View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12196_high_10 (Length: 372)

Name: NF12196_high_10
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12196_high_10
NF12196_high_10
[»] chr4 (3 HSPs)
chr4 (4-352)||(23338905-23339253)
chr4 (9-38)||(1561998-1562027)
chr4 (4-41)||(55870258-55870295)
[»] chr8 (1 HSPs)
chr8 (7-38)||(31891931-31891962)
[»] chr5 (1 HSPs)
chr5 (7-38)||(34417845-34417876)
[»] scaffold0388 (1 HSPs)
scaffold0388 (9-41)||(8745-8777)
[»] chr7 (1 HSPs)
chr7 (4-32)||(25847660-25847688)
[»] chr6 (3 HSPs)
chr6 (4-40)||(1231216-1231252)
chr6 (4-40)||(6536729-6536765)
chr6 (4-40)||(33027709-33027745)
[»] chr1 (1 HSPs)
chr1 (72-136)||(52103509-52103573)


Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 4 - 352
Target Start/End: Complemental strand, 23339253 - 23338905
Alignment:
Q  4 gtcagtagataaactcaaataaattaatccaaacatgtcataaaagagtttaacaaatgaaaatgcttactatatgccatgccagagccttcccctgcaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339253 gtcagtagataaactcaaataaattaatccaaacatgtcataaaagagtttaacaaatgaaaatgcttactatatgccatgccagagccttcccctgcaa 23339154  T
Q  104 agacaaaaatgagcattgaaatgaactcagcaagtgcagccttaagtgcatcagctttgccaaactcagaaggatttccaattgcaattctagaaatcgg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339153 agacaaaaatgagcattgaaatgaactcagcaagtgcagccttaagtgcatcagctttgccaaactcagaaggatttccaattgcaattctagaaatcgg 23339054  T
Q  204 cattgttttatatttttccttttctcaaagaaatttttcaagcttagaatagtacttttgataataacttgcacttcaagcttagttaatatttatgttg 303  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23339053 cattgttttatattttttcttttctcaaagaaatttttcaagcttagattagtacttttgataataacttgcacttcaagcttagttaatatttatgttg 23338954  T
Q  304 gttagttttcttgctccaactttaactaaaatgctgctatatatagtaa 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23338953 gttagttttcttgctccaactttaactaaaatgctgctatatatagtaa 23338905  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 38
Target Start/End: Original strand, 1561998 - 1562027
Alignment:
Q  9 tagataaactcaaataaattaatccaaaca 38  Q
    ||||||||||||||||||||||||||||||    
T  1561998 tagataaactcaaataaattaatccaaaca 1562027  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 55870295 - 55870258
Alignment:
Q  4 gtcagtagataaactcaaataaattaatccaaacatgt 41  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  55870295 gtcattagataaactcaaataagttaatccaaacatgt 55870258  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 31891931 - 31891962
Alignment:
Q  7 agtagataaactcaaataaattaatccaaaca 38  Q
    ||||||||||||||||||||||||||||||||    
T  31891931 agtagataaactcaaataaattaatccaaaca 31891962  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 34417876 - 34417845
Alignment:
Q  7 agtagataaactcaaataaattaatccaaaca 38  Q
    ||||||||||||||||||||||||||||||||    
T  34417876 agtagataaactcaaataaattaatccaaaca 34417845  T

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Target: scaffold0388 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 8777 - 8745
Alignment:
Q  9 tagataaactcaaataaattaatccaaacatgt 41  Q
    ||||||||||||||||||| |||||||||||||    
T  8777 tagataaactcaaataaatcaatccaaacatgt 8745  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 25847660 - 25847688
Alignment:
Q  4 gtcagtagataaactcaaataaattaatc 32  Q
    |||||||||||||||||||||||||||||    
T  25847660 gtcagtagataaactcaaataaattaatc 25847688  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 1231252 - 1231216
Alignment:
Q  4 gtcagtagataaactcaaataaattaatccaaacatg 40  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  1231252 gtcaatagataaactcaaataaatcaatccaaacatg 1231216  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 6536729 - 6536765
Alignment:
Q  4 gtcagtagataaactcaaataaattaatccaaacatg 40  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  6536729 gtcagtaggtaaactcaaataatttaatccaaacatg 6536765  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 33027709 - 33027745
Alignment:
Q  4 gtcagtagataaactcaaataaattaatccaaacatg 40  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  33027709 gtcagtagataagctcaaataaatcaatccaaacatg 33027745  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 52103509 - 52103573
Alignment:
Q  72 actatatgccatgccagagccttcccctgcaaagacaaaaatgagcattgaaatgaactcagcaa 136  Q
    |||||| ||||||||||||||||  || ||||| |||||||||||||| || | |||||| ||||    
T  52103509 actataggccatgccagagccttggccagcaaaaacaaaaatgagcatagagaagaactctgcaa 52103573  T

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