View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12195_high_1 (Length: 572)

Name: NF12195_high_1
Description: NF12195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12195_high_1
NF12195_high_1
[»] chr4 (10 HSPs)
chr4 (15-572)||(4346582-4347138)
chr4 (15-250)||(4362771-4363006)
chr4 (269-438)||(4363264-4363432)
chr4 (15-237)||(4122501-4122720)
chr4 (15-237)||(4319153-4319378)
chr4 (434-492)||(4363463-4363521)
chr4 (33-101)||(4132608-4132676)
chr4 (100-237)||(4337197-4337337)
chr4 (518-572)||(4363510-4363564)
chr4 (150-239)||(4132482-4132571)
[»] chr6 (9 HSPs)
chr6 (54-101)||(5126619-5126666)
chr6 (18-101)||(5242502-5242585)
chr6 (57-111)||(5427161-5427215)
chr6 (72-168)||(5065369-5065468)
chr6 (18-111)||(5177961-5178054)
chr6 (18-111)||(5279786-5279879)
chr6 (18-97)||(5100812-5100891)
chr6 (18-97)||(5135913-5135992)
chr6 (54-94)||(5346287-5346327)
[»] chr7 (1 HSPs)
chr7 (15-100)||(36212912-36212997)


Alignment Details
Target: chr4 (Bit Score: 530; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 15 - 572
Target Start/End: Original strand, 4346582 - 4347138
Alignment:
Q  15 gtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattgacgaaaaaataga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4346582 gtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaaccaattgacgaaaaaataga 4346681  T
Q  115 ccattgtaatgcaccagatatgaatgttattgttggtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattct 214  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4346682 ccattgtgatgcaccagatatgaatgttattgttggtggtgatgaaaatgaatgctcttccaagaggatttctcctcaagtagagtccacagatgattct 4346781  T
Q  215 aatcaaagacaaaaaagaagaaagcaatagtggagaaggctttccaaatattgtagagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgc 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4346782 aatcaaagacaaaaaagaagaaagcaatagtggagaaggctttccaaat-ttgtagagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgc 4346880  T
Q  315 ttctagaagaatttctctgtgactatgtgagtctaagacatggtttaaattatcccaatcaagtcgctagttggctcttcaatgtattcttataagtgtg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4346881 ttctagaagaatttctctgtgactatgtgagtctaagacatggtttaaattatcccaatcaagtcgctagttggctcttcaatgtattcttataagtgtg 4346980  T
Q  415 tgcctatagagtttacttttcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaagaactacattatcctgtcatatacatgc 514  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4346981 tgcctatagagtttacttttcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaaaaactacattatcctgtcatatacatgc 4347080  T
Q  515 cataggaaagaactattttgtttagcatgcatcttctttattgttgtgtcaggatgct 572  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4347081 cataggaaagaactattttgtttagcatgcatcttttttattgttgtgtcaggatgct 4347138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 15 - 250
Target Start/End: Original strand, 4362771 - 4363006
Alignment:
Q  15 gtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattgacgaaaaaataga 114  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||    
T  4362771 gtgacaaagtggagatagttattgtaatggtgaacaatgtcattgtgacgaagacagcagtttatctcatatatgatgaaccaattgacggaaaaatgga 4362870  T
Q  115 ccattgtaatgcaccagatatgaatgttattgttggtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattct 214  Q
    ||| ||| || | | ||||| ||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||    
T  4362871 ccactgtgattcccaagatacgaatgttattgttggtggtgatgaaaatgaatgctcttccaagattgtttctcctcaagtagagtccacagatgattct 4362970  T
Q  215 aatcaaagacaaaaaagaagaaagcaatagtggaga 250  Q
    ||||||||||||||||||||||| || | |||||||    
T  4362971 aatcaaagacaaaaaagaagaaaacactggtggaga 4363006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 269 - 438
Target Start/End: Original strand, 4363264 - 4363432
Alignment:
Q  269 agagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgcttctagaagaatttctctgtgactatgtgagtctaagacatggtttaaattatc 368  Q
