View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12195_high_5 (Length: 299)
Name: NF12195_high_5
Description: NF12195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12195_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 18269413 - 18269147
Alignment:
| Q |
19 |
aaaccatccggcacaccctcaagcgaaacaatcccatccacattcttagcaagtatcctaatacaaagctcctgcaatgacggaacagttaactttccac |
118 |
Q |
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| T |
18269413 |
aaaccatccggcacaccctcaagcgaaacaatcgcatccacattcttagcaagtatcctaatacaaagctcttgcaatgacggaacagttaactttccac |
18269314 |
T |
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| Q |
119 |
ctaacttctccaaatccgttttcggtttccactttatcttatcaatcaaattctcctgcacagtatcagaaccaaatggaatccatttcttctctcgatc |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18269313 |
ctaacttctccaaacccgttttcggtttccactttatcttatcaatcaaattctcctgcacagtatcagaaccaaatggaatccatttcttctctcgatc |
18269214 |
T |
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| Q |
219 |
cctaatgattttcatcgcagttgaaaatggaccaggccaatcttcaacctcattcctctctgcttct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
18269213 |
cctaatgattttcatcgcagttgaaaatggaccaggccaatcttcaacctcattcctctcttcttct |
18269147 |
T |
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