View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12196_high_17 (Length: 240)
Name: NF12196_high_17
Description: NF12196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12196_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 53171569 - 53171793
Alignment:
| Q |
1 |
tagaaaaaacgacttttgaacttctaaaatgttgaatgcaacattttgttatgcaaaaattttatatttattttaacaatgttctgagagcattaattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53171569 |
tagaaaaaacgacttttgaacttctaaaatgttgaatgcaacattttgttatgcaaaaattttatatttattttaacaatgttctgagagcattaattaa |
53171668 |
T |
|
| Q |
101 |
cannnnnnnn-ctttatagtatagtataactttgagactgataaattgaagatgatttgatagtttataggctaaatcgacactttattcatttttatcc |
199 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53171669 |
catttttttttctttatagtatagtataactttgagactaataaattgaagatgatttgatagtttataggctaaatcgacactttattcatttttatcc |
53171768 |
T |
|
| Q |
200 |
tcaaaattaagacatgtatatacat |
224 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
53171769 |
tcaaaattaagacatgtatatacat |
53171793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University