    |||||||| |||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||| ||||||||||||||||||| |||||||| ||    
T  4363264 agagaaggttttccaaatgcaaacaatcgcagcaatctcagtacacttcaagaagaattcctctgtgattatgtgagtctaagacatgttttaaattctc 4363363  T
Q  369 ccaatcaagtcgctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctt 438  Q
    ||||||||||| |||||| | |||| ||||||||||||| ||||||||| ||||||||||| ||||||||    
T  4363364 ccaatcaagtcactagtttgatctttaatgtattcttat-agtgtgtgcgtatagagtttagttttcctt 4363432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 4122720 - 4122501
Alignment:
Q  15 gtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattgacgaaaaaataga 114  Q
    |||||||||||||||| ||||||||| | |  |||| | ||||||||| |||| || |||||||||||||||||||||||||||| |  |||||||||||    
T  4122720 gtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatgaaccaatcggtgaaaaaataga 4122621  T
Q  115 ccattgtaatgcaccagatatgaatgttattgttggtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattct 214  Q
     || ||  |||||||| ||| |||||   |||||||||||| ||||||||||||  || |||||||| | ||||  |||||||||  || ||||||| ||    
T  4122620 gcaatgccatgcaccaaataagaatg---ttgttggtggtgctgaaaatgaatgcgctgccaagagggtctctctgcaagtagagcacatagatgatact 4122524  T
Q  215 aatcaaagacaaaaaagaagaaa 237  Q
    || ||||||||||||||||||||    
T  4122523 aaacaaagacaaaaaagaagaaa 4122501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 15 - 237
Target Start/End: Complemental strand, 4319378 - 4319153
Alignment:
Q  15 gtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattgacgaaaaaataga 114  Q
    ||||||| |||||||| ||||| ||| | | ||||| | ||||||||| |||| ||||||||||||||||||||||||||||| | | ||||| | | ||    
T  4319378 gtgacaaggtggagattgttgtcgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccagtcgtcgaaatattgga 4319279  T
Q  115 ccattgtaatgcaccagatatgaatgttattgttggt---ggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgat 211  Q
     || ||| || ||||||||| ||||||| |||||| |   |||||||||||||||||| || ||| |||||| ||||  ||||||||| | |||||||||    
T  4319278 gcaatgtcatacaccagataagaatgttcttgttgatatcggtgatgaaaatgaatgtgctgccatgaggatctctcgccaagtagagcctacagatgat 4319179  T
Q  212 tctaatcaaagacaaaaaagaagaaa 237  Q
    | | | |||| ||| |||||||||||    
T  4319178 tttgaacaaaaacagaaaagaagaaa 4319153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 434 - 492
Target Start/End: Original strand, 4363463 - 4363521
Alignment:
Q  434 tcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaagaacta 492  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  4363463 tcctttgatgtaggagacaacaatattgcattaagtaaataaatgtcaggaaagaacta 4363521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 4132676 - 4132608
Alignment:
Q  33 ttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattg 101  Q
    |||||||| | | ||||| | ||||||||| |||| |||||||||||||||||||||||||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattg 4132608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 4337197 - 4337337
Alignment:
Q  100 tgacgaaaaaatagaccattgtaatgcaccagatatgaatgttattgttg---gtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagta 196  Q
    |||||||||| | || || ||| |||||||||||  ||||||| | ||||   |||||||| ||||||||||| || |||||||||| |||| |||||||    
T  4337197 tgacgaaaaatttgagcaatgtcatgcaccagatgagaatgttctcgttgagagtggtgataaaaatgaatgtgctgccaagaggatctctcttcaagta 4337296  T
Q  197 gagtccacagatgattctaatcaaagacaaaaaagaagaaa 237  Q
    ||| |  |||||||||  || |||| ||| |||||||||||    
T  4337297 gagcctgcagatgatttaaaacaaaaacagaaaagaagaaa 4337337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 518 - 572
Target Start/End: Original strand, 4363510 - 4363564
Alignment:
Q  518 aggaaagaactattttgtttagcatgcatcttctttattgttgtgtcaggatgct 572  Q
    |||||||||||||||||||||||||||||||| || |||| |||| |||||||||    
T  4363510 aggaaagaactattttgtttagcatgcatctttttcattggtgtggcaggatgct 4363564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 4132571 - 4132482
Alignment:
