View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12195_low_3 (Length: 398)

Name: NF12195_low_3
Description: NF12195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12195_low_3
NF12195_low_3
[»] chr6 (1 HSPs)
chr6 (12-384)||(25522221-25522593)
[»] chr5 (8 HSPs)
chr5 (19-383)||(42124039-42124403)
chr5 (203-378)||(41712756-41712931)
chr5 (205-384)||(34232004-34232183)
chr5 (272-384)||(41571209-41571321)
chr5 (272-384)||(42129667-42129779)
chr5 (272-384)||(34239756-34239868)
chr5 (279-381)||(41432337-41432439)
chr5 (63-134)||(41571462-41571533)
[»] chr4 (1 HSPs)
chr4 (63-383)||(11118722-11119042)
[»] chr2 (2 HSPs)
chr2 (205-310)||(32681314-32681419)
chr2 (272-384)||(12249266-12249378)
[»] chr3 (1 HSPs)
chr3 (276-383)||(8523826-8523933)


Alignment Details
Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 25522593 - 25522221
Alignment:
Q  12 atgaaatagttttgagagaggttcaaaaacttcaatgaannnnnnncatataaccaattgggcattcttccatcaagtttgttattggaaagatcaagat 111  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522593 atgaaatagttttgagagaggttcaaaaacttcaatgaatttttttcatataaccaattgggcattcttccatcaagtttgttattggaaagatcaagat 25522494  T
Q  112 aatccaaattcgggaattttccttgcaatttgggaaatttgatcaaatttacggaagacagttccaattcttcaaggtaaaaaacactatgattgacatt 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25522493 aatccaaattcgggaattttccttgcaatttgggaaatttgatcaaatttacggaagacagttccaattcgtcaaggtaaaaaacactatgattgacatt 25522394  T
Q  212 ggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaaccactcaag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522393 ggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaaccactcaag 25522294  T
Q  312 tcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagct 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522293 tcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagct 25522221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 383
Target Start/End: Original strand, 42124039 - 42124403
Alignment:
Q  19 agttttgagagaggttcaaaaacttcaatgaannnnnnncatataaccaattgggcattcttccatcaagtttgttattggaaagatcaagataatccaa 118  Q
    ||||||||||||||||||||||   |||||||       ||  ||||||||||||||||||||||| |||||||||||  |||| ||||||  |   |||    
T  42124039 agttttgagagaggttcaaaaatagcaatgaatttttttcaagtaaccaattgggcattcttccatgaagtttgttatcagaaatatcaagtgatatcaa 42124138  T
Q  119 attcgggaattttccttgcaatttgggaaatttgatcaaatttacggaagacagttccaattcttcaaggtaaaaaacactatgattgacattggattcg 218  Q
    ||    ||||| |||||| || ||  | |||||||||||||| || ||||||| ||||||| |||  |||  | ||| ||||| |||||||||||||||     
T  42124139 atctaagaattctccttgtaaattatggaatttgatcaaattgacagaagacaattccaatacttgtaggctagaaaaactataattgacattggattca 42124238  T
Q  219 aagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgttta 318  Q
    || ||||| || |||||| ||||||||||||||||||| | |   |||  |||||||||||| ||| ||||||||||||||| |||||||||||||||      
T  42124239 aaatttagagataattgactattccatgaaagggataacatttctagacatgtaagtttggagaagagttgaaaattgacaagaccactcaagtcgttcg 42124338  T
Q  319 aagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagc 383  Q
    ||||||||||||  | || ||| ||||| || ||||||||||| || ||||||||||||||||||    
T  42124339 aagatagaattaagtgagatagttttgttaggttgaaaatggactcaggaatattgccttgtagc 42124403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 203 - 378
Target Start/End: Complemental strand, 41712931 - 41712756
Alignment:
Q  203 attgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaa 302  Q
    ||||||| ||||||| |||||||||||||||||| ||||   ||||||||| | | ||   ||||||  ||||| ||| |||| ||||||||  |||| |    
T  41712931 attgacaatggattcaaagtttagtgacaattgattattaagtgaaagggacagagatactagattttgaagttcggagaagtattgaaaatcaacaaca 41712832  T
Q  303 ccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgcctt 378  Q
    ||||| |||| |||| | |||||   |||  ||||||||||| |||| |||||||| |||||||||||||||||||    
T  41712831 ccactgaagttgtttgatgataggtctagtctagttaggtttataagtttgaaaattgattctggaatattgcctt 41712756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 384
Target Start/End: Complemental strand, 34232183 - 34232004
Alignment:
Q  205 tgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaa-aatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaac 303  Q
    ||||||||||||| ||| ||||||| ||||| ||||||  ||||||||| ||| |||  ||  |||| |||||||  |||||||||||||||||||| ||    
T  34232183 tgacattggattcaaaggttagtgataattgtgtattctgtgaaagggacaaagaatacaaattttg-aagtttgccaaagtgttgaaaattgacaacac 34232085  T
Q  304 cactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgccttgtagct 384  Q
    ||||||||| |||| | ||||||  ||    || ||  |||  ||| |||||||| |||||||||||||||||||||||||    
T  34232084 cactcaagttgtttgatgatagatctaatacagctaaatttacaaggttgaaaattgattctggaatattgccttgtagct 34232004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 41571321 - 41571209
Alignment:
Q  272 aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata 371  Q
    |||||||||||||| || ||||||||||| ||||||||||| |||| | || ||   |||  |||||||||||  ||| |||||||| ||||| ||||||    
