||||| ||||||| |||| ||||| |||||||| | || |||||| | ||| |||||  |||||||||||||    
T  19422395 tttattatatcttttgttatagaaataacttatacataagcatttatatgataagcgcttaattaagctgtttatccaaac 19422315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 543
Target Start/End: Original strand, 30338667 - 30338727
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcac 543  Q
    ||||||||||| ||| | |||||| ||||||| ||||||| ||||| |||| |||||||||    
T  30338667 atatgaaaacagtttaactttattctatcttttgttatagaaatagtttatacataagcac 30338727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 329 - 397
Target Start/End: Complemental strand, 36462169 - 36462101
Alignment:
Q  329 ctatttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaactta 397  Q
    ||||||||||||||||||||||  | || || | ||||||||| |||||||||| ||||| ||| ||||    
T  36462169 ctatttggattaacttatttgaatttatatattggtataagcaattgtgagactgattgagagagctta 36462101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 544
Target Start/End: Complemental strand, 47970292 - 47970252
Alignment:
Q  504 attttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||| ||||||| |||||||||| ||||||||||    
T  47970292 attttatcttttgttatagaaatagcttatacataagcact 47970252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 472
Target Start/End: Complemental strand, 50400541 - 50400493
Alignment:
Q  424 tgttttcaacttattttcataaacttttcattataatttctgaaaacaa 472  Q
    |||||||| |||||||||||||| ||||||| ||| ||| |||||||||    
T  50400541 tgttttcagcttattttcataaagttttcatgatagtttatgaaaacaa 50400493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 225
Target Start/End: Complemental strand, 37476647 - 37476477
Alignment:
Q  55 cttgctttttcaacatgagaagatctaatattgttagcatagagcttcacactttccttgaccccacatgctaaagttccagagcccatatcaaagcaat 154  Q
    ||||||||||||||||||| |||||||||| ||| |  |||||| || || | ||| |||||  ||||||| || |||||||| ||||| ||||| || |    
T  37476647 cttgctttttcaacatgagtagatctaatactgtaaaaatagagtttgacgccttctttgacagcacatgccaacgttccagaacccatgtcaaaacagt 37476548  T
Q  155 ttaagaatgtaaacttcccacttttggatgatgtattcttgccaacaagctccctgcattttttagctgaa 225  Q
    |||| ||||| ||||| ||||| | ||||||    | || ||||| ||||||||||||||||| |||||||    
T  37476547 ttaataatgtgaactttccactctgggatgacccctcctcgccaataagctccctgcatttttcagctgaa 37476477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 40304129 - 40304206
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||||||| | |||||||||||||||| ||||||  |||||||||| | |||||| | || ||||||||||||    
T  40304129 atatgaaaacaatgtgattttattttatcttttgttatataaatagcttatacctaagcaataatatgataaacactt 40304206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 496 - 542
Target Start/End: Complemental strand, 172323 - 172277
Alignment:
Q  496 tttattttattttatctttcgttataggaatagcttatgcataagca 542  Q
    ||||||||||||||||||| ||||||| |||||||||| ||||||||    
T  172323 tttattttattttatctttagttatagaaatagcttatacataagca 172277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 445
Target Start/End: Original strand, 10199330 - 10199445
Alignment:
Q  333 ttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttat---attttcatccgttgtttt 429  Q
    ||||||| ||||||||||||| ||||| ||  ||||||| |||||| |||| |||  |||||| |||||||||  ||||   || |||||  ||||||||    
T  10199330 ttggattgacttatttgagcttatctactaacataagcacttgtgacactatttgggagaactcatgaaaatagcttatgacatgttcataagttgtttt 10199429  T
Q  430 caacttattttcataa 445  Q
    || |||||||||||||    
T  10199430 cagcttattttcataa 10199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 540
Target Start/End: Complemental strand, 50319286 - 50319230
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataag 540  Q
    ||||||||||| || | |||||||||||||| ||||||| |||||||||| ||||||    
T  50319286 tatgaaaacaacttgactttattttatcttttgttatagaaatagcttatacataag 50319230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 533
Target Start/End: Complemental strand, 37841989 - 37841943
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||| | ||||||||||| || ||||||||||||||||||    
T  37841989 gaaaacaatttaactttattttatcatttgttataggaatagcttat 37841943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 558
Target Start/End: Original strand, 38651485 - 38651559
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacac 558  Q
    |||||||||||||  | |||| ||||||||| ||||||| | |||||||| |||||||||| |  ||||||||||    
T  38651485 tatgaaaacaattcgactttagtttatcttttgttatagaattagcttatacataagcacttacatgataaacac 38651559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 37416957 - 37416904
Alignment:
Q  329 ctatttggattaacttatttgagctcatctaatagtataagcatttgtgagact 382  Q
    |||||| |||||||||||||||||| ||||| | | |||||||| |||||||||    
T  37416957 ctatttagattaacttatttgagcttatctagtggcataagcatctgtgagact 37416904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 574
Target Start/End: Original strand, 40357963 - 40358052
Alignment:
Q  485 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgttta 574  Q
    ||||||||||||| | |||||||||||  | ||||||| |||||||||| ||||  |||| || | |||| ||||| ||||| |||||||    
T  40357963 atgaaaacaatttgactttattttatccattgttatagaaatagcttatacatagtcacttatataataagcacttaattaatttgttta 40358052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 556