Q  150 gtggtgatgaaaatgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaagc 239  Q
    |||||||||||||||||||| || |||||||| |  ||| |||||||||| || ||| | ||| ||| |||| ||| | |||||||||||    
T  4132571 gtggtgatgaaaatgaatgtgctgccaagaggttcactcttcaagtagagcccgcaggtcattttaaacaaaaacagagaagaagaaagc 4132482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 5126666 - 5126619
Alignment:
Q  54 tcattgtgacgaagccagcagtttatctcatatatgatgaaccaattg 101  Q
    ||||||||| |||| |||| ||||||||||||||||||||||||||||    
T  5126666 tcattgtgaagaagacagctgtttatctcatatatgatgaaccaattg 5126619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 5242585 - 5242502
Alignment:
Q  18 acaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattg 101  Q
    ||||||||||| | ||| ||||| | | ||||| | ||||||||| |||| ||| |||||||||| ||||||||||||||||||    
T  5242585 acaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatgaaccaattg 5242502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 5427161 - 5427215
Alignment:
Q  57 ttgtgacgaagccagcagtttatctcatatatgatgaaccaattgacgaaaaaat 111  Q
    ||||||||||| ||| |||||||||| |||||||||||||||||| | |||||||    
T  5427161 ttgtgacgaagacagtagtttatctcgtatatgatgaaccaattggcaaaaaaat 5427215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 168
Target Start/End: Complemental strand, 5065468 - 5065369
Alignment:
Q  72 cagtttatctcatatatgatgaaccaattgacgaaaaaatagaccattgtaatgcaccagatatgaatgttattgttggt---ggtgatgaaaatgaatg 168  Q
    ||||||||||||||||||||||||||||||  |||||    ||  | ||| |||||| ||||| ||||||||||||| ||   |||||||||||||||||    
T  5065468 cagtttatctcatatatgatgaaccaattgctgaaaagggggaggagtgtcatgcacaagataagaatgttattgttagtagcggtgatgaaaatgaatg 5065369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 5177961 - 5178054
Alignment:
Q  18 acaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattgacgaaaaaat 111  Q
    ||||||||||| | ||||||||| | | ||||  | ||||||||| |||  || ||||||||||| ||||||||||||||||||  ||||||||    
T  5177961 acaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaattggagaaaaaat 5178054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 5279786 - 5279879
Alignment:
Q  18 acaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaattgacgaaaaaat 111  Q
    ||||||||||| | ||||||||| | | ||||  | ||||||||| |||  || ||||||||||| ||||||||||||||||||  ||||||||    
T  5279786 acaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatgaaccaattggagaaaaaat 5279879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 5100891 - 5100812
Alignment:
Q  18 acaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaacca 97  Q
    ||||||||||| | ||||||||| | | ||||| | |||||||||  ||| |||||||||||||| |||| |||||||||    
T  5100891 acaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5100812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 5135992 - 5135913
Alignment:
Q  18 acaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaacca 97  Q
    ||||||||||| | ||||||||| | | ||||| | |||||||||  ||| |||||||||||||| |||| |||||||||    
T  5135992 acaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatctcgtatacgatgaacca 5135913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 54 - 94
Target Start/End: Original strand, 5346287 - 5346327
Alignment:
Q  54 tcattgtgacgaagccagcagtttatctcatatatgatgaa 94  Q
    ||||||||| |||| ||||| ||||||||||||||||||||    
T  5346287 tcattgtgaagaagacagcaatttatctcatatatgatgaa 5346327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 15 - 100
Target Start/End: Complemental strand, 36212997 - 36212912
Alignment:
Q  15 gtgacaaagtggagatagttgttgttatggtgaacaatgtcattgtgacgaagccagcagtttatctcatatatgatgaaccaatt 100  Q
    |||| ||| ||||| | ||||||||| | | ||||||| ||||||||| |||| ||||  |||||||||| |||||||||||||||    
T  36212997 gtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttatgatgaaccaatt 36212912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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