T  41571321 aagtttggaaaagtatttaaaattgacaataccactcaagttgtttgatgacaggcatagtgtagttaggtttacaaggttgaaaatagattcaggaata 41571222  T
Q  372 ttgccttgtagct 384  Q
    | |||||||||||    
T  41571221 tcgccttgtagct 41571209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 272 - 384
Target Start/End: Original strand, 42129667 - 42129779
Alignment:
Q  272 aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata 371  Q
    |||||||||||||||||||||||  | || | ||||||||| |||| | ||||||  |||   ||||| ||||| ||| |||||||| |||| |||||||    
T  42129667 aagtttggaaaagtgttgaaaatcaataacatcactcaagttgtttgatgatagatctagcaaagttaagtttgcaaggttgaaaatagattttggaata 42129766  T
Q  372 ttgccttgtagct 384  Q
    |||||||||||||    
T  42129767 ttgccttgtagct 42129779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 384
Target Start/End: Complemental strand, 34239868 - 34239756
Alignment:
Q  272 aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata 371  Q
    |||||| | ||||| |||||||||||||| ||||||||||| |||| | ||||||  |||  || ||||||||| ||| |||||||| || | |||||||    
T  34239868 aagttttgtaaagtcttgaaaattgacaacaccactcaagttgtttgatgatagacatagtgtaattaggtttgcaaggttgaaaattgaatttggaata 34239769  T
Q  372 ttgccttgtagct 384  Q
    |  ||||||||||    
T  34239768 tcaccttgtagct 34239756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 381
Target Start/End: Original strand, 41432337 - 41432439
Alignment:
Q  279 gaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgcctt 378  Q
    |||||| ||| |||||||||||||||||||||||  ||| ||||||||   |  ||||| ||||||  ||| |||||||  |||||||||||||| ||||    
T  41432337 gaaaagagtttaaaattgacaaaaccactcaagttatttgaagatagacacaagttagtaaggtttacaaggttgaaaagtgattctggaatatttcctt 41432436  T
Q  379 gta 381  Q
    |||    
T  41432437 gta 41432439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 63 - 134
Target Start/End: Complemental strand, 41571533 - 41571462
Alignment:
Q  63 aaccaattgggcattcttccatcaagtttgttattggaaagatcaagataatccaaattcgggaattttcct 134  Q
    ||||||||||||| |||||||| ||||||||| ||||| | |||||||||   |||| | ||||||||||||    
T  41571533 aaccaattgggcactcttccataaagtttgttgttggacaaatcaagatatctcaaactagggaattttcct 41571462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 383
Target Start/End: Original strand, 11118722 - 11119042
Alignment:
Q  63 aaccaattgggcattcttccatcaagtttgttattggaaagatcaagataatccaaattcgggaattttccttgcaatttgggaaatttgatcaaattta 162  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| ||||    |||| | || |||| |||||| || ||| |||||| |||||| || |    
T  11118722 aaccaattgggcattcttccattaagtttgtttttggaaagatccagatgtgacaaacttggaaattctccttgtaagttgtgaaattcgatcaagttga 11118821  T
Q  163 cggaagacagttccaattcttcaaggtaaaaaacactatgattgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcg 262  Q
    | ||||| | ||  | |  ||  |||| |  || ||||| | |||||||||||||||| ||||||||||| ||| |||||| |||||||||||||| |      
T  11118822 cagaagataatttgagtatttgtaggttagtaaaactataagtgacattggattcgaattttagtgacaactgactattccttgaaagggataaaatttc 11118921  T
Q  263 aagatttgtaagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggat 362  Q
     || |  | || |||||| ||| ||| ||||||||||| ||||||||||| |||| | ||||||  ||| | |  ||| ||||| ||  |||||||| ||    
T  11118922 caggtcagcaaatttggagaagagtttaaaattgacaacaccactcaagttgtttgatgatagatctagttcatctagctttgttaggctgaaaatgcat 11119021  T
Q  363 tctggaatattgccttgtagc 383  Q
    |||||||||||||||||||||    
T  11119022 tctggaatattgccttgtagc 11119042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 32681419 - 32681314
Alignment:
Q  205 tgacattggattcgaagtttagtgacaattgagtattccatgaaagggataaaaatcgaagatttgtaagtttggaaaagtgttgaaaattgacaaaacc 304  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||| |||| |||  | |||| |||||||||||| ||| ||||||||||||||| |||    
T  32681419 tgacattggattcaaagtttagtgacaattgactattccatgaaagagatagaaagtggagatgtgtaagtttggagaagagttgaaaattgacaagacc 32681320  T
Q  305 actcaa 310  Q
    ||||||    
T  32681319 actcaa 32681314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 272 - 384
Target Start/End: Original strand, 12249266 - 12249378
Alignment:
Q  272 aagtttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaata 371  Q
    ||||||||||||| |||||||||  |||| ||||||||||| |||| | |||| |  |||  |||||||| ||||||| ||||||||||||| |||||||    
T  12249266 aagtttggaaaagagttgaaaatcaacaacaccactcaagttgtttgatgataaatctagtctagttagggttgtaaggttgaaaatggattttggaata 12249365  T
Q  372 ttgccttgtagct 384  Q
    |||||||||||||    
T  12249366 ttgccttgtagct 12249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 276 - 383
Target Start/End: Original strand, 8523826 - 8523933
Alignment:
Q  276 ttggaaaagtgttgaaaattgacaaaaccactcaagtcgtttaaagatagaattagattagttaggtttgtaagattgaaaatggattctggaatattgc 375  Q
    ||||||| || ||| |||||||||| ||||||||||| |||| | ||||||  |||  || ||||||||| ||| |||||||||||||||||||||||||    
T  8523826 ttggaaatgttttggaaattgacaacaccactcaagttgtttgatgatagatctagtctacttaggtttgcaaggttgaaaatggattctggaatattgc 8523925  T
Q  376 cttgtagc 383  Q
    ||||||||    
T  8523926 cttgtagc 8523933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University