Target Start/End: Original strand, 44032074 - 44032147
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaac 556  Q
    ||||||||||||||| | ||||||||| |||| ||||||| ||  |||||| ||||| |||| || ||||||||    
T  44032074 atatgaaaacaatttgactttattttagcttttgttatagaaacggcttatacataaacacttatatgataaac 44032147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 45769692 - 45769733
Alignment:
Q  347 ttgagctcatctaatagtataagcatttgtgagactaattga 388  Q
    ||||||| ||||| |||||||||||||||||||||| |||||    
T  45769692 ttgagcttatctactagtataagcatttgtgagacttattga 45769733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 520
Target Start/End: Complemental strand, 47877117 - 47877080
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttat 520  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  47877117 atatgaaaacaatttgattttattttatcttttgttat 47877080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 557
Target Start/End: Original strand, 48748659 - 48748731
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaaca 557  Q
    |||||||||||||| | ||||||| |||||| | ||||| |||||||||| |||||||||  || |||||||||    
T  48748659 tatgaaaacaatttaactttatttcatcttttg-tatagaaatagcttatacataagcacatatatgataaaca 48748731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 541
Target Start/End: Original strand, 2194451 - 2194491
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagc 541  Q
    |||||||||||| | ||||||| ||||||||||||||||||    
T  2194451 tttattttatctattgttatagaaatagcttatgcataagc 2194491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 3319867 - 3319935
Alignment:
Q  332 tttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatga 400  Q
    |||||||| ||||||||||||| ||||| ||| | ||||| || ||||||| ||||| ||| |||||||    
T  3319867 tttggattgacttatttgagcttatctactagcaaaagcaattatgagactgattgaaagagcttatga 3319935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 542
Target Start/End: Complemental strand, 4549858 - 4549802
Alignment:
Q  486 tgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagca 542  Q
    |||| ||||||| | |||||||||||||| ||||||| |||||||| | ||||||||    
T  4549858 tgaagacaatttaactttattttatcttttgttatagaaatagcttgtacataagca 4549802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 14737781 - 14737829
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagctta 532  Q
    |||||||||||||| | |||||||||||||| ||||||| |||| ||||    
T  14737781 tatgaaaacaatttgactttattttatcttttgttatagaaataactta 14737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 23895331 - 23895275
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataa 539  Q
    |||||| |||| ||| | |||||||||||||| ||||||| |||||||||| |||||    
T  23895331 atatgagaacagtttgaatttattttatcttttgttatagaaatagcttatacataa 23895275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 536
Target Start/End: Original strand, 26293182 - 26293234
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgca 536  Q
    |||||||||||||| | |||||||||  ||| ||||||| |||||||||||||    
T  26293182 tatgaaaacaatttgactttattttactttttgttatagaaatagcttatgca 26293234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 576
Target Start/End: Original strand, 33339516 - 33339588
Alignment:
Q  504 attttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatc 576  Q
    ||||||||||| | ||||| |||||||||| ||||| |||  || |||||| ||||| ||||| |||||||||    
T  33339516 attttatcttttggtatagaaatagcttatacataaacacctatatgataaccacttaattaagttgtttatc 33339588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 36151584 - 36151636
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataa 539  Q
    ||||||||||| | |||||||||||||| ||||| | |||||||||| |||||    
T  36151584 gaaaacaatttgactttattttatcttttgttattgaaatagcttatacataa 36151636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 46499934 - 46499990
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||||||||| | ||||||||||||||  |||||| ||||||||||  |||||||||    
T  46499934 aaaacaatttgactttattttatcttttcttatagaaatagcttatagataagcact 46499990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 533
Target Start/End: Complemental strand, 49517063 - 49517015
Alignment:
Q  485 atgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||| | |||||||||||||| ||||||| |||| |||||    
T  49517063 atgaaaacaatttgactttattttatcttttgttatagaaataacttat 49517015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 483 - 555
Target Start/End: Complemental strand, 7026726 - 7026654
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 555  Q
    ||||||||||||||||| |||||||||||||| ||||||  | ||||||||||||||||||| || |||||||    
T  7026726 atatgaaaacaattttactttattttatcttttgttataacagtagcttatgcataagcacttatatgataaa 7026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 42597394 - 42597339
Alignment:
Q  485 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataag 540  Q
    ||||||||||||||| |||||||||||||| ||||||| |||||||||| ||||||    
T  42597394 atgaaaacaattttactttattttatcttttgttatagaaatagcttatacataag 42597339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 332 - 411
Target Start/End: Complemental strand, 9700150 - 9700071
Alignment:
Q  332 tttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttat 411  Q
