View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12195_high_4 (Length: 349)
Name: NF12195_high_4
Description: NF12195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12195_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 332
Target Start/End: Original strand, 1284272 - 1284590
Alignment:
| Q |
14 |
taatgttatatcattccatagtatggtagctcaattagggggtatttttatttgaaaaggtcaaaataaaatatattactaacaacagacaaactctcca |
113 |
Q |
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| T |
1284272 |
taatgttatatcattccatagtatggtagctcaattaagaggtatttttatttgaaaaggtcaaaataaaatatattactaaaaacaaacaaactctcca |
1284371 |
T |
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| Q |
114 |
acacaagatgtatttgaagagaatgtctcaaaagagtttaacttgcaatagaatttcaatgtgctattaggtaatatgtgtcagtgatgaagtttttaac |
213 |
Q |
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| T |
1284372 |
acacaagatgtattcgaagagaatgtctcaaaagagtttaacttacaatagaatctcaatgtgctattaggtaatatgtgtcagtgatgaagtttttaac |
1284471 |
T |
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| Q |
214 |
ttttgatgccacaaattcatgaggctgatagtgggttagtgaggttaacaaacaatatggggaggctgcatgggaaaattctaccatatgcccactataa |
313 |
Q |
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| T |
1284472 |
ttttgatgccacaaattcatgaggctgatagtgggttagtgaggttaacaaacaatatggggaggctgcatgggaaaattctaccatatgcccactatga |
1284571 |
T |
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| Q |
314 |
caaatccagccatcatatt |
332 |
Q |
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| T |
1284572 |
caaatccagccatcatatt |
1284590 |
T |
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