View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12196_high_15 (Length: 245)
Name: NF12196_high_15
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 23339246 - 23339485
Alignment:
| Q |
1 |
ctactgacgtaaacatttttaaaaccggtataagctcatttcctttagttatatgaaaacattcttttatatgataaatatttatgctataaacgcttaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23339246 |
ctactgacgtaaacatttttaaaaccggtataagctcatttcctttagttatatgaaaacattcttttatatgataaatatttatgctataaacgcttaa |
23339345 |
T |
|
| Q |
101 |
ttgaactgtttttccaaacatgtttgagtgtaactttatgtttttgacagataagcttacaaacaatggtgcagcaacaccagcagggttggtagctgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23339346 |
ttgaactgtttttccaaacatgtttgagtgtaactttatgtttttgacagataagcttacaaacaatggtgcagcaacaccagcagggttggtagctgca |
23339445 |
T |
|
| Q |
201 |
tcactatcacatgcatttgcactttttgttgctgtctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23339446 |
tcactatcacatgcatttgcactttttgttgctgtctctg |
23339485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 25497505 - 25497457
Alignment:
| Q |
70 |
tatgataaatatttatgctataaacgcttaattgaactgtttttccaaa |
118 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
25497505 |
tatgataaacgtttatgctataagcgcttaattgatctgtttatccaaa |
25497457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 39505886 - 39505840
Alignment:
| Q |
72 |
tgataaatatttatgctataaacgcttaattgaactgtttttccaaa |
118 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| |||||| |||||| |
|
|
| T |
39505886 |
tgataaacatttatgctataaatgcttaattgagctgtttatccaaa |
39505840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 753340 - 753393
Alignment:
| Q |
67 |
ttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaaca |
120 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||| | ||||| |||||||| |
|
|
| T |
753340 |
ttatatgataaatgtttatgctataaacacttaattaagttgtttatccaaaca |
753393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Original strand, 13869234 - 13869284
Alignment:
| Q |
70 |
tatgataaatatttatgctataaacgcttaattgaactgtttttccaaaca |
120 |
Q |
| |
|
|||||||| | |||||||||||| ||||||||||| |||||| |||||||| |
|
|
| T |
13869234 |
tatgataagtgtttatgctataagcgcttaattgagctgtttatccaaaca |
13869284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 13244617 - 13244670
Alignment:
| Q |
67 |
ttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaaca |
120 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
13244617 |
ttatatgataagcgtttatgctataaacgctcaatttaactgtttatccaaaca |
13244670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 29115352 - 29115404
Alignment:
| Q |
70 |
tatgataaatatttatgctataaacgcttaattgaactgtttttccaaacatg |
122 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||| || ||||| |||||||||| |
|
|
| T |
29115352 |
tatgataaatgtttatgctataagcgcgtaattaaagtgtttatccaaacatg |
29115404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 27320250 - 27320198
Alignment:
| Q |
67 |
ttatatgataaatatttatgctataaacgcttaattgaactgtttttccaaac |
119 |
Q |
| |
|
|||| |||||| | |||||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
27320250 |
ttatgtgataagtgtttatgctataagcgcttaattaaattgtttttccaaac |
27320198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University