    |||||||||||||||||||||| ||||| ||| |||| || ||||||||||| |||| ||| ||| |||||  |||||||    
T  9700150 tttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagcttgtgaaatcaatttat 9700071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 559
Target Start/End: Complemental strand, 14482192 - 14482121
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacact 559  Q
    |||||||||| | |||||||||||||| ||||||| ||||| |||| |||||||||| || |||||| ||||    
T  14482192 aaaacaatttgactttattttatcttttgttatagaaatagtttatacataagcacttatatgataagcact 14482121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 560
Target Start/End: Complemental strand, 10727189 - 10727115
Alignment:
Q  486 tgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    |||||||| ||| | ||||||| |||||| | ||||| ||||||||||||||||||||| || |||| |||||||    
T  10727189 tgaaaacactttgaatttatttcatcttttgctatagaaatagcttatgcataagcacttatatgatgaacactt 10727115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 489 - 533
Target Start/End: Original strand, 30627983 - 30628027
Alignment:
Q  489 aaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    |||||||||||||||||||||||||| |||| || ||||||||||    
T  30627983 aaacaattttattttattttatcttttgttacagaaatagcttat 30628027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 544
Target Start/End: Complemental strand, 1112845 - 1112787
Alignment:
Q  486 tgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||||||||||| |  ||||||||||||| ||||||| |||||| ||| ||||||||||    
T  1112845 tgaaaacaatttaaccttattttatcttttgttatagaaatagcatatacataagcact 1112787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 541
Target Start/End: Original strand, 14280476 - 14280534
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 541  Q
    ||||||||||||||| |||| ||||||||||| | ||||| ||||| |||| |||||||    
T  14280476 atatgaaaacaatttaatttaattttatcttttgctatagaaataggttatacataagc 14280534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 37444494 - 37444548
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 541  Q
    ||||||||||| | |||| ||||||||| ||||||| |||||||||| |||||||    
T  37444494 gaaaacaatttaactttactttatcttttgttatagtaatagcttatacataagc 37444548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 40280281 - 40280351
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 554  Q
    |||||||||||||||| |||||||||||||| ||| ||| |||| |||||  ||| ||||| || ||||||    
T  40280281 tatgaaaacaattttactttattttatcttttgttgtagaaataacttatatataggcacttatatgataa 40280351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 3645891 - 3645968
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||| | ||| ||||| |||||| |||  |||||| |||||||||| || ||||||| || ||||||||||||    
T  3645891 atatgaaaatagtttgattttgttttatattttcttatagaaatagcttatacacaagcacttatatgataaacactt 3645968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 4558793 - 4558732
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||| ||||| | ||||||||||||||  |||||| |||||||||| ||||| ||||    
T  4558793 atatgaaaataatttaactttattttatcttttattatagaaatagcttatacataaacact 4558732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 560
Target Start/End: Complemental strand, 13652210 - 13652133
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||||||||| | || |||  |||||| | ||||| |||||||||| |||||||||| |  ||||||||||||    
T  13652210 atatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcacttagatgataaacactt 13652133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 560
Target Start/End: Complemental strand, 13710853 - 13710776
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||||||||| | || |||  |||||| | ||||| |||||||||| |||||||||| |  ||||||||||||    
T  13710853 atatgaaaacaatttcacttcattccatcttttgctatagaaatagcttatacataagcacttagatgataaacactt 13710776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 554
Target Start/End: Original strand, 29592254 - 29592319
Alignment:
Q  489 aaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 554  Q
    |||| ||||||||||||||||| ||| ||| ||  ||||||||||||| ||||||| || ||||||    
T  29592254 aaactattttattttattttatattttgttgtaaaaatagcttatgcagaagcactaatatgataa 29592319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 528
Target Start/End: Original strand, 35374448 - 35374493
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatag 528  Q
    ||||||||||||||| | |||||||||||||||| ||||| |||||    
T  35374448 atatgaaaacaatttaactttattttatctttcgctatagaaatag 35374493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 541
Target Start/End: Complemental strand, 26215473 - 26215433
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagc 541  Q
    |||||||||||||| ||||||| |||||||||| |||||||    
T  26215473 tttattttatcttttgttatagaaatagcttatacataagc 26215433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 506 - 554
Target Start/End: Complemental strand, 27320288 - 27320240
Alignment:
Q  506 tttatctttcgttataggaatagcttatgcataagcactcatgtgataa 554  Q
    ||||||||| | |||||||||||||||| | |||||||| |||||||||    
T  27320288 tttatcttttgctataggaatagcttatacgtaagcacttatgtgataa 27320240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 506 - 580
Target Start/End: Complemental strand, 25185965 - 25185891
