View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12196_high_14 (Length: 251)

Name: NF12196_high_14
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12196_high_14
NF12196_high_14
[»] chr4 (3 HSPs)
chr4 (119-251)||(53171450-53171582)
chr4 (13-91)||(53171325-53171403)
chr4 (16-91)||(56461317-56461392)
[»] chr7 (1 HSPs)
chr7 (12-91)||(19277995-19278074)
[»] chr1 (2 HSPs)
chr1 (12-91)||(28040330-28040409)
chr1 (59-91)||(19036297-19036329)
[»] chr3 (3 HSPs)
chr3 (17-91)||(29862631-29862705)
chr3 (12-91)||(49018777-49018856)
chr3 (12-74)||(6174346-6174408)
[»] chr2 (2 HSPs)
chr2 (13-68)||(9684640-9684695)
chr2 (54-91)||(8588932-8588969)
[»] chr5 (1 HSPs)
chr5 (16-91)||(434123-434198)
[»] chr6 (1 HSPs)
chr6 (47-91)||(32120787-32120831)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 53171450 - 53171582
Alignment:
Q  119 gtcaatttaatccctaaaatcttaataacaagaaccaaattgataggttttatatattaaagagtggttattaattaagtccacactaattaagaaaatc 218  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  53171450 gtcaatttgatccctaaaatcttaataacaagaaccaaattgataggttttatatattaaagagtggttattaattaagtccgcactaattaagaaaatc 53171549  T
Q  219 aaaagtaaaatttttgtattagaaaaaacgact 251  Q
    | ||||||||  |||||||||||||||||||||    
T  53171550 agaagtaaaaaatttgtattagaaaaaacgact 53171582  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 53171325 - 53171403
Alignment:
Q  13 tgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    |||||||||||| |||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| |||||    
T  53171325 tgtgccctagaagccacaaaagcttacaaaaaagcctctaatgttgagtacaaacccaaccctccaaacctaataggta 53171403  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 56461392 - 56461317
Alignment:
Q  16 gccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    ||||||||| |||||||| ||||||||||| |||||  || ||||||||||||||||| ||||||||||| |||||    
T  56461392 gccctagaagccacaaaaacgtacaaagaagcctctgctgctgagtacaaacccaaccttccaaacctaataggta 56461317  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 19277995 - 19278074
Alignment:
Q  12 ctgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    |||||||||||||||||| ||||||||| |  || ||||||||| ||||||||||||||||||||||||||||| |||||    
T  19277995 ctgtgccctagaaaccaccaaagcgtacgagaaagcctctaatgctgagtacaaacccaaccctccaaacctaataggta 19278074  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 28040409 - 28040330
Alignment:
Q  12 ctgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    ||||||| ||||| ||||||||| |||| | ||| ||| ||||||| ||||||||| ||||||||||||||||| |||||    
T  28040409 ctgtgccttagaagccacaaaagtgtacgaggaagcctataatgtttagtacaaactcaaccctccaaacctaataggta 28040330  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 91
Target Start/End: Original strand, 19036297 - 19036329
Alignment:
Q  59 agtacaaacccaaccctccaaacctaacaggta 91  Q
    ||||||||||||||||||||||||||| |||||    
T  19036297 agtacaaacccaaccctccaaacctaataggta 19036329  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 29862631 - 29862705
Alignment:
Q  17 ccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    ||||| ||||||||||| ||||| ||||| |||||| || ||||||||||||||| | ||||||||||| |||||    
T  29862631 ccctaaaaaccacaaaaacgtacgaagaagcctctactgctgagtacaaacccaatcttccaaacctaataggta 29862705  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 49018777 - 49018856
Alignment:
Q  12 ctgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    |||||||||| || ||||| |||||||  | ||| ||| || || |||| ||||||||||| ||||||||||||||||||    
T  49018777 ctgtgccctataagccacagaagcgtaagaggaagcctatactgctgagcacaaacccaacgctccaaacctaacaggta 49018856  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 6174408 - 6174346
Alignment:
Q  12 ctgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccc 74  Q
    ||||||| ||||| |||||||||||||| | ||| |||||| || |||||| |||||||||||    
T  6174408 ctgtgccttagaagccacaaaagcgtacgaggaagcctctactggtgagtataaacccaaccc 6174346  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 9684695 - 9684640
Alignment:
Q  13 tgtgccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacc 68  Q
    |||||||||||| |||||||||||||  ||||| |||||||||||||||| |||||    
T  9684695 tgtgccctagaagccacaaaagcgtatgaagaagcctctaatgttgagtataaacc 9684640  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 8588932 - 8588969
Alignment:
Q  54 tgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8588932 tgttgagtacaaacccaaccctccaaacctaataggta 8588969  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 434123 - 434198
Alignment:
Q  16 gccctagaaaccacaaaagcgtacaaagaaacctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    ||||||||| |||||||||||| ||| ||| |||||| || |||||| |||||||||||  || |||||| |||||    
T  434123 gccctagaagccacaaaagcgtgcaaggaagcctctactgctgagtataaacccaacccctcagacctaataggta 434198  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 32120787 - 32120831
Alignment:
Q  47 cctctaatgttgagtacaaacccaaccctccaaacctaacaggta 91  Q
    |||||| || |||||||||||||||||||| |||||||| |||||    
T  32120787 cctctactgctgagtacaaacccaaccctctaaacctaataggta 32120831  T

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