View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12196_high_11 (Length: 355)
Name: NF12196_high_11
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 148 - 351
Target Start/End: Complemental strand, 5793456 - 5793255
Alignment:
| Q |
148 |
cagttctgatgatccatgttatgttgcgactgattttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatc |
247 |
Q |
| |
|
|||||||| |||||| ||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5793456 |
cagttctgctgatccctgttatgttgctactgtttttgtcagttttgctattagttggcttagatgctgctttgtgttcgttgttgtgtaaattaatatc |
5793357 |
T |
|
| Q |
248 |
agtttagctgaggccatcttatggctgtgttggtttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagctctctgct |
347 |
Q |
| |
|
| ||||||||||||| ||||||||| ||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5793356 |
attttagctgaggccgtcttatggc--tgtcggtttcagtgagtttcgcctatatatggcggctgttgttttgtatttcatttgtggctagctctctgcg |
5793259 |
T |
|
| Q |
348 |
tctc |
351 |
Q |
| |
|
|||| |
|
|
| T |
5793258 |
tctc |
5793255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 5670222 - 5670046
Alignment:
| Q |
164 |
tgttatgttgcgactgattttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatcagtttagctgaggcca |
263 |
Q |
| |
|
|||||||| ||| ||| ||||||||||||| ||||||||||||| ||||||||||||||||| || ||||||| |||| |||||||||||| ||||| |
|
|
| T |
5670222 |
tgttatgtcgcggctgtttttgtcagttttgctattagttggctgagatgctgctttgtgttggtggttgtgtttatttttatcagtttagccgaggctg |
5670123 |
T |
|
| Q |
264 |
tcttatggctgtgttggtttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagct |
340 |
Q |
| |
|
|||||||| |||||||||||| || |||| || || ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
5670122 |
tcttatggttgtgttggtttctgtttgttccgtctttatacggcgcgcgttgttttgtatttcatctgtggctagct |
5670046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 164 - 340
Target Start/End: Complemental strand, 5693893 - 5693717
Alignment:
| Q |
164 |
tgttatgttgcgactgattttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatcagtttagctgaggcca |
263 |
Q |
| |
|
||||||| ||| ||| ||||||||||||| ||||||||||||| |||||||||| |||||| || ||||||| |||| |||||||||||| ||||| |
|
|
| T |
5693893 |
tgttatgacgcggctgtttttgtcagttttgctattagttggctgagatgctgctctgtgttggtggttgtgtttatttttatcagtttagccgaggctg |
5693794 |
T |
|
| Q |
264 |
tcttatggctgtgttggtttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagct |
340 |
Q |
| |
|
|||||||| |||||||||||| || |||| || || ||||||||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
5693793 |
tcttatggttgtgttggtttctgtttgttccgtctttatacggcgcgcgttgttttgtatttcatctgtggctagct |
5693717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 342
Target Start/End: Complemental strand, 5679692 - 5679531
Alignment:
| Q |
181 |
ttttgtcagtttttctattagttggcttagatgctgctttgtgttcgttgttgtgtaaatttatatcagtttagctgaggccatcttatggctgtgttgg |
280 |
Q |
| |
|
|||||||| |||| ||||||||||||| ||||||||||||||||| || ||||||| |||| || ||||||||| ||||| |||||||| |||||||| |
|
|
| T |
5679692 |
ttttgtcatttttgctattagttggctgagatgctgctttgtgttggtggttgtgtttatttttaacagtttagccgaggctgtcttatggttgtgttgg |
5679593 |
T |
|
| Q |
281 |
tttcagtgtgtttcgcctatatacggcggttgttgttttgtatttcatttgtggttagctct |
342 |
Q |
| |
|
|||| || |||| || |||||||||| | ||||||||||||||||| ||| | ||||||| |
|
|
| T |
5679592 |
tttctgtttgttccgtctatatacggtgtccgttgttttgtatttcatctgtagctagctct |
5679531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 5793524 - 5793480
Alignment:
| Q |
79 |
ttctgctgagattttgtggcttccctagtgtttttggtatgttcc |
123 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
5793524 |
ttctgttgagattttgtggcttccctagggtttttggtacgttcc |
5793480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University