Alignment:
Q  506 tttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaa 580  Q
    ||||||||| ||||||  |||| ||||| |||||||||| || |||||||||||| ||||| |||||||||||||    
T  25185965 tttatcttttgttatataaatatcttattcataagcacttatatgataaacacttaattaagttgtttatccaaa 25185891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 501 - 581
Target Start/End: Original strand, 52450145 - 52450225
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||||| |||||| ||||||| ||| ||||||||||||| |||  | |||||||||||| |||||  |||||||||||||    
T  52450145 tttatttcatcttttgttatagaaattgcttatgcataagtacttgtatgataaacacttgattaagctgtttatccaaac 52450225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 484 - 555
Target Start/End: Original strand, 16790432 - 16790503
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaa 555  Q
    |||||||| ||||| |||||||||||||| | ||||||  |||||||||| |||||||||| || |||||||    
T  16790432 tatgaaaataatttgattttattttatctgttgttataaaaatagcttatacataagcacttatatgataaa 16790503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 15304422 - 15304472
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||||| | |||||||||||||| ||||||| ||||||||||    
T  15304422 atatgaaaacaatttaactttattttatcttttgttatagaaatagcttat 15304472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 484 - 554
Target Start/End: Original strand, 44374720 - 44374790
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 554  Q
    |||||||||||||| | |||||||||||||| |||| ||  ||||||||| |||||||||| || ||||||    
T  44374720 tatgaaaacaatttgactttattttatcttttgttaaagatatagcttatacataagcacttatatgataa 44374790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 1395666 - 1395605
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||| ||||| | |||||||||||||| ||||||| |||||||||| |||| |||||    
T  1395666 atatgaaaataatttgactttattttatcttttgttatagaaatagcttatacatatgcact 1395605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 581
Target Start/End: Original strand, 24235776 - 24235856
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||| |||||||| ||||||| |||| ||||| || |||  || |||| |||||||||| ||||| ||||||||||||||    
T  24235776 tttatattatcttttgttatagaaataacttatacacaagtgcttatgttataaacacttaattaagttgtttatccaaac 24235856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 577
Target Start/End: Complemental strand, 25964419 - 25964343
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatcc 577  Q
    |||||||||||||| ||||||  |||||||||| || ||| ||| || |||||| ||||| ||||| ||||||||||    
T  25964419 tttattttatcttttgttataaaaatagcttatacaaaagaacttatatgataagcacttaattaagttgtttatcc 25964343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 531
Target Start/End: Original strand, 36783409 - 36783457
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagctt 531  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||    
T  36783409 atatgaaaacaattttactttattttatcttttggtatagaaatagctt 36783457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 581
Target Start/End: Complemental strand, 41159086 - 41159006
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    |||||||||||||| |||||||||||| ||||| |||||||||| ||  ||||| |  || ||||| ||| ||||||||||    
T  41159086 tttattttatctttagttataggaataacttatacataagcacttatacgataagcgtttaattaagttggttatccaaac 41159006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 412
Target Start/End: Complemental strand, 50211884 - 50211804
Alignment:
Q  332 tttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaataatttata 412  Q
    ||||||||||||||||| |||| ||||| ||  ||||||| |||| |||||  |||| |||||||||||||| || |||||    
T  50211884 tttggattaacttattttagcttatctactaacataagcacttgtaagactgtttgagagaacttatgaaaacaacttata 50211804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 2128331 - 2128382
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagcttatgcataa 539  Q
    |||||||||| | |||||||||||||| ||||||| |||||||||| |||||    
T  2128331 aaaacaatttaactttattttatcttttgttatagaaatagcttatacataa 2128382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 10101551 - 10101601
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||||| | |||||||||||||| ||||||| |||| |||||    
T  10101551 atatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 10212476 - 10212526
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||||| | |||||||||||||| ||||||| |||| |||||    
T  10212476 atatgaaaacaatttaactttattttatcttttgttatagaaataacttat 10212526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 36646457 - 36646507
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    |||||||||||||| || |||||||||||||| || |||| ||||||||||    
T  36646457 atatgaaaacaattatactttattttatcttttgtcatagaaatagcttat 36646507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Complemental strand, 42809296 - 42809246
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||||| | | |||||||||||| ||||||| ||||||||||    
T  42809296 atatgaaaacaatttaactatattttatcttttgttatagaaatagcttat 42809246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 49586991 - 49587041
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||| ||| | |||||||||||||| ||||||| ||||||||||    
T  49586991 atatgaaaacagtttgactttattttatcttttgttatagaaatagcttat 49587041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 544
Target Start/End: Original strand, 20192681 - 20192742
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||  ||| | |||||||||||||| ||||||  |||||||||| ||||||||||    
T  20192681 atatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcact 20192742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 579
Target Start/End: Original strand, 48364956 - 48365046
Alignment:
Q  485 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaa 579  Q
    ||||||||||||| | |||||||||||||| ||||| | |||| ||||| |||||    |||| |||||||| ||| ||||| |||| |||||||    
T  48364956 atgaaaacaatttgactttattttatcttttgttatcgaaataacttatacataa----tcatatgataaactcttaattaatttgtatatccaa 48365046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 581
Target Start/End: Complemental strand, 48528556 - 48528475
Alignment:
Q  500 ttttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||||||||| | | ||||||| |||||||||| |||||| ||| || |||||| | ||| ||| | ||||||||||||||    
T  48528556 ttttattttatttcttgttatagaaatagcttatacataagtacttatatgataagctcttaattcagttgtttatccaaac 48528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 483 - 539
Target Start/End: Complemental strand, 32703133 - 32703077
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataa 539  Q
    ||||||||||||||| | ||||||||||||||  | |||| |||||||||| |||||    
T  32703133 atatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataa 32703077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 540
Target Start/End: Original strand, 40122828 - 40122884
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataag 540  Q
    |||||||||| ||| | |||||||||||||| ||||| | |||||||||| ||||||    
T  40122828 tatgaaaacagtttgactttattttatcttttgttattgaaatagcttatacataag 40122884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 6733968 - 6734044
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||||||||| | |||||||||||||||||||||  ||||| |||||||||| |||| || |||||| |||||    
T  6733968 atatgaaaacaattt-actttattttatctttcgttataaaaatagattatgcataaacacttatatgataatcactt 6734044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 499 - 544
Target Start/End: Complemental strand, 13224408 - 13224363
Alignment:
Q  499 attttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||||||||||||||| ||||||| |||||||||| ||||||||||    
T  13224408 attttattttatcttttgttatagaaatagcttatacataagcact 13224363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 36157912 - 36157948
Alignment:
Q  485 atgaaaacaattttattttattttatctttcgttata 521  Q
    |||||||||||||||||||||||||||||| ||||||    
T  36157912 atgaaaacaattttattttattttatcttttgttata 36157948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 544
Target Start/End: Original strand, 7096220 - 7096263
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||    
T  7096220 tttattttatcttttgttatagaaatagcttatacataagcact 7096263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 532
Target Start/End: Complemental strand, 10363743 - 10363696
Alignment:
Q  485 atgaaaacaattttattttattttatctttcgttataggaatagctta 532  Q
    ||||||||||||| | |||||||||||||| ||||||| |||||||||    
T  10363743 atgaaaacaatttaactttattttatcttttgttatagaaatagctta 10363696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 560
Target Start/End: Original strand, 20982228 - 20982287
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||||| || ||||||| |||||||||| |||||||||| || |||||| |||||    
T  20982228 tttattttatcctttgttatagaaatagcttatacataagcacttatatgataagcactt 20982287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 9202823 - 9202901
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcat-gtgataaacactt 560  Q
    ||||||||||||||| | |||||||||||||| | || || ||||||||||  ||||||||| ||  ||||||||||||    
T  9202823 atatgaaaacaatttaactttattttatcttttgctacagaaatagcttatatataagcacttatcatgataaacactt 9202901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 12407738 - 12407792
Alignment:
Q  485 atgaaaacaattttattttattttatctttcgttataggaatagcttatgcataa 539  Q
    |||||||||  |||| |||||||||||||| ||||||| |||||||||| |||||    
T  12407738 atgaaaacagatttactttattttatcttttgttatagaaatagcttatacataa 12407792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 554
Target Start/End: Complemental strand, 26516276 - 26516222
Alignment:
Q  500 ttttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 554  Q
    ||||||||||||||| ||| ||| |||||||||| |||||||||| || ||||||    
T  26516276 ttttattttatcttttgttttagaaatagcttatacataagcacttatatgataa 26516222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 536 - 581
Target Start/End: Original strand, 1084234 - 1084279
Alignment:
Q  536 ataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||||||| || |||||||||||| ||||| ||||||||||||||    
T  1084234 ataagcacttatatgataaacacttaattaagttgtttatccaaac 1084279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 528
Target Start/End: Complemental strand, 12975342 - 12975297
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatag 528  Q
    ||||||||||||||| ||||||||||||  || |||||||||||||    
T  12975342 atatgaaaacaatttgattttattttattctttgttataggaatag 12975297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 29588874 - 29588814
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||||||||   ||||||||| ||| ||||||| |||||||||| ||||||||||    
T  29588874 atatgaaaacaatttt-cattattttatattttgttatagaaatagcttatacataagcact 29588814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 543
Target Start/End: Complemental strand, 39128627 - 39128574
Alignment:
Q  490 aacaattttattttattttatctttcgttataggaatagcttatgcataagcac 543  Q
    |||||||| | |||||||||||||| ||||||| | |||||||| |||||||||    
T  39128627 aacaatttgactttattttatcttttgttatagaattagcttatacataagcac 39128574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 560
Target Start/End: Original strand, 37618915 - 37618991
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    |||| ||||| ||| |||| |||||||||||  | |||| |||||||| |||||||||||| ||  |||||||||||    
T  37618915 tatgtaaacagtttgatttcattttatcttttataatagaaatagcttttgcataagcacttatacgataaacactt 37618991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 483 - 553
Target Start/End: Original strand, 1810378 - 1810445
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 553  Q
    |||||||||||||   |||||||||||||||| ||||||| |||||||| |||||||||||| || |||||    
T  1810378 atatgaaaacaat---attttattttatcttttgttatagaaatagcttttgcataagcacttatatgata 1810445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 483 - 542
Target Start/End: Original strand, 29274304 - 29274363
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagca 542  Q
    ||||||||||||||| | |||||||||||||| | ||||| |||||||||| ||||||||    
T  29274304 atatgaaaacaatttgactttattttatcttttgctatagaaatagcttatacataagca 29274363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 281923 - 281973
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    |||||||||||| || | |||||||||||||| ||||||||||||||||||    
T  281923 atatgaaaacaagttgactttattttatcttttgttataggaatagcttat 281973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 553
Target Start/End: Original strand, 10452435 - 10452505
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 553  Q
    ||||||||| | ||| |||||||||||| ||| ||||||| |||||||||| |||||||||| || |||||    
T  10452435 atatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 533
Target Start/End: Complemental strand, 24782054 - 24782004
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||||||||||    
T  24782054 atatgaaaacaatttgatttgattttatcttttgttatagaaatagcttat 24782004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 4006709 - 4006648
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||| |||||||||| | ||||||||||| || ||||||| |||| ||||||||||||||||    
T  4006709 atataaaaacaatttgactttattttatcatttgttatagaaatatcttatgcataagcact 4006648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 505 - 581
Target Start/End: Original strand, 4247731 - 4247807
Alignment:
Q  505 ttttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    |||||||||| ||||||| |||||||||| |||||||||| |  |||||||||||  ||  || |||||||||||||    
T  4247731 ttttatcttttgttatagaaatagcttatacataagcacttacatgataaacactcaatcgaactgtttatccaaac 4247807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 516 - 576
Target Start/End: Complemental strand, 8010319 - 8010259
Alignment:
Q  516 gttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatc 576  Q
    ||||||| |||||||||| | |||||||| || |||||||||||| ||||| |||||||||    
T  8010319 gttatagaaatagcttatacctaagcacttatatgataaacacttaattaagttgtttatc 8010259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 331 - 403
Target Start/End: Original strand, 26559159 - 26559231
Alignment:
Q  331 atttggattaacttatttgagctcatctaatagtataagcatttgtgagactaattgatagaacttatgaaaa 403  Q
    ||||||||||||||||||||| | | ||| | | ||||||||||||||||||  |||  ||||||||||||||    
T  26559159 atttggattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttatgaaaa 26559231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 541
Target Start/End: Original strand, 9093635 - 9093689
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagc 541  Q
    ||||||||||| | |||||||||||||| | ||||| |||||||||| |||||||    
T  9093635 gaaaacaatttaactttattttatcttttgatatagaaatagcttatccataagc 9093689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 581
Target Start/End: Original strand, 9668060 - 9668158
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||||||||||||  | | ||| |||||||| ||||||  ||||||||||  |||||| || |||| |||| |  || ||||||||||||||||||||    
T  9668060 atatgaaaacaattcgactctatgttatcttttgttatacaaatagcttatatataagcgctgatgttataagcggttaattaaattgtttatccaaac 9668158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 529
Target Start/End: Original strand, 30537021 - 30537067
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagc 529  Q
    |||||||||||| || |||||||||||||||| ||||||| ||||||    
T  30537021 atatgaaaacaaattaattttattttatcttttgttatagaaatagc 30537067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 12111119 - 12111066
Alignment:
Q  329 ctatttggattaacttatttgagctcatctaatagtataagcatttgtgagact 382  Q
    ||||||||||| ||||||||||||| ||||| ||| ||||||| ||| ||||||    
T  12111119 ctatttggattgacttatttgagcttatctactagcataagcacttgcgagact 12111066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 575
Target Start/End: Original strand, 27889937 - 27890010
Alignment:
Q  502 ttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttat 575  Q
    ||||||||||| | ||||||| |||| ||| | ||||||||||||| |||||||  ||| ||||| ||||||||    
T  27889937 ttattttatctgttgttatagaaataacttgtacataagcactcatatgataaatgcttaattaagttgtttat 27890010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 539
Target Start/End: Original strand, 24836278 - 24836330
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataa 539  Q
    ||||||||||| | |||||||||||||| ||||||| |||| ||||| |||||    
T  24836278 gaaaacaatttgactttattttatcttttgttatagaaataacttatacataa 24836330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 542
Target Start/End: Original strand, 33068639 - 33068695
Alignment:
Q  486 tgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagca 542  Q
    |||||||| ||| || ||||||||||||| ||||||| |||| ||||| ||||||||    
T  33068639 tgaaaacagtttgatattattttatcttttgttatagaaataacttatacataagca 33068695  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 484 - 544
Target Start/End: Original strand, 11344360 - 11344420
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||||||||||||| | ||| |||||||||| ||||||| |||| ||||||||||||||||    
T  11344360 tatgaaaacaatttgactttcttttatcttttgttatagaaatatcttatgcataagcact 11344420  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 499 - 581
Target Start/End: Complemental strand, 7937005 - 7936923
Alignment:
Q  499 attttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||| |||||||||| ||||||| ||| | |||| |||||||||| |||| | || ||||| ||||| ||||||||||||||    
T  7937005 attttcttttatcttttgttatagaaatggtttatacataagcacttatgttaaaagcacttaattaagttgtttatccaaac 7936923  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 560
Target Start/End: Complemental strand, 3673802 - 3673725
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||||||||| | |||||||||| ||| ||||||| |||| || || |||||||||| || ||| ||||||||    
T  3673802 atatgaaaacaatttaactttattttatattttgttatagaaataactaatacataagcacttatatgacaaacactt 3673725  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 554
Target Start/End: Complemental strand, 35809929 - 35809857
Alignment:
Q  481 aaatatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataa 554  Q
    ||||||||||||||||| |||||||||||||||| || || | |||| ||||| |||||||||| || ||||||    
T  35809929 aaatatgaaaacaatttgattttattttatcttt-gtcatggaaataacttatacataagcacttatatgataa 35809857  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 422 - 550
Target Start/End: Complemental strand, 25609852 - 25609724
Alignment:
Q  422 gttgttttcaacttattttcataaacttttcattataatttctgaaaacaaactatggtaaatatgaaaacaattttattttattttatctttcgttata 521  Q
    ||||||||||| || ||| | ||||||||  | |||||||||| |||||||  ||| |   ||| ||||| || || | ||||||||||||||  |||||    
T  25609852 gttgttttcaatttctttccttaaactttctagtataatttctaaaaacaacttatagcttatacgaaaataaattgactttattttatcttttcttata 25609753  T
Q  522 ggaatagcttatgcataagcactcatgtg 550  Q
    | |||||||||| |||||||||| |||||    
T  25609752 gaaatagcttatacataagcacttatgtg 25609724  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 544
Target Start/End: Original strand, 36114603 - 36114659
Alignment:
Q  488 aaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    |||||||||| | |||||||||||||| ||||||| | ||| |||||||||||||||    
T  36114603 aaaacaatttaactttattttatcttttgttatagaactaggttatgcataagcact 36114659  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 558
Target Start/End: Original strand, 18962113 - 18962188
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacac 558  Q
    ||||||||||| ||| | |||||||||||||| ||||||  ||||||| || |||||||||| |  ||||||||||    
T  18962113 atatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataagcacttacatgataaacac 18962188  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 533
Target Start/End: Original strand, 656856 - 656902
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||| ||| |||||||||||| ||||||| ||||||||||    
T  656856 gaaaacaatttgattatattttatcttttgttatagaaatagcttat 656902  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 11393440 - 11393518
Alignment:
Q  483 atatgaaaac-aattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    |||||||||| ||||| | |||||| ||||||| | ||||| ||||||||||  ||||||||| || ||||||||||||    
T  11393440 atatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacactt 11393518  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 560
Target Start/End: Original strand, 11410101 - 11410179
Alignment:
Q  483 atatgaaaac-aattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    |||||||||| ||||| | |||||| ||||||| | ||||| ||||||||||  ||||||||| || ||||||||||||    
T  11410101 atatgaaaacgaatttgaatttattatatcttttgatatagaaatagcttatagataagcacttatatgataaacactt 11410179  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 15370244 - 15370294
Alignment:
Q  332 tttggattaacttatttgagctcatctaatagtataagcatttgtgagact 382  Q
    |||||||| ||||||||||||| ||||| | | ||||||||||||||||||    
T  15370244 tttggattgacttatttgagcttatctactggcataagcatttgtgagact 15370294  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 581
Target Start/End: Original strand, 17952776 - 17952874
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    ||||||||| | ||| | |||||||||||||| ||||||| ||||||||||  |||||| || || ||||||   ||| |||||||| |||| ||||||    
T  17952776 atatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataagctcttatatgataagtgctttattaaattttttaaccaaac 17952874  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 542
Target Start/End: Original strand, 32098384 - 32098442
Alignment:
Q  484 tatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagca 542  Q
    |||||||||| ||| | |||||||||||||| ||||||| ||||||||||  |||||||    
T  32098384 tatgaaaacactttgactttattttatcttttgttatagaaatagcttatatataagca 32098442  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 533
Target Start/End: Original strand, 40837503 - 40837553
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttat 533  Q
    ||||||||||||||| | |||| ||||||||| ||||||| ||||||||||    
T  40837503 atatgaaaacaatttgactttaatttatcttttgttatagaaatagcttat 40837553  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 501 - 542
Target Start/End: Complemental strand, 5133749 - 5133708
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagca 542  Q
    |||||||||||||| ||||||| |||||||||| ||||||||    
T  5133749 tttattttatcttttgttatagaaatagcttatacataagca 5133708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 28902072 - 28902011
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||| ||| ||||||||||| |||  ||||||  |||||||||| ||||||||||    
T  28902072 atatgaaaacagtttaattttattttaacttatgttataaaaatagcttatacataagcact 28902011  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 560
Target Start/End: Complemental strand, 35459901 - 35459828
Alignment:
Q  487 gaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacactt 560  Q
    ||||||||||| | |||||||||||||| | ||||  |||||||||| || || |||| || ||||||||||||    
T  35459901 gaaaacaatttgactttattttatcttttggtatacaaatagcttatacaaaatcacttatatgataaacactt 35459828  T

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Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Original strand, 21280489 - 21280525
Alignment:
Q  504 attttatctttcgttataggaatagcttatgcataag 540  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  21280489 attttatctttcggtatagaaatagcttatgcataag 21280525  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 581
Target Start/End: Original strand, 26484193 - 26484257
Alignment:
Q  517 ttataggaatagcttatgcataagcactcatgtgataaacacttcattaaattgtttatccaaac 581  Q
    |||||| |||||||||| |||||||||| || |||||||   || ||||| ||||||||||||||    
T  26484193 ttatagaaatagcttatccataagcacttatatgataaatgattaattaagttgtttatccaaac 26484257  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 334 - 378
Target Start/End: Original strand, 33931493 - 33931537
Alignment:
Q  334 tggattaacttatttgagctcatctaatagtataagcatttgtga 378  Q
    |||||||||||||||||||| | ||||||| ||||||| ||||||    
T  33931493 tggattaacttatttgagcttacctaatagcataagcacttgtga 33931537  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 569
Target Start/End: Original strand, 35329912 - 35329980
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgataaacacttcattaaatt 569  Q
    |||||||||||||  ||||| | ||||| |||||||||| |||| || |||||||||||| ||| ||||    
T  35329912 tttattttatcttatgttatggaaatagtttatgcataaacacttatatgataaacacttaatttaatt 35329980  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 504 - 540
Target Start/End: Complemental strand, 44064429 - 44064393
Alignment:
Q  504 attttatctttcgttataggaatagcttatgcataag 540  Q
    ||||||||||||||||||| | |||||||||||||||    
T  44064429 attttatctttcgttatagaagtagcttatgcataag 44064393  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 544
Target Start/End: Complemental strand, 27571 - 27510
Alignment:
Q  483 atatgaaaacaattttattttattttatctttcgttataggaatagcttatgcataagcact 544  Q
    ||||||||||||||| | |||||||||||||  ||||||| |||| ||||| ||||||||||    
T  27571 atatgaaaacaatttgactttattttatcttctgttatagaaataacttatacataagcact 27510  T

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Target: scaffold0590 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 553
Target Start/End: Original strand, 1167 - 1219
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 553  Q
    |||||||||||||| ||||||| |||||||||| |||||||||| || |||||    
T  1167 tttattttatcttttgttatagaaatagcttatacataagcacttatatgata 1219  T

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Target: scaffold0275 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 553
Target Start/End: Complemental strand, 2808 - 2756
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcactcatgtgata 553  Q
    |||||||||||||| ||||||| |||||||||| |||||||||| || |||||    
T  2808 tttattttatcttttgttatagaaatagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 501 - 543
Target Start/End: Original strand, 160065 - 160107
Alignment:
Q  501 tttattttatctttcgttataggaatagcttatgcataagcac 543  Q
    |||||||||||||| | ||||||||||| ||||||||||||||    
T  160065 tttattttatcttttgctataggaatagtttatgcataagcac